XLOC_017866 (zgc:194224)


Basic Information

Item Value
gene id XLOC_017866
gene name zgc:194224
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 4149523 ~ 4157138 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035272
GGACAGTTCGCGTGCTTGAAGCACACACGTGAAACACACGTAAACAACCCTTCCGTTAAAACCGGTTTTGTTTGTCAAAATGAGCGTAACAAACGATAAACAGGACGGAAAAGTGGATGACGATCGTCTTTTCCTCGATCAAGTTTTAAACGAGTTGTATGATTTTGGTGATGGAGAAAACAAAAGATCAAAGAAATGTCTGAAAAGAAAGAAGAACTTATCTAAAGATGATAACGCTGGCACTGTGAACGAAGCTGAGGGAAACGCAGATACCGACTCAAACTCAGCTGGAACCAAACAATCCAAGGTGGAGGTTGTTACATTTGTTGATCCTTTAAAGAAGAACAAGTTATCACAGTCTGTTGAACCAAAGCAGAAGGTTCCTGATGTCAAAGAAAAAATGATGATGACAATGAAGAAAAAAGGCCTAGATGAGAAGCTAACCATAGAAAAGGCTCGGTTTGAAGTTCACAGGTTTGGACTGTCGGGTTATCAGAAGCAGCAGCAGAGGGTGTTTGAGGAGGAAAGAGCCATCATGCTGGGAGCCAGACCCCCTAAAAAGCAGTATGTTAACTACAAAGTGTACCAACAACAGCTAAAAGAACGGAAGATGAAAGAGAAAGAGGAAGCGAAACCTGAGTTacaaaagaaaagaaggaaggaaggaaaaccaagGACTGAGAAAAGTAAACCCTCGTCTAGCAGAGAGCTTGGCGGACAAGTCGGACGCTTCAAAAATGGAATGCTGGTCTTGAGCTCCAAAGAAATTCAGAAATTTAACTCCAAAGGGAAAAAGTAGCCATGGATGAATGAAAAACCACAGAAGG

Function

symbol description
zgc:194224 Orthologous to human C1orf131 (chromosome 1 open reading frame 131).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-79 Orthologous to human C1orf131 (chromosome 1 open reading frame 131).

Ensembl:

ensembl_id ENSDARG00000078606

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035272 True 827 mRNA 0.42 7 4149523 4157138

Neighbor

gene id symbol gene type direction distance location
XLOC_017865 NA coding downstream 3391 4135534 ~ 4146132 (-)
XLOC_017864 CABZ01042336.1 coding downstream 23269 4126140 ~ 4126254 (-)
XLOC_017863 sprtn coding downstream 99661 4033193 ~ 4049862 (-)
XLOC_017862 fam89a coding downstream 118048 4026408 ~ 4031475 (-)
XLOC_017861 ttc13 coding downstream 151992 3954579 ~ 3997531 (-)
XLOC_017867 NA coding upstream 224791 4381929 ~ 4386307 (-)
XLOC_017868 CABZ01032982.1 coding upstream 248799 4405937 ~ 4407228 (-)
XLOC_017869 NA coding upstream 338003 4495141 ~ 4496142 (-)
XLOC_017870 papola coding upstream 555638 4712776 ~ 4738133 (-)
XLOC_017871 ak7a coding upstream 585262 4742400 ~ 4766649 (-)
XLOC_017928 CU539064.1 misc upstream 5896267 10053405 ~ 10053701 (-)
XLOC_017860 NA non-coding downstream 195892 3942667 ~ 3953631 (-)
XLOC_017859 NA non-coding downstream 233753 3913424 ~ 3915770 (-)
XLOC_017857 NA non-coding downstream 422597 3721325 ~ 3726926 (-)
XLOC_017875 BX649499.1 non-coding upstream 748940 4906078 ~ 4907477 (-)
XLOC_017876 NA non-coding upstream 911674 5068812 ~ 5070190 (-)
XLOC_017882 CABZ01045949.1 non-coding upstream 1164077 5321215 ~ 5321329 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G221187 NA unknown CI01000051 null 6825799 ~ 6833068 (+)
eurasian perch (Perca fluviatilis) G185233 LOC103372532,LOC104962272,LOC100693291 unknown NC_053129.1 CM020926.1 17911270 ~ 17913036 (-)
mexican tetra (Astyanax mexicanus) G185156 NA non-coding NC_035917.1 CM008320.1 17517367 ~ 17519169 (+)