LOC110502506 (LOC106573550)


Basic Information

Item Value
gene id LOC110502506
gene name LOC106573550
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19568684 ~ 19575028 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580605.2
GGTTCCTAGAGTAAACGGTGTCGGTTACGAAACGTTTTACAACGGAATCCGATTAATAAATACACCCCAGAATCCATGACGATGACTAACCACGAAAAGGCAGTATGACATCACCAACCCTGCCTTTACTTGCCAGGAATCATTTGCTAGTTGTTGTTACTCACACAAAGGGAAGCTGCTTCGAATACTGTATAATTTCATCAAAGGAACAAAAACTACTATAGATCGCTCAGTTATTTGCAATCGCGGAGAAACACAAAACAATTGTGTCCGAGTTTCCGTCTGAAACGATGTCTTTCATCCCAGGACAACCAGTTACTGCTGTTGTGCAACGAATTGAAATCTGCAAACTTCGCCAGGGTGAACATTTGATCCTGGGTTTCAGCATTGGAGGGGGAATAGACCAAGACCCTGGTCAGAACCCCTTCTCTGAAGACAAGTCCGACAAGGGCATCTATGTGACACGGGTGACACCAGGGGGACCAGCAGAAGTTGCGGGCTTGATGATGGGAGACAAAGTAATGCAGGTAAATGGATGGGATATGACCATGGTGACACACGACCAGGCACGCAAACGGCTGACGAAGAAGAATGAAGACATTGTGCGGCTACTGGTGACCAGGAAATCGCTGGAGCAGGCTGTCAGACATTCTATGATGTAATGACTCAAACGCTAGTCTTTTAGTGCAGACAGAGTTTGCTATCAGACGTGAGACAATGCCAGTGACCGAGAGCATAGTATTTCAAATCTTTTATCACATACTGTAAGTTTGGGGTGAATTCCACATCAATTCTGTCAATTCAGGAGATGTAATGAAATTGAAAAGTGCAATTTATTTCATGAAGGATTCCTGAGTTGAATTGCAAAGGAATTGATTATGGCTGTACTCACATATTCCCAAACAGGGTACACTCCATTTATACCATGTCTCTACAATTCATCAGTGTGATTCTAGTTATTGGGATCATTAACGCCTTTAACTAGCTGACTTGTGTATTACTTTTTCAGTTATTAGTACATTTCATGATCTCAGTCATAATTTGATTTAATCTACATTTTATATCTATGTTTTCGAGTCCATGTCTGTACAAGCCaaaagaaaacattttt
>TU21568
AGTATGACATCACCAACCCTGCCTTTACTTGCCAGGAATCATTTGCTAGTTGTTGTTACTCACACAAAGGGAAGCTGCTTCGAATACTGTATAATTTCATCAAAGGAACAAAAACTACTATAGATCGCTCAGTTATTTGCAATCGCGGAGAAACACAAAACAATTGTGTCCGAGTTTCCGTCTGAAACGATGTCTTTCATCCCAGGACAACCAGTTACTGCTGTTGTGCAACGAATTGAAATCTGCAAACTTCGCCAGGGTGAACATTTGATCCTGGGTTTCAGCATTGGAGGGGGAATAGACCAAGACCCTGGTCAGAACCCCTTCTCTGAAGACAAGTCCGACAAGGGCATCTATGTGACACGGGTGACACCAGGGGGACCAGCAGAAGTTGCGGGCTTGATGATGGGAGACAAAGTAATGCAGGTAAATGGATGGGATATGACCATGGTGACACACGACCAGGCACGCAAACGGCTGACGAAGAAGAATGAAGACATTGTGCGGCTACTGGTGACCAGGAAATCGCTGGAGCAGGCTGTCAGACATTCTATGATGTAATGACTCAAACGCTAGTCTTTTAGTGCAGACAGAGTTTGCTATCAGACGTGAGACAATGCCAGTGACCGAGAGCATAGTATTTCAAATCTTTTATCACATACTGTAAGTTTGGGGTGAATTCCACATCAATTCTGTCAATTCAGGAGATGTAATGAAATTGAAAAGTGCAATTTATTTCATGAAGGATTCCTGAGTTGAATTGCAAAGGAATTGATTATGGCTGTACTCACATATTCCCAAACAGGGTACACTCCATTTATACCATGTCTCTACAATTCATCAGTGTGATTCTAGTTATTGGGATCATTAACGCCTTTAACTAGCTGACTTGTGTATTACTTTTTCAGTTATTAGTACATTTCATGATCTCAGTCATAATTTGATTTAATCTACATTTTATATCTATGTTTTCGAGTCCATGTCTGTACAAGCCaaaagaaaacattttttttttaaactatagaCTAATAAATGTAACTACGTCATGTGGTGTAACTTCCACATATTTTGCATGAGCAGTTTTGTAGTGGGGATAGAGGTTGTTATGCAAACATATGTGTACAAAGCACATATGGTAATTTCCAGCATTAATCTGCAACACTCATTTGTATGTCTTCCATAGAGTTGTCCTCTTTATATTGTGTTTTTGAGTTTAATATATGGCTTTAATAACAATTTAACACTTAAGTGATTAACAACGCCATGTCATCTGGAAAATGTATGAATATTCATCATCAGGCTTGGATTATATATTTTTGAATCTTTTTATTTTGGTATCATCCATGTTGTGCATCTACCAAAGTAACAAGCACAGCTGAACTGCATACTTTATATTTCATTTTACAATATTGTACTTTATGTCTACCAAATACTGTAATATTCATTTGAGGATTTTAGTTTTGTATGTCATGCAGGAAAACAGTTACTTCTCAACCATCGGGATATAGTTAATCTGGTGTTGCATCCTTGACTTGAAATCAAGACTAGGGTATAGTCAACCTTTTTATAAGTGCCTTCTTTCTCACGTTCATATAGAGAAAGTGGCATTTTGGATTGTTCATTAGGTCACTTGCTGGTTGATCTTACAGCTAGTTGCACACTGGAATAGTTTGGACCAAGGTTGATGGATCTAATGAATTGAGAGAGATGTTTGATACACAACAGCCTTAAATGAAACTAGTGATTGTACCACTAAATTGTGATGGTGCGAAATAGTGTTTTTTGTATTCAAGCCCTTTTCCATTCCTATTGTTCAATGACATGTAAGCTTTATCACTGCCTCAGCTGTACAATAAACAGCAAGGCCTCAGTGATTTAATCCAATCTTCTCAGTTCCTATTAAAATGGATCAAAGATAAAGGAATGTTGTAATGCATATTCCAATGGTAcctaatatactgtacatacatccTAGTATGTTCTACTAATTTAGTATTTGATATGGCTTTGTTTTTGTtagaattttatttatttatttggagattataattatatataaactaggtggtttgagccctgaatgctgattggctgaccgctgtggtatatcagaccatattccacaggtatgacaaaacatgtattttcatACTCTATTTACGTTGgtagccagtttataatagcaataaggcaccttgggggtttgggGTATATcggcaatataccacggctaagggctgtctccaggcactccgcgttgcgcataagaacagcccttagtcgtagtttattggccatataccacaccacctcgggccttattgcttaaatatcaaTGGCAGAGTGACACATCTAACTCCACACCCAACTTTTAAAAGAATAAACACTTCAAAAGACTGACCAACCTTTTGGTAAATGTAGCCTTGTATGAACATTTTCTATGAGGTCGATTTCTATCTACATGTCAACTGTTAAACTATCTATTTCATTTGTTGTCCATAAGTACTCAGGGTATATGGGGAAAACCTTTGAATTTACCATTTTGGCATATGATTGTATACTTTATACTTCGAATGTTCTTTAACATAAATCAAAATCAAC

Function

NR:

description
PREDICTED: tax1-binding protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580605.2 False 1111 mRNA 0.42 4 19568684 19573437
TU21568 True 2601 TUCP 0.35 4 19568785 19575028

Neighbor

gene id symbol gene type direction distance location
LOC118944665 NA coding upstream 13261 19553236 ~ 19561396 (+)
LOC110502309 LOC106573548 coding upstream 19032 19538738 ~ 19549652 (+)
tpm4a LOC106573547 coding upstream 32128 19510957 ~ 19536556 (+)
si:ch1073-396h14.1 LOC106573543 coding upstream 126368 19384984 ~ 19442316 (+)
LOC110501592 LOC106573542 coding upstream 199727 19359411 ~ 19368957 (+)
LOC110502566 LOC106573551 coding downstream 9742 19583179 ~ 19597535 (+)
LOC110502681 LOC106573553 coding downstream 46748 19620185 ~ 19628041 (+)
LOC110503198 LOC106573556 coding downstream 63276 19636713 ~ 19641888 (+)
LOC110503136 LOC106573555 coding downstream 68455 19641892 ~ 19661285 (+)
LOC110503571 LOC106573562 coding downstream 265583 19839020 ~ 19840715 (+)
G18480 NA non-coding upstream 5281 19562906 ~ 19563403 (+)
G18473 NA non-coding upstream 16627 19551844 ~ 19552057 (+)
G18454 NA non-coding upstream 62837 19505523 ~ 19505847 (+)
G18364 NA non-coding upstream 229431 19337019 ~ 19339253 (+)
G18501 NA non-coding downstream 56952 19630389 ~ 19633111 (+)
G18515 NA non-coding downstream 87894 19661331 ~ 19661968 (+)
G18513 NA non-coding downstream 88669 19662106 ~ 19663909 (+)
G18516 NA non-coding downstream 90572 19664009 ~ 19664221 (+)
G18523 NA non-coding downstream 98997 19672434 ~ 19672638 (+)
G18481 NA other upstream 3463 19564849 ~ 19565221 (+)
G17420 NA other upstream 612476 18882723 ~ 18956208 (+)
ccdc124 cc124 other upstream 1577508 17975918 ~ 17991176 (+)
LOC110495874 LOC106573877 other upstream 1903676 17654164 ~ 17673094 (+)
LOC110492876 LOC106613263 other upstream 2600894 16962997 ~ 16967790 (+)
LOC110503939 LOC106573564 other downstream 290354 19863734 ~ 19865619 (+)
G19083 NA other downstream 342149 19915586 ~ 19915832 (+)
G19359 NA other downstream 669208 20242645 ~ 20242875 (+)
G19380 LOC100194703 other downstream 703153 20276590 ~ 20276895 (+)
G19400 NA other downstream 735988 20309425 ~ 20309898 (+)

Expression


Co-expression Network