c1h15orf40 (cssa16h15orf40)


Basic Information

Item Value
gene id c1h15orf40
gene name cssa16h15orf40
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39481601 ~ 39486010 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165166.1
GACAGCACTGTGTGCAGTAGCTTTGTTAACATTTTCTGACCGCTGTGCCTTGACGTTACtggagataaaaaaaataaataaaaaagcacTGTAGTTTGAATAGTCACTGAGATTCCTTGATGTTCACCCAAACCCGTTCTCTTCGTTTAACCCGGACAACATTATTTCAGGTGTTACATTTGAGCAACTTTATCCAAAAGCATCTGTCTCTCTACTTCTGTCGGAGACTGTCCTCATCATCACACCAGCTTGAGGGACCTTTGTCAGCAAGAAGAAATTACTCTGGAAACCATAACATGCCCAAAAAGGACAAAACGaATAAAACTGTAGGCCTACAGAAGCCGTCGGAGAAACCTTCACCTTCTGGGCCAGTAGCTCGAAACAAGAACGGAGTGGTGACAATTTCAGTGCACGCGAAGCCTGGATCTAAACAGAACGCAATTACAGATGTGTCTATAGAGGCAGTAGGTGTCGCTATTGCCGCACCGCCAACAGATGGGGAGGCCAATGCGGAGCTTGTGCGGTATCTCTCCAAGGTGCTGGAGTTGAAGAAAAGTGAAGTCGTTTTGGACAAGGGCTCCAGATCCAGAGAGaagattattaaagtgactgggtCACTAACCCCGGAGCAGGTGTTGGACAGGTTAAAGCAAGAGGCTTCTGGATGACATCATGGAGGACATTGTGTTCCTGGTCCTATGCACCTTTACAGTATTGGTTGATTTTAAGATATCTATGGAAAACAGTTCAGATAAAATAAGATTGTAGCTATGTGTTTGCATCAGCTGATACATACACCAATAAATACACAATATGTGACATGCCCTATATGGAAGCATTCTATAATTATTTGAAATGTGTAGGGGTCTGAAATGATTCCCAAAATGTTGAAAGAACCCTTGTTTACGGAGGccatcctctctcttttctcagaaATAATTAGCTTATCATCTTTTGCACTATGatagttaaaataaaaaataaaaatatgaatcACAATG
>TU47939
AGACAGCACTGTGTGCAGTAGCTTTGTTAACATTTTCTGACCGCTGTGCCTTGACGTTACtggagataaaaaaaataaataaaaaagcacTGTAGTTTGAATAGTCACTGAGATTCCTTGATGTTCACCCAAACCCGTTCTCTTCGTTTAACCCGGACAACATTATTTCAGGTGTTACATTTGAGCAACTTTATCCAAAAGCATCTGTCTCTCTACTTCTGTCGGAGACTGTCCTCATCATCACACCAGCTTGAGGGACCTTTGTCAGCAAGAAGAAATTACTCTGGAAACCATAACATGCCCAAAAAGGACAAAACGCATGtattttcagattccacaatgattatTTAGTTGTGGACACGACACCACCGCATTCCGTCTTGCTCTTGGCCCTCCTCATCTTTaATAAAACTGTAGGCCTACAGAAGCCGTCGGAGAAACCTTCACCTTCTGGGCCAGTAGCTCGAAACAAGAACGGAGTGGTGACAATTTCAGTGCACGCGAAGCCTGGATCTAAACAGAACGCAATTACAGATGTGTCTATAGAGGCAGTAGGTGTCGCTATTGCCGCACCGCCAACAGATGGGGAGGCCAATGCGGAGCTTGTGCGGTATCTCTCCAAGGTGCTGGAGTTGAAGAAAAGTGAAGTCGTTTTGGACAAGGGCTCCAGATCCAGAGAGaagattattaaagtgactgggtCACTAACCCCGGAGCAGGTGTTGGACAGGTTAAAGCAAGAGGCTTCTGGATGACATCATGGAGGACATTGTGTTCCTGGTCCTATGCACCTTTACAGTATTGGTTGATTTTAAGATATCTATGGAAAACAGTTCAGATAAAATAAGATTGTAGCTATGTGTTTGCATCAGCTGATACATACACCAATAAATACACAATATGTGACATGCCCTATATGGAAGCATTCTATAATTATTTGAAATGTGTAGGGGTCTGAAATGATTCCCAAAATGTTGAAAGAACCCTTGTTTACGGAGGccatcctctctcttttctcagaaATAATTAGCTTATCATCTTTTGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165166.1 False 1001 mRNA 0.42 4 39481601 39486009
TU47939 True 1045 lncRNA 0.44 5 39481644 39486010

Neighbor

gene id symbol gene type direction distance location
kip1 kip1 coding downstream 121941 39357133 ~ 39359660 (-)
man2a2 man2a2 coding downstream 145276 39315052 ~ 39336325 (-)
LOC118966691 LOC106573346 coding downstream 366504 39100825 ~ 39115097 (-)
LOC110522389 LOC106573347 coding downstream 397283 39081003 ~ 39084318 (-)
LOC110520456 NA coding downstream 462510 39015075 ~ 39019091 (-)
si:ch211-59o9.10 LOC106573327 coding upstream 44159 39530168 ~ 39543311 (-)
LOC110522511 LOC106573329 coding upstream 57485 39543494 ~ 39547739 (-)
LOC110522519 LOC106573326 coding upstream 67422 39553431 ~ 39563229 (-)
LOC110522541 LOC106573325 coding upstream 94828 39580837 ~ 39583183 (-)
LOC110522551 LOC106573324 coding upstream 110536 39596545 ~ 39618668 (-)
G42663 NA non-coding downstream 2342 39479010 ~ 39479259 (-)
G42661 NA non-coding downstream 6551 39474786 ~ 39475050 (-)
G42605 NA non-coding downstream 90660 39389371 ~ 39390941 (-)
G42429 NA non-coding downstream 367969 39113322 ~ 39113632 (-)
G42420 NA non-coding downstream 378056 39103062 ~ 39103545 (-)
G42668 NA non-coding upstream 2023 39488032 ~ 39488448 (-)
G42670 NA non-coding upstream 3057 39489066 ~ 39489405 (-)
G42673 NA non-coding upstream 6302 39492311 ~ 39492521 (-)
G42674 NA non-coding upstream 6622 39492631 ~ 39492865 (-)
G42695 NA non-coding upstream 29059 39515068 ~ 39515926 (-)
G41868 NA other downstream 459576 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 1289865 38187488 ~ 38191736 (-)
G40732 NA other downstream 1355876 38125280 ~ 38125725 (-)
G40079 NA other downstream 1764568 37716540 ~ 37717033 (-)
G38855 NA other downstream 2970772 36508538 ~ 36510829 (-)
tspan9a LOC106573177 other upstream 3552719 42852829 ~ 43129052 (-)
G49774 NA other upstream 6234796 45720805 ~ 45721124 (-)
G49962 NA other upstream 6462949 45948958 ~ 45949951 (-)
G51214 NA other upstream 7578765 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 7802930 47288939 ~ 47289681 (-)

Expression


Co-expression Network