LOC110522541 (LOC106573325)


Basic Information

Item Value
gene id LOC110522541
gene name LOC106573325
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39580837 ~ 39583183 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600996.2
CAATTGAATTTGTCTATTTCTCGACGCAGCCTTCTTCTCTACTAACGTTGTGAAAAACCTTCCTCCACACTTATCAAATAGGCTAGTTTCTGAGTCGAATTTATCCAGACTTTTTATTTGATTACACATCGGTCTGTAATCACAAACCAGTAAATCATTCATAGTAAGAAACGCCGTATATTGTTTCATTTAAATGTGGATTATATAAATAGGGCTCTTCACGAAGGAGGACGAGGGATCGAGGGACGCCGCCATATTTGCTCTTGCTAGCTAGTGCACTACAAGATACGGGCTTTGTTTCGAGTACCCTTCAATTTAGTACCCTTGTATTTGTTCATGATGGATGCGATGGATAAAAGACCTTTTGGTGCAGAATATAACTATAAAATGTCGGAAAATGACATATCCAGATTAATAAAATTGCGTGCAACGAATGACGCCATCTTCACTGGGAAGAGAAACTCTGCCATGCCTGCCTGGAGAGCAATGTTAGTAGAGTTGGGTCTCGAAGGGAAGCTAACAACCGGGCAATTGAAAAAGAAGTGGGAAAACCTTAAAAAGAAATATAAGGATTTTAAGTACCCTCCTCTTGGCATGGAGAAAGTCAATCCAATGTCCTGGCGTTGGTTTCACCTCATGGACGATGCCATCGAGGGCCGCCTAGCTGGGTCTGCCCGTATCCTAAACCCTTCACTGTTTGATTTTGGGGAAGTTGGGGACGTTTCATTTGCGTCCTCTCCCACTACCTCTCCCATAGCCAACAAGAGACTATGTATGAGGCCGGAGGGAGGTGAGGGAACAAACATTTTTGAGTTCTGGgccaaggcacagctgggggagagTGTTGGTGCTGCGAGCACGGTAGCAGATGGACAGGTGGCATACACAGACGCAGCTACAGAGGAGATCCGGAGGGCAGCGGTGGAGTGCGAGAGGGCCCTGCGAGAGGAGGGCAGGGGTGCAGCTCAGAATGAGAGGGCCGCGCCTGACAAGATGCCAGTGGGTGGGTACGGGAGGACCATGGCTGAGGATGTGGAGACCATAGCTGAAGACGGAAGAGCCATGTTGGTGAGAAACCCTGGCAGGAACATTGAGAGGGAGACTGCTGAACTAGAGAGGCAGATAGCAGATTTGGAGAAGGAGCGAGAAGTGCTAGAGAGGGAGCAGGCAGACtttgacagggagaggttgatactggacagagagagggatgtggtGAGCAGAGAGCGGGTGGCTGTTGAGCGAGGCAGAGCTTCACTAGACAAGGACAGAGCAGCGATGGACAGGGAGCGAGCAGCAATGGAACGGGAGCGAGCCATACTGGACAGGGATAGAGCGtcaatcgagagagagagggcagagctgCAGAAAGAAAAGGAAGCCCTAATGAAAAGCAAGGTTTCCAGGAACAACGGCTCCACTGATGTGGAACTGGACTCATCCACTATAGAAAAAAGAGAGAAACTGCTTTCCATATTTGAGAGACTTGTTGATAAGCTGTGAAAGATGAACAATGAGTAAAGGTTGAATAGGTGAAGGATGTACTGTAGGTGAGAGTGCGCACAAGTCATAAACAGGTTTCTATGTCACCAGTCCCCTA

Function

NR:

description
uncharacterized protein LOC110522541

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600996.2 True 1600 mRNA 0.48 4 39580837 39583183

Neighbor

gene id symbol gene type direction distance location
LOC110522519 LOC106573326 coding downstream 17608 39553431 ~ 39563229 (-)
LOC110522511 LOC106573329 coding downstream 33098 39543494 ~ 39547739 (-)
si:ch211-59o9.10 LOC106573327 coding downstream 37526 39530168 ~ 39543311 (-)
c1h15orf40 cssa16h15orf40 coding downstream 94828 39481601 ~ 39486010 (-)
kip1 kip1 coding downstream 221177 39357133 ~ 39359660 (-)
LOC110522551 LOC106573324 coding upstream 13362 39596545 ~ 39618668 (-)
LOC110522570 NA coding upstream 134859 39718042 ~ 39735940 (-)
trnar-ucg NA coding upstream 158230 39741413 ~ 39741485 (-)
kras rask coding upstream 914198 40497381 ~ 40513885 (-)
bhlhe41 LOC106573310 coding upstream 982136 40565319 ~ 40568730 (-)
G42695 NA non-coding downstream 64911 39515068 ~ 39515926 (-)
G42674 NA non-coding downstream 87972 39492631 ~ 39492865 (-)
G42673 NA non-coding downstream 88316 39492311 ~ 39492521 (-)
G42670 NA non-coding downstream 91432 39489066 ~ 39489405 (-)
G42668 NA non-coding downstream 92389 39488032 ~ 39488448 (-)
G42693 NA non-coding upstream 9011 39592194 ~ 39643822 (-)
G42835 NA non-coding upstream 205787 39788970 ~ 39794020 (-)
G42863 LOC106573315 non-coding upstream 248834 39832017 ~ 39832245 (-)
G42866 NA non-coding upstream 252546 39835729 ~ 39835958 (-)
G41868 NA other downstream 558812 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 1389101 38187488 ~ 38191736 (-)
G40732 NA other downstream 1455112 38125280 ~ 38125725 (-)
G40079 NA other downstream 1863804 37716540 ~ 37717033 (-)
G38855 NA other downstream 3070008 36508538 ~ 36510829 (-)
tspan9a LOC106573177 other upstream 3455545 42852829 ~ 43129052 (-)
G49774 NA other upstream 6137622 45720805 ~ 45721124 (-)
G49962 NA other upstream 6365775 45948958 ~ 45949951 (-)
G51214 NA other upstream 7481591 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 7705756 47288939 ~ 47289681 (-)

Expression


Co-expression Network