G42835


Basic Information

Item Value
gene id G42835
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39788970 ~ 39794020 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU48122
TCTTTTTTATTATTGTTAAGAGAAAGGACACTTAAACTGCAGAACTGAAGTAAGAGTGAGCAGTTCAACAGGTCTAACAGTTTCAAGCAGGGTTGTGCCTCTGGGATTGATGATTTAATTTAGAAAGCGCAAGACTCAATTTACAAAGGTGCTTCATTTAAACAGCTGACCACAGAAGCGCTACTTACAAAACTCAAATCAACCAAGTAATGATGCAAATATTTCTACAGCTGtcccaaaaaatatttaaaataagcTTATTAAATAGGTTCCATTCATTAATATATATTACTTCTTTACTCTTGCTGGAGCTTATTTTTTTCCAAACGTTAATAAAGCTGCAGTCTGATACAAAATTACTGCTTTGAATGGAGCCTCGGAGTTAGTGACTATCTCAATACTATCAACTTAGCTTCCTTTCCTTATGTCCTGCCCTCCATGATCACTGACCTGTCGTCAGGAGAAGATGGGGGGGAAAGCCACATGGTGGAAAACCCTTCCAGTCCCTTCAGCCATTCGTGGTCATGAAGGAAAGGGATCAAGGAAATGAATCCATAGAGGAGTTGGGACAAAACCATCCACTGTAATGCCAAGAACAGTCATACACTTTTCGCAATGTAAATGTACAGTATGATTTAGTATTCAGTAGGGTCCCCATTAGCTGCTACTAAGGCAGCAGcaggtactcttcctggggtccaaatgGGAATAAAGATGAGAACCTTGAATAGAATTTTGTGTTGTACAATGCTTTGCAAACAGCCATTATCCTAACAGGTGTTGCAATACCTTTATAACATCCGGTTAAAAGCATCCAATAGGGCAATATGCTATCAGTCTAAATACAAATGGCtgatacagctacagtacagcgtAAGCTTTTTGCCaacatgtagaaaatactaatATGTTGAAACATCCAGTCATTAAATATTTCCATTTTACTACATACTATCCATCAGAAgtattttgaaaataaaaagtAGCAATTTCTGATATGCAAATGCCCAATTGCGTAATATTGTAATATTAAAATACATCATATTTTCCTTGACCTTGTGACGAAAAGAGTAAAAGCACCGGAGATCTTTTCTAACACCATAATGCCACCTGTGAAACAAACTAAGAGCAATGTACACACTAATATATAGCAAACCAAAAGTGTCTCAGATTGTGAAAAAGAGTATTGGAAACAGGTGGCATTAAACTGAAAATACAGTATGCATCCAAACAAAATCATTAAAGAATACGTTTTAGTAGAAATTCCACTCACTTCTCTTACAATGACTTGCAAAAGTATTTACccacccttggcatttttcctattttgttgccttaaaaCCTGgatttaaaatagattttggggggggtttatataatttgatttacacaacatgcctaccactttgaagatgcaacatatgtttttattgtgaaacaaataagACAAACAGAACtggagcgtgcataactattcacctcacaccccccccccccccccccccccaaagtcaatactttgtagagccactttttgcagcaattactgctgcaagtctcttggggtatgtctctataaacttggcacatctagccactgggatttttgcccattcttcaaggaaaactgctccagctccttcaagttggatgggttctgctggtgtacagcaatctttaagtcacaccacagattcacaattggattgaggtctgggatttgactaggccattccaagacatttaaatgtttcccattaaaccactcgagtgttgctttagcagtatgcttggggtcattgtcctgctggaaggtgaacctcccagtctcaaatctctggaagactgaaacaggtttccctcaacaatttccctgtatttagcaccatccatcactCCTTCAATTCTGAgcagtttctcagtccctgccaatgaaaaacatccccacagcatgatgctgccaccaccatgcttcactgtcgggatggtgttctcggggtgatgaaaggtgttgggtttgtgccagacatagcgttttccttgatggccaaaaagctacattttagtgtcatctgaccagagtaccttcttccatatgtttggggagtctcccacatgccttttggcgaacaccaaacgtgtttgttatttttttctttaagcaatggcttttttatggcaactcttccataaagcccagctctgtggtgtgtatggcttaaagtggtcctatggacagataatcCAATCTCCCTGTGGAGcgttgcagctccttcagggttatctttggtctcttagttgcctctctgattaatgccctccttgcttggtccatgagttttggtgggccgCCCTCTTGTCAGGTTTGTTGagttgccatattctttccattttttaataatggatttaaaacttgtttgggatagggggcagcattttcacttttggatgaatagcgtgcccagagtgaactgcctcctactcagtcccagataataatatatgcatattattattcgtattggatagaaaacactctgaagtttctaaaactgtttgaatgatgaggcaaaaacctgagaaatccaaacaggaagtgggaaatctgagttttgtagtttttgaactcacccctatcgaatacacagtgggatgtgggttattttgcacttcctaaggcttccactagatgtcaaccgtctttggaacgttgtttcaggcttctcatGTAAAGGGGTgccggatgggagctgtttgactaagggatCTGACTACAGCCTTGTTCTCAGTCACACGCTTTCACTTGAgaggtagctctcgttccattgcttttatacagacaatggaattctccggttggaagaTTATTGAACTttaatgataaaaacatcctaaagattgattctatacttagtttgacaagtttcttcgacctgtaatataactttttgaacgtttCGTCTGAATGGACCGgatcgcgcttttggatttgtttacaaaacgccctaacaaaagaagctattgggcataaatggacataaatggacattatcgaacaaaacacgcatttattgtggaactgcaattcctgggagtgcattctgatgaagatcatcaaaggtaagttaatatttagaatgctatttatgaataatgttgactacccaacatggaggatatttctctggctgatttgggctctgagcgccgttctcagattatgctttttccgtaaagtttttttgaaatctgacacagcggttgcattaaggagaagtgtatctaaagtttcatgtataatagttgtattttcatcaacatttattatgagtatttctatgaattcatgtggctctgcaaaatcactgcatgttttggaactactgaacgtaacacgccaatgtaaagtaagatttttggatataaatatgaactttaccgaacaaaacatacatgtattgtgtcatctgatgaagatcatcaaaggttagtgattaattttatctctatttgtgctttttgtgactcctctctttggctggaaaaacagctgggtttttctgtgagttggtggtgacctaacataatcgtttctGGATTTTttgctgtaaaacatttttgaaatcagacactgtggctggattaacgagaattgtatctttaaaatggtgcctaatacttatATGTTTGAGacatttgatttatgagatttctgttgatttgtatttggcgccctgcaatttcattggctgttggcgagatGGTGCTCCgtggaatgttcaaagtttcagatatttttttataacccaaccctgatctgtacttctccacaactttgtccctgacctgtttggacagctccttggtcttgatggtgccgcttgcttggtggtgccccttgcttagtggtgttgcatactctggggcctttcaaaaAAGGTGTATATATACAGAGATCATGTGACCCTTAGATTGCACAcaagtggactttatttaactaattatgtgacttctgaaggtaattggttgcaccagatcgtaTTTATGGGATTCATAGCAAAGTggatgaatacatatgcacaaacCACTTTTCTCCTTTTTGTGAATTTtctttaacttatttttttcatttcacttcaccaatttggaccaTTTTCTGCATGTCAATTATGACAtcgaaataaaaatatttttaaattaaaggttgtaatgcaacaaaataggaaaaacgccaagggggatgaatactttgcaAGGCACATACATTACAACTCAGAGGCACAGAGCGTTTGTTCTGGGGTTTGTGGGATGAAAAGTAAAATCCTCTTCTCTGGTTTAAAAATGAATAACAATAAGCTGTTAAGGAAGCCTTTGTCATATCATATGACCTCTGGGTATGCCGCAGCAGAGATACCAATGTCGTGTGGAGGTGAAAAGAGGGGAAACATGGGACAGGGAGCAAGGATACTTCAGGTGCCTAGGGGGTAGGGCAAAAGGTTGTTTCTGGCCAGTACCAGAAATGTGTGGGACAGTGTGGAGGTGATTTGGGATTGTGAAGCTgtgtacagtagagagagattcTACAGGGGTAGTAAATATGGGGCTTTTCTGTGTGTAAGCATTTCAGGGTTCTATAGGGGAAAGATATACATACATGAGTGATAATTAAGACCAAGAGTTTTGCCTAACCACATAACCTGATCAGGAAAAAACAACGGCCTTAGTTATAGGTTACAACTAGATTCACAAATGTTTTCCAGGTGCGGTCAACACTCGGGATGTGTGTACGGGGTCTAGGTaagcctgtgtctgtctgcctcatCAGGATGTCCAGGACTGCATGTTGCGCAGCATGGCCTCAAAGCGCTCCATGTCGGGGGCATAGGCGTGGGCCAGCCGGTCCGTCAGGCGGCTGTAAAGGCTGAACGACTTGAGCTCTAGCCAGATGAAGCCGAAGTGGTCTTCGTCGAACAGGACAAACAGGCCCGGTGTGCGCTCCGGACTTGTGAAGCCGTGGCCTGCA

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48122 True 5023 lncRNA 0.40 2 39788970 39794020

Neighbor

gene id symbol gene type direction distance location
trnar-ucg NA coding downstream 47485 39741413 ~ 39741485 (-)
LOC110522570 NA coding downstream 53030 39718042 ~ 39735940 (-)
LOC110522551 LOC106573324 coding downstream 170302 39596545 ~ 39618668 (-)
LOC110522541 LOC106573325 coding downstream 205787 39580837 ~ 39583183 (-)
LOC110522519 LOC106573326 coding downstream 225741 39553431 ~ 39563229 (-)
kras rask coding upstream 703361 40497381 ~ 40513885 (-)
bhlhe41 LOC106573310 coding upstream 771299 40565319 ~ 40568730 (-)
LOC110522681 LOC106573309 coding upstream 796072 40590092 ~ 40750790 (-)
eea1 LOC106573307 coding upstream 996050 40790070 ~ 40833456 (-)
nudt4a LOC106573306 coding upstream 1055496 40849516 ~ 40879189 (-)
G42693 NA non-coding downstream 145148 39592194 ~ 39643822 (-)
G42695 NA non-coding downstream 273044 39515068 ~ 39515926 (-)
G42674 NA non-coding downstream 296105 39492631 ~ 39492865 (-)
G42673 NA non-coding downstream 296449 39492311 ~ 39492521 (-)
G42863 LOC106573315 non-coding upstream 37997 39832017 ~ 39832245 (-)
G42866 NA non-coding upstream 41709 39835729 ~ 39835958 (-)
G42876 NA non-coding upstream 59134 39853154 ~ 39858612 (-)
G42883 NA non-coding upstream 73564 39867584 ~ 39867811 (-)
G42887 NA non-coding upstream 76566 39870586 ~ 39870823 (-)
G41868 NA other downstream 766945 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 1597234 38187488 ~ 38191736 (-)
G40732 NA other downstream 1663245 38125280 ~ 38125725 (-)
G40079 NA other downstream 2071937 37716540 ~ 37717033 (-)
G38855 NA other downstream 3278141 36508538 ~ 36510829 (-)
tspan9a LOC106573177 other upstream 3244708 42852829 ~ 43129052 (-)
G49774 NA other upstream 5926785 45720805 ~ 45721124 (-)
G49962 NA other upstream 6154938 45948958 ~ 45949951 (-)
G51214 NA other upstream 7270754 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 7494919 47288939 ~ 47289681 (-)

Expression


Co-expression Network