LOC110522570


Basic Information

Item Value
gene id LOC110522570
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39718042 ~ 39735940 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473340.2
ATCTAGCTGTATGAGTATTAAATACCTGTCATAAAGCTAGATAACCGAAAGTAGAAATTACTTCCACATTCACGGTCAGGTAGGAAATAAGGCCTAGGGTATACCTACAACTAATTAGGCCTTGGAACAAGTTTCGCCAAGTTCCACCTCAAAGGGAGACAAGAGAGGGGACAAAGACTGTGCCTGATCCCCACCGGATGGGTgctgaaagaggagagaaaggagccATCTTGGGAGATGTTGCCGCGGTACCTAAAATGGCTGGGCTGGCACACGAGGTCTGGATATGGAGTCGTCAGGATTCTGCATACCCTATTGGGGATCCTGGTATGGACCAAACAACCATTAGACAGTTAAAACCATCTCtgtcactgtcatagtcagtttaTACATCTGGCATGAGgagctacagtagcctacactGTTCACAGAACCAGAGGACCACAACAAGCTAGAGGGAAGACGATGGAAGATTATGCAAGAGGATGCTTAAAATATACTTTGGCAAAAATCACAAGAGACTAGAAAATACTGGAGAAATCTGAAATTTTTTCATGGAATACATTCACACATTCACTCTTCCTTGAATTTGTTGTTCTTTCACTGAttcaatgtaataataataatgaaaaacaTAAACACACTTATGTTCTCAAGTCACAAGTGACATTCaaactctgctgtgtgtgtgtgtatgtgtatgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtggcaTTGCTCTTTATAAACCCTAAAGAAAGTGATTCCACATTGTTGTCAATTAAATGATGTACAATGATCATTTGTGTCTTGCTTCATGTTCATCAATTTTTTAAGGGATAGTAAATGTGGAGAACCAAAAGAACACTTTGGGTGGGGAGTGGGCCGAAGGACACCTGCCTCAAACTAGAATGAGAAATGTAGCACAGGGGTATGGGTGATTAAAACAATTGTAATATAGGCTACCATGCTGAGAGAAACCCACCTCTTTGGAGCTGGCCATCGTGCAAAGCAAACAACTTATCATTTAGTCCTCTTGTATCAGTACCTTGGACAGCACCATGTGTTGGGATACAGCTCCCAGCTCCCACTTTTTCATATAACAAACTAATTTATGCAGGTGGGAGTGAGAAACAATGGTGGCCTTAGTAAATATAATACAAATTGAATATTCCCATATTTAACGCAGTTATTTCTGAAGTAGGTTAAATCTGAAGTTAGACTTGTTTTGAGGGAGTTGTTTAAACTATTAGAGGCTATTCCTAATTCCAGACTTGACAGACTTGATTAGTGACTCCATTTTCTGACACCAAATCAGGTTTAGGATTATACAGTGTAGGTCTGATTTGATGGAACGAACATTGACTCCAATATCTCACCCTTGACCTCAATCAGTGTCCATCCTGATGACCAAAGTCAACAACAGATGGACAGAAGTAAGATCAAGAAGGGATTATTCAGTCGTTGTGTAGTTATAATCAAAACATGTTTGATGTGACAGGCAAAAAGTAGTAAATATAATTAAATGAATGCTTATCATTGGTACTGATGCTAACACTTACAAAGTTGTCAAGGAAATTGTTTAATTCATGCTGGAAAACAGTCCAAATAGTGCTGTTTTGGTGGAG
>XR_002473343.2
GCGCGCACGAAGTGAGTAGGCTAGAGCTCGGAGGACTAGGGAAGGAGACGGACTAGGGGGAGAAGACGGGAGACAAGAGAGGGGACAAAGACTGTGCCTGATCCCCACCGGATGGGTgctgaaagaggagagaaaggagccATCTTGGGAGATGTTGCCGCGGTACCTAAAATGGCTGGGCTGGCACACGAGGTCTGGATATGGAGTCGTCAGGATTCTGCATACCCTATTGGGGATCCTGGTATGGACCAAACAACCATTAGACAGTTAAAACCATCTCtgtcactgtcatagtcagtttaTACATCTGGCATGAGgagctacagtagcctacactGTTCACAGAACCAGAGGACCACAACAAGCTAGAGGGAAGACGATGGAAGATTATGCAAGAGGATGCTTAAAATATACTTTGGCAAAAATCACAAGAGACTAGAAAATACTGGAGAAATCTGAAATTTTTTCATGGAATACATTCACACATTCACTCTTCCTTGAATTTGTTGTTCTTTCACTGAttcaatgtaataataataatgaaaaacaTAAACACACTTATGTTCTCAAGTCACAAGTGACATTCaaactctgctgtgtgtgtgtgtatgtgtatgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtggcaTTGCTCTTTATAAACCCTAAAGAAAGTGATTCCACATTGTTGTCAATTAAATGATGTACAATGATCATTTGTGTCTTGCTTCATGTTCATCAATTTTTTAAGGGATAGTAAATGTGGAGAACCAAAAGAACACTTTGGGTGGGGAGTGGGCCGAAGGACACCTGCCTCAAACTAGAATGAGAAATGTAGCACAGGGGTATGGGTGATTAAAACAATTGTAATATAGGCTACCATGCTGAGAGAAACCCACCTCTTTGGAGCTGGCCATCGTGCAAAGCAAACAACTTATCATTTAGTCCTCTTGTATCAGTACCTTGGACAGCACCATGTGTTGGGATACAGCTCCCAGCTCCCACTTTTTCATATAACAAACTAATTTATGCAGGTGGGAGTGAGAAACAATGGTGGCCTTAGTAAATATAATACAAATTGAATATTCCCATATTTAACGCAGTTATTTCTGAAGTAGGTTAAATCTGAAGTTAGACTTGTTTTGAGGGAGTTGTTTAAACTATTAGAGGCTATTCCTAATTCCAGACTTGACAGACTTGATTAGTGACTCCATTTTCTGACACCAAATCAGGTTTAGGATTATACAGTGTAGGTCTGATTTGATGGAACGAACATTGACTCCAATATCTCACCCTTGACCTCAATCAGTGTCCATCCTGATGACCAAAGTCAACAACAGATGGACAGAAGTAAGATCAAGAAGGGATTATTCAGTCGTTGTGTAGTTATAATCAAAACATGTTTGATGTGACAGGCAAAAAGTAGTAAATATAATTAAATGAATGCTTATCATTGGTACTGATGCTAACACTTACAAAGTTGTCAAGGAAATTGTTTAATTCATGCTGGAAAACAGTCCAAATAGTGCTGTTTTGGTGGAG
>TU48059
ACATTCACGGTCAGGTAGGAAATAAGGCCTAGGGTATACCTACAACTAATTAGGCCTTGGAACAAGTTTCGCCAAGTTCCACCTCAAAGGGAGACAAGAGAGGGGACAAAGACTGTGCCTGATCCCCACCGGATGGGTgctgaaagaggagagaaaggagccATCTTGGGAGATGTTGCCGCGGTACCTAAAATGGCTGGGCTGGCACACGAGGTCTGGATATGGAGTCGTCAGGATTCTGCATACCCTATTGGGGATCCTGGTATGGACCAAACAACCATTAGACAGTTAAAACCATCTCtgtcactgtcatagtcagtttaTACATCTGGCATGAGgagctacagtagcctacactGTTCACAGAACCAGAGGACCACAACAAGCTAGAGGGAAGACGATGGAAGATTATGCAAGAGGATGCTTAAAATATACTTTGGCAAAAATCACAAGAGACTAGAAAATACTGGAGAAATCTGAAATTTTTTCATGGAATACATTCACACATTCACTCTTCCTTGAATTTGTTGTTCTTTCACTGAttcaatgtaataataataatgaaaaacaTAAACACACTTATGTTCTCAAGTCACAAGTGACATTCaaactctgctgtgtgtgtgtgtatgtgtatgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgt
>TU48060
GGAGGACTAGGGAAGGAGACGGACTAGGGGGAGAAGACGGGAGACAAGAGAGGGGACAAAGACTGTGCCTGATCCCCACCGGATGGGTgctgaaagaggagagaaaggagccATCTTGGGAGATGTTGCCGCGGTACCTAAAATGGCTGGGCTGGCACACGAGGTCTGGATATGGAGTCGTCAGGATTCTGCATACCCTATTGGGGATCCTGGTATGGACCAAACAACCATTAGACAGTTAAAACCATCTCtgtcactgtcatagtcagtttaTACATCTGGCATGAGgagctacagtagcctacactGTTCACAGAACCAGAGGACCACAACAAGCTAGAGGGAAGACGATGGAAGATTATGCAAGAGGATGCTTAAAATATACTTTGGCAAAAATCACAAGAGACTAGAAAATACTGGAGAAATCTGAAATTTTTTCATGGAATACATTCACACATTCACTCTTCCTTGAATTTGTTGTTCTTTCACTGAttcaatgtaataataataatgaaaaacaTAAACACACTTATGTTCTCAAGTCACAAGTGACATTCaaactctgctgtgtgtgtgtgtatgtgtatgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgt
>TU48061
TCGGTTTCTGTCTTTGGTTATCTAGCTGTATGAGTATTAAATACCTGTCATAAAGCTAGATAACCGAAAGTAGAAATTACTTCCACATTCACGGTCAGGTAGGAAATAAGGCCTAGGGTATACCTACAACTAATTAGGCCTTGGAACAAGTTTCGCCAAGTTCCACCTCAAAGGGAGACAAGAGAGGGGACAAAGACTGTGCCTGATCCCCACCGGATGGGTgctgaaagaggagagaaaggagccATCTTGGGAGATGTTGCCGCGGTACCTAAAATGGCTGGGCTGGCACACGAGGTCTGGATATGGAGTCGTCAGGATTCTGCATACCCTATTGGGGATCCTGGTATGGACCAAACAACCATTAGACAGTTAAAACCATCTCtgtcactgtcatagtcagtttaTACATCTGGCATGAGgagctacagtagcctacactGTTCACAGAACCAGAGGACCACAACAAGCTAGAGGGAAGACGATGGAAGATTATGCAAGAGGATGCTTAAAATATACTTTGGCAAAAATCACAAGAGACTAGAAAATACTGGAGAAATCTGAAATTTTTTCATGGAATACATTCACA
>TU48062
GGAGGACTAGGGAAGGAGACGGACTAGGGGGAGAAGACGGGAGACAAGAGAGGGGACAAAGACTGTGCCTGATCCCCACCGGATGGGTgctgaaagaggagagaaaggagccATCTTGGGAGATGTTGCCGCGGTACCTAAAATGGCTGGGCTGGCACACGAGGTCTGGATATGGAGTCGTCAGGATTCTGCATACCCTATTGGGGATCCTGGTATGGACCAAACAACCATTAGACAGTTAAAACCATCTCtgtcactgtcatagtcagtttaTACATCTGGCATGAGgagctacagtagcctacactGTTCACAGAACCAGAGGACCACAACAAGCTAGAGGGAAGACGATGGAAGATTATGCAAGAGGATGCTTAAAATATACTTTGGCAAAAATCACAAGAGACTAGAAAATACTGGAGAAATCTGAAATTTTTTCATGGAATACATTCACA
>TU48063
ACATTCACGGTCAGGTAGGAAATAAGGCCTAGGGTATACCTACAACTAATTAGGCCTTGGAACAAGTTTCGCCAAGTTCCACCTCAAAGGGAGACAAGAGAGGGGACAAAGACTGTGCCTGATCCCCACCGGATGGGTgctgaaagaggagagaaaggagccATCTTGGGAGATGTTGCCGCGGTACCTAAAATGGCTGGGCTGGCACACGAGGTCTGGATATGGAGTCGTCAGGATTCTGCATACCCTATTGGGGATCCTGGTATGGACCAAACAACCATTAGACAGTTAAAACCATCTCtgtcactgtcatagtcagtttaTACATCTGGCATGAGgagctacagtagcctacactGTTCACAGAACCAGAGGACCACAACAAGCTAGAGGGAAGACGATGGAAGATTATGCAAGAGGATGCTTAAAATATACTTTGGCAAAAATCACAAGAGACTAGAAAATACTGGAGAAATCTGAAATTTTTTCATGGAATACATTCACA

Function

NR:

description
hypothetical protein EH28_11197

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473340.2 False 1793 mRNA 0.41 3 39718042 39733618
XR_002473343.2 False 1707 mRNA 0.42 3 39718042 39735940
TU48059 False 671 lncRNA 0.43 3 39719099 39733553
TU48060 False 621 lncRNA 0.44 3 39719099 39735911
TU48061 False 589 lncRNA 0.44 3 39719265 39733637
TU48062 False 455 lncRNA 0.47 3 39719265 39735911
TU48063 True 505 lncRNA 0.46 3 39719265 39733553

Neighbor

gene id symbol gene type direction distance location
LOC110522551 LOC106573324 coding downstream 99374 39596545 ~ 39618668 (-)
LOC110522541 LOC106573325 coding downstream 134859 39580837 ~ 39583183 (-)
LOC110522519 LOC106573326 coding downstream 154813 39553431 ~ 39563229 (-)
LOC110522511 LOC106573329 coding downstream 170303 39543494 ~ 39547739 (-)
si:ch211-59o9.10 LOC106573327 coding downstream 174731 39530168 ~ 39543311 (-)
trnar-ucg NA coding upstream 5473 39741413 ~ 39741485 (-)
kras rask coding upstream 761441 40497381 ~ 40513885 (-)
bhlhe41 LOC106573310 coding upstream 829379 40565319 ~ 40568730 (-)
LOC110522681 LOC106573309 coding upstream 854152 40590092 ~ 40750790 (-)
eea1 LOC106573307 coding upstream 1054130 40790070 ~ 40833456 (-)
G42693 NA non-coding downstream 74220 39592194 ~ 39643822 (-)
G42695 NA non-coding downstream 202116 39515068 ~ 39515926 (-)
G42674 NA non-coding downstream 225177 39492631 ~ 39492865 (-)
G42673 NA non-coding downstream 225521 39492311 ~ 39492521 (-)
G42670 NA non-coding downstream 228637 39489066 ~ 39489405 (-)
G42835 NA non-coding upstream 53030 39788970 ~ 39794020 (-)
G42863 LOC106573315 non-coding upstream 96077 39832017 ~ 39832245 (-)
G42866 NA non-coding upstream 99789 39835729 ~ 39835958 (-)
G42876 NA non-coding upstream 117214 39853154 ~ 39858612 (-)
G42883 NA non-coding upstream 131644 39867584 ~ 39867811 (-)
G41868 NA other downstream 696017 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 1526306 38187488 ~ 38191736 (-)
G40732 NA other downstream 1592317 38125280 ~ 38125725 (-)
G40079 NA other downstream 2001009 37716540 ~ 37717033 (-)
G38855 NA other downstream 3207213 36508538 ~ 36510829 (-)
tspan9a LOC106573177 other upstream 3302788 42852829 ~ 43129052 (-)
G49774 NA other upstream 5984865 45720805 ~ 45721124 (-)
G49962 NA other upstream 6213018 45948958 ~ 45949951 (-)
G51214 NA other upstream 7328834 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 7552999 47288939 ~ 47289681 (-)

Expression


Co-expression Network