G42693


Basic Information

Item Value
gene id G42693
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39592194 ~ 39643822 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU47969
cacatacacaatccatgtctcaattgtctcaaggcttaaaaatccctcTTTAATATGTCTCTTCACtttcatctacactaattgaagtggatttaacaagtgacatcaataaaggatcatagcgtTCCCCTGAtcagtatgtcatggaaagagcaggtgttcttaatgatttaAAGTGGGAAATGCACTCCACAAATTTGCATTGAACAATACATGTGGTAATTTATAACATTAGTTCACAGCACCATCTATAGGTGATCAATGCATACTACATACTATACTGCTGGTCTGTTGTAGTCGTACATACTGTAGGTAGTAGCACATTAACATCAGTGATTTTTCTTCTGCAAAAAACAAGCACACAAGGAATCCTCAAGAAGACTAAACTGATGGGCATCACGGATACATTCAGAGGAAGTTATCCACTCAGTTGTTCTACATCTACAAGACAAACCCAGAGCTAAATTTGTAGATATGCCAAACAGCCATTATGACTTGTTACTCACTTTGTTCTCTAGCATACACTTTAACCCACATGCATGTCTGTGGCAATGGTTGGTTGGATTTTGGTCCCTAGACCACTCAAGTCTCAACAACACCTTTCCCTTGTGTAAGTTCATCTTCTCAGGGACCACATTATGATAAAGAATTATGCATGCACACATACCAGTAGATTGCTATGACACTGATGTGGTTCCTGAGAGTTTAAAACTAATTTCCAGGGACTGTGGGCTATCATCTTAAAACAAGAACAAGTCAATAAAAACTCCCAAGATGCAATACGTACCCTACTTCCTGGTAAACATGTGCTTACAACTCAATGTGTTGCATGGCAATACCTAATTTTGTTTTCTAATGTTAACTAAGTTCAGTTTGCTTTATTGTTTGCTAAAGTAAGAACACTTAACTACTGGATTCACCATATTTCAGATAACTTTCATTGGGTGATTTTATTTATAACAACGATTCAACCCTTAGGACTTCATCAGGCATGATGAATCAATATGATCAATATGTGcagttatatatatacacagcaccagtcaaaagtttggacactcctactcattccagggtttttctttttatCTTTTTcgtactttgtagaataatagtgaagacctcaaaactatgaaataacacatatggaatcatgtagtaaccaaaaaagtggtaaacaaattATTCaaagagattcttcaaagtagccaccctttgccttgataacagatTCCCTTTGAAGAAGTTTTCTCTCAGTGTCCCCTCCCCTGCGGGACGTCTTGACCATTTCTATTCCAATGTATCTCAGAGAACTAATAGGATGTCCAGCTTGTACAAAATGAACAGCAACCAGACGTTTTGTTAATCTTGTATAAACTTCACATCCTATTAGTTCTCTTGAGATAATTTGGAATAGAAATGCTCAAGACGtcacagaggagaggggatgtgcgTATGTTCTTCTTTTGTACGCCAACCATGACCTGTGATgggggtcatgataggggctgcaccaaatgattgatgtattataataattgattatgcttatgttgtattaatagaaggggaagggCTATAAGACCCTCCcactacatttatagggtcctggACCACAGATTAGCAACATATTCATTATGTTTAATACTGTTCCACAGTTCTTTTCTAGTCTCTGCCTCTTATAAGAAACGGTCTGAGAGATGTGTGAGTTATTGCAGTCAAAAAACAGGGTGTCTGTGAGAAAGCGCCTCAAGGCTAAAAGAGATACATAGTCAGACACACCATTGTAAACCATACGGGAATGGAAAATTACTGCTGAGCCCTTAGAAAACACTGGGCTATTGTTTTCTCCTGCAAGTTTGTATAACTGTAtatgcatgggcttggtctcATTAGTAGAAGGTATTGACGTAGGCAGTTACATCACTAGGGGTTGACTGCAAGCATATTAAAGCAactgatattttttattttgcagAACTTACTCTGAAACATGTGTGCTATGTTTCcattgtcaacttctgtctgcaattgcattaataaaggtttgaTTGATTTACTTAAAGAAGATATTGTCTGATTGCTGATTTCACCAATaagccaatgattgacaaggaaccTACCCCAACACCTGCCACC

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU47969 True 2139 lncRNA 0.52 2 39592194 39643822

Neighbor

gene id symbol gene type direction distance location
LOC110522541 LOC106573325 coding downstream 9011 39580837 ~ 39583183 (-)
LOC110522519 LOC106573326 coding downstream 28965 39553431 ~ 39563229 (-)
LOC110522511 LOC106573329 coding downstream 44455 39543494 ~ 39547739 (-)
si:ch211-59o9.10 LOC106573327 coding downstream 48883 39530168 ~ 39543311 (-)
c1h15orf40 cssa16h15orf40 coding downstream 106185 39481601 ~ 39486010 (-)
LOC110522570 NA coding upstream 74220 39718042 ~ 39735940 (-)
trnar-ucg NA coding upstream 97591 39741413 ~ 39741485 (-)
kras rask coding upstream 853559 40497381 ~ 40513885 (-)
bhlhe41 LOC106573310 coding upstream 921497 40565319 ~ 40568730 (-)
LOC110522681 LOC106573309 coding upstream 946270 40590092 ~ 40750790 (-)
G42695 NA non-coding downstream 76268 39515068 ~ 39515926 (-)
G42674 NA non-coding downstream 99329 39492631 ~ 39492865 (-)
G42673 NA non-coding downstream 99673 39492311 ~ 39492521 (-)
G42670 NA non-coding downstream 102789 39489066 ~ 39489405 (-)
G42668 NA non-coding downstream 103746 39488032 ~ 39488448 (-)
G42835 NA non-coding upstream 145148 39788970 ~ 39794020 (-)
G42863 LOC106573315 non-coding upstream 188195 39832017 ~ 39832245 (-)
G42866 NA non-coding upstream 191907 39835729 ~ 39835958 (-)
G42876 NA non-coding upstream 209332 39853154 ~ 39858612 (-)
G41868 NA other downstream 570169 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 1400458 38187488 ~ 38191736 (-)
G40732 NA other downstream 1466469 38125280 ~ 38125725 (-)
G40079 NA other downstream 1875161 37716540 ~ 37717033 (-)
G38855 NA other downstream 3081365 36508538 ~ 36510829 (-)
tspan9a LOC106573177 other upstream 3394906 42852829 ~ 43129052 (-)
G49774 NA other upstream 6076983 45720805 ~ 45721124 (-)
G49962 NA other upstream 6305136 45948958 ~ 45949951 (-)
G51214 NA other upstream 7420952 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 7645117 47288939 ~ 47289681 (-)

Expression


Co-expression Network