bhlhe41 (LOC106573310)


Basic Information

Item Value
gene id bhlhe41
gene name LOC106573310
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 40565319 ~ 40568730 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601141.2
CACTCTCGCACAAACTGCTCGCAAAGTGGCAGTTGAGGAAAATAGACAGCATTCTAAAGCGCAGCACTATCGAGAATAGTCGCCGTGTAACATCTTCCCAAACCTTCTCTGTCTGCTGGTTTTGGAATAACAAACATTGTAAAGACAAAGTGGAATAGCCTACCGACAAGTTATGGATGAAAGAATACCGCGTCTGCAAGACAGACAATTTACTGATCATGAACATTTTTTAGGGTTGGAATACTCCTCACTCTACATGTGTAAATCGAAAAGAGGACTGAAGCGCGAAGATGGCAAGGACGCGTACAAGTTACCACACCGATTgatagagaagaagaggagagacagaatcaATGAATGTATCGGACAGCTGAAGGATTTGTTACCCGAACATCTCAAATTGACGACGCTCGGGCATTTGGAGAAAGCGGTTGTTCTCGAGTTAACTTTGAAGCATTTAAACGCTTTGACTGCAGTCACTGAGCAACAACACCAGAAGATTATTGCTTTGCAGAATGGGGATCGATCGATGAAGACGTCCGTTCACGCTGATTTGGATGCGTTCCACTCCGGATTCCAAGCATGTGCCAAAGAGGTCCTGCAGTACCTCAACAAGTTCGATAACTGGAATATGCGCGAGCAGCGGTGCGCGCAGCTCATCAACCACTTGCACAAAGTATCTGCGCAAATTCAGCCCAGTGCGCCAATACTCCATTCCCAGCAACCTGCCGGAGACGTGCTGGAGCGCGATGGCCAGAAAGCTGAAATCCAAGCTGGACATGACCGCGTATCGGTCATACAGAGGAGCCACGGGGAGCTTAACGAgaatgacacagacacagacagtggatACGGGGGTGAGGCGGAAAAGACCGATGGGAATAAAGGATGTGACCGTAGCAAAGCAGTGAAGATAAAGCAGGAGTTCGGGGATGAACGCGCAGCCAAAAAAACGAAGATGAACTGGGCTGGAAACGGTACGACGGGCGCAGACACGACCACCAGACCTGATCTGGCCTTTATGAACTCTTTGATGGGAATAACTGGCGTGGGACAGCAGACTCCATTTTGCATGCCTTTTTACTTCATCAATCCCTCTGCAGCAGCGACCTACATGCCGCTATTCGACAAAAGTAACCTAGAGAAGTTTGTGTACCCTGCTGCGGCAGCAGCAGCTCTCTCAGCACCGTTTCCATGGTTATACCCCAGCCTTAACTCACACGCTTCGGCAACTGCAGCGGCTGCCGCAGGTGCTTTCTCCGGTATGTCGACAGAGAAGAGCTCTGGATTCGGTTCCAACTCCAAGCACTCTCTCTCTGACGACAGTGACATGTCAAACGTGGAGCCGGGCTCacctgaggagagggaggacaaccCTGAgaatgatgttgatgatgatgatgatgatgatgatgatgatgatgatgatggtattaGGGAACGACTCCCCAGACAATGAAAATGACTGTACATAATGAAGATAACATTAGATTTTATTTCTTGTAAAAACGGTCTAATTTACCTGTGTAGCCTATATCCTAATTGGATCTACATTCTGCATATTATTTTGTTTAGGATTTTCTGATAGCTGTCTGTTTTTACCTTATTTTCATATTTTAAATGATTGTCATTGATAGTAGGAGTTTCGAGACAAGTTTCACAGTTGAATTTCTCCTTTATTTTGGCCAGGCAGGGGGAAGTTGTGACAGTTTGTGCCTTTTGCACTTAATGCAAGAGTAATCTGAATGATAATCGACAATGATTGACACTAACAACATGCACACATCTGTTATTACTACAGTCCTAGGGTATATTGAGCTGGAGTTAGTTTTTCCATTGACACAACCTTTAAAACTGGCAATATCAGTGCCAAAACATCAAGATAAACAATCTGCTTCTATGCGCAGTATTGTCCTCAGATCCCCAATCAGATACTAGTCACATTGGATGTATGGAGTTGCAAATGACCTCTACCAAGGTTAGAATCAACATTGCTGACTGACTACAGTATGACTAATGGTGATAGATGTGTTTTGATCCATTTCCTTGTACATATGAACTAAATTgacccccccatacacacacaaattacTAACTAACTGGATACATGACTACGTATTATGTAACTCCCTATCCATGCCAACACGTTTTGATTTGTCTATTTAGTCTTCTGGAATTTTCAATCACCTCCTCAAATAAGTTTTTCTGACTGCTGATATTTGGCATGTTGAAAAGAAGCACTTCATTGGAAGATGCTGGTTTTATGACAATTGACAATTATGTCCCTGATTGGTTGGCATCTCTGCACATATAATGAGACACCGCGGGACCTGTCGGCTACCTCCAGCAAAATGATACTAGATATGATATAGCACCTTATAGAACTTTGATATTGAATGTAACTACCTGTGTATTTCTTAGCTCTGGAAGTTTGTATGTATAGGATTAACGTGTAGTTCTTTACTATTTGAGAGATAAAGTGCACTTGTTTCTGCCTTTGGAAAATCCCCCCCTGTTCCCTCCCAACACTCACTTTCCAACTATTCTAGTCTATCACTGTATCTATTTTTAGAAAATAACTAAACTAGAGGGCAGACATGTTACTCCAGACTGTACAGACTGTCAATGTGTTTGAAGAACCAGATACTAGGCTACTACAGATATTGAAGCTTTTTAGTGATTTTGTGCAGACCTTATAAGCCACTAATCATAGCTCGTTTTTGGGTAATAAGTCTTATTGTACTTATACAGCTACATGATACAACTGATACTCAGCCTCAGAATGAAGAAGTAGCTGTTGTATCACATt

Function

NR:

description
class E basic helix-loop-helix protein 41-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K03730 BHLHB3, DEC2; class B basic helix-loop-helix protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601141.2 True 2809 mRNA 0.43 5 40565319 40568730

Neighbor

gene id symbol gene type direction distance location
kras rask coding downstream 51434 40497381 ~ 40513885 (-)
trnar-ucg NA coding downstream 823834 39741413 ~ 39741485 (-)
LOC110522570 NA coding downstream 829379 39718042 ~ 39735940 (-)
LOC110522551 LOC106573324 coding downstream 946651 39596545 ~ 39618668 (-)
LOC110522541 LOC106573325 coding downstream 982136 39580837 ~ 39583183 (-)
LOC110522681 LOC106573309 coding upstream 21362 40590092 ~ 40750790 (-)
eea1 LOC106573307 coding upstream 221340 40790070 ~ 40833456 (-)
nudt4a LOC106573306 coding upstream 280786 40849516 ~ 40879189 (-)
ube2na ube2n coding upstream 311751 40880481 ~ 40904825 (-)
LOC110522782 LOC106573302 coding upstream 352209 40920939 ~ 40943817 (-)
G44006 NA non-coding downstream 70804 40494284 ~ 40494515 (-)
G43685 NA non-coding downstream 81799 40483284 ~ 40483520 (-)
G43673 NA non-coding downstream 91622 40473481 ~ 40473697 (-)
G43632 NA non-coding downstream 101680 40463046 ~ 40463639 (-)
G43628 NA non-coding downstream 183731 40380309 ~ 40381588 (-)
G44076 NA non-coding upstream 36381 40605111 ~ 40646515 (-)
G44160 NA non-coding upstream 217991 40786721 ~ 40787377 (-)
G44204 NA non-coding upstream 290523 40859253 ~ 40859577 (-)
G44212 NA non-coding upstream 300825 40869555 ~ 40869767 (-)
G41868 NA other downstream 1543294 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 2373583 38187488 ~ 38191736 (-)
G40732 NA other downstream 2439594 38125280 ~ 38125725 (-)
G40079 NA other downstream 2848286 37716540 ~ 37717033 (-)
G38855 NA other downstream 4054490 36508538 ~ 36510829 (-)
tspan9a LOC106573177 other upstream 2469998 42852829 ~ 43129052 (-)
G49774 NA other upstream 5152075 45720805 ~ 45721124 (-)
G49962 NA other upstream 5380228 45948958 ~ 45949951 (-)
G51214 NA other upstream 6496044 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 6720209 47288939 ~ 47289681 (-)

Expression


Co-expression Network