RNA id: XM_021601141.2


Basic Information

Item Value
RNA id XM_021601141.2
length 2809
RNA type mRNA
GC content 0.43
exon number 5
gene id bhlhe41
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 40565319 ~ 40568730 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTCTCGCACAAACTGCTCGCAAAGTGGCAGTTGAGGAAAATAGACAGCATTCTAAAGCGCAGCACTATCGAGAATAGTCGCCGTGTAACATCTTCCCAAACCTTCTCTGTCTGCTGGTTTTGGAATAACAAACATTGTAAAGACAAAGTGGAATAGCCTACCGACAAGTTATGGATGAAAGAATACCGCGTCTGCAAGACAGACAATTTACTGATCATGAACATTTTTTAGGGTTGGAATACTCCTCACTCTACATGTGTAAATCGAAAAGAGGACTGAAGCGCGAAGATGGCAAGGACGCGTACAAGTTACCACACCGATTgatagagaagaagaggagagacagaatcaATGAATGTATCGGACAGCTGAAGGATTTGTTACCCGAACATCTCAAATTGACGACGCTCGGGCATTTGGAGAAAGCGGTTGTTCTCGAGTTAACTTTGAAGCATTTAAACGCTTTGACTGCAGTCACTGAGCAACAACACCAGAAGATTATTGCTTTGCAGAATGGGGATCGATCGATGAAGACGTCCGTTCACGCTGATTTGGATGCGTTCCACTCCGGATTCCAAGCATGTGCCAAAGAGGTCCTGCAGTACCTCAACAAGTTCGATAACTGGAATATGCGCGAGCAGCGGTGCGCGCAGCTCATCAACCACTTGCACAAAGTATCTGCGCAAATTCAGCCCAGTGCGCCAATACTCCATTCCCAGCAACCTGCCGGAGACGTGCTGGAGCGCGATGGCCAGAAAGCTGAAATCCAAGCTGGACATGACCGCGTATCGGTCATACAGAGGAGCCACGGGGAGCTTAACGAgaatgacacagacacagacagtggatACGGGGGTGAGGCGGAAAAGACCGATGGGAATAAAGGATGTGACCGTAGCAAAGCAGTGAAGATAAAGCAGGAGTTCGGGGATGAACGCGCAGCCAAAAAAACGAAGATGAACTGGGCTGGAAACGGTACGACGGGCGCAGACACGACCACCAGACCTGATCTGGCCTTTATGAACTCTTTGATGGGAATAACTGGCGTGGGACAGCAGACTCCATTTTGCATGCCTTTTTACTTCATCAATCCCTCTGCAGCAGCGACCTACATGCCGCTATTCGACAAAAGTAACCTAGAGAAGTTTGTGTACCCTGCTGCGGCAGCAGCAGCTCTCTCAGCACCGTTTCCATGGTTATACCCCAGCCTTAACTCACACGCTTCGGCAACTGCAGCGGCTGCCGCAGGTGCTTTCTCCGGTATGTCGACAGAGAAGAGCTCTGGATTCGGTTCCAACTCCAAGCACTCTCTCTCTGACGACAGTGACATGTCAAACGTGGAGCCGGGCTCacctgaggagagggaggacaaccCTGAgaatgatgttgatgatgatgatgatgatgatgatgatgatgatgatgatggtattaGGGAACGACTCCCCAGACAATGAAAATGACTGTACATAATGAAGATAACATTAGATTTTATTTCTTGTAAAAACGGTCTAATTTACCTGTGTAGCCTATATCCTAATTGGATCTACATTCTGCATATTATTTTGTTTAGGATTTTCTGATAGCTGTCTGTTTTTACCTTATTTTCATATTTTAAATGATTGTCATTGATAGTAGGAGTTTCGAGACAAGTTTCACAGTTGAATTTCTCCTTTATTTTGGCCAGGCAGGGGGAAGTTGTGACAGTTTGTGCCTTTTGCACTTAATGCAAGAGTAATCTGAATGATAATCGACAATGATTGACACTAACAACATGCACACATCTGTTATTACTACAGTCCTAGGGTATATTGAGCTGGAGTTAGTTTTTCCATTGACACAACCTTTAAAACTGGCAATATCAGTGCCAAAACATCAAGATAAACAATCTGCTTCTATGCGCAGTATTGTCCTCAGATCCCCAATCAGATACTAGTCACATTGGATGTATGGAGTTGCAAATGACCTCTACCAAGGTTAGAATCAACATTGCTGACTGACTACAGTATGACTAATGGTGATAGATGTGTTTTGATCCATTTCCTTGTACATATGAACTAAATTgacccccccatacacacacaaattacTAACTAACTGGATACATGACTACGTATTATGTAACTCCCTATCCATGCCAACACGTTTTGATTTGTCTATTTAGTCTTCTGGAATTTTCAATCACCTCCTCAAATAAGTTTTTCTGACTGCTGATATTTGGCATGTTGAAAAGAAGCACTTCATTGGAAGATGCTGGTTTTATGACAATTGACAATTATGTCCCTGATTGGTTGGCATCTCTGCACATATAATGAGACACCGCGGGACCTGTCGGCTACCTCCAGCAAAATGATACTAGATATGATATAGCACCTTATAGAACTTTGATATTGAATGTAACTACCTGTGTATTTCTTAGCTCTGGAAGTTTGTATGTATAGGATTAACGTGTAGTTCTTTACTATTTGAGAGATAAAGTGCACTTGTTTCTGCCTTTGGAAAATCCCCCCCTGTTCCCTCCCAACACTCACTTTCCAACTATTCTAGTCTATCACTGTATCTATTTTTAGAAAATAACTAAACTAGAGGGCAGACATGTTACTCCAGACTGTACAGACTGTCAATGTGTTTGAAGAACCAGATACTAGGCTACTACAGATATTGAAGCTTTTTAGTGATTTTGTGCAGACCTTATAAGCCACTAATCATAGCTCGTTTTTGGGTAATAAGTCTTATTGTACTTATACAGCTACATGATACAACTGATACTCAGCCTCAGAATGAAGAAGTAGCTGTTGTATCACATt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K03730 BHLHB3, DEC2; class B basic helix-loop-helix protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49349 lncRNA downstream 70804 40494284 ~ 40494515 (-) True G44006
TU49010 lncRNA downstream 81799 40483284 ~ 40483520 (-) True G43685
TU48998 lncRNA downstream 91622 40473481 ~ 40473697 (-) True G43673
TU48955 lncRNA downstream 101680 40463046 ~ 40463639 (-) True G43632
TU48951 lncRNA downstream 183731 40380309 ~ 40381588 (-) True G43628
TU49431 lncRNA upstream 36381 40605111 ~ 40646515 (-) True G44076
TU49519 lncRNA upstream 217991 40786721 ~ 40787377 (-) True G44160
TU49518 lncRNA upstream 280972 40849702 ~ 40858845 (-) True nudt4a
TU49571 lncRNA upstream 290523 40859253 ~ 40859577 (-) True G44204
TU49579 lncRNA upstream 300825 40869555 ~ 40869767 (-) True G44212
XM_021601094.2 mRNA downstream 51434 40497381 ~ 40513885 (-) True kras
XM_021601102.2 mRNA downstream 51439 40497381 ~ 40513880 (-) False kras
trnar-ucg mRNA downstream 823834 39741413 ~ 39741485 (-) True trnar-ucg
XR_002473343.2 mRNA downstream 829379 39718042 ~ 39735940 (-) False LOC110522570
XR_002473340.2 mRNA downstream 831701 39718042 ~ 39733618 (-) False LOC110522570
XM_036977393.1 mRNA upstream 21362 40590092 ~ 40750790 (-) False LOC110522681
XM_036977399.1 mRNA upstream 21362 40590092 ~ 40750790 (-) True LOC110522681
XM_036977412.1 mRNA upstream 221340 40790070 ~ 40833450 (-) False eea1
XM_021601186.2 mRNA upstream 221340 40790070 ~ 40833456 (-) True eea1
XM_021601223.2 mRNA upstream 280786 40849516 ~ 40879189 (-) False nudt4a
TU47067 other downstream 1543294 39021805 ~ 39022025 (-) True G41868
TU45924 other downstream 2373583 38187488 ~ 38191736 (-) True G40768
TU45886 other downstream 2439594 38125280 ~ 38125725 (-) True G40732
TU45214 other downstream 2848286 37716540 ~ 37717033 (-) True G40079
TU43930 other downstream 4054490 36508538 ~ 36510829 (-) True G38855
TU52237 other upstream 2469998 43038728 ~ 43129029 (-) True tspan9a
TU55610 other upstream 5152075 45720805 ~ 45721124 (-) True G49774
TU55801 other upstream 5380228 45948958 ~ 45949951 (-) True G49962
TU57229 other upstream 6496044 47064774 ~ 47119033 (-) False G51214
TU57327 other upstream 6720209 47288939 ~ 47289681 (-) True G51285

Expression Profile