RNA id: XM_021601102.2


Basic Information

Item Value
RNA id XM_021601102.2
length 3592
RNA type mRNA
GC content 0.41
exon number 5
gene id kras
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 40497381 ~ 40513885 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCCCTGCTTTGCTTTCTGGGTAAACTGTACGACGCTGCACCCGGTATCCGCCCATATTCGCGTCAGGCCAACCTCAGCTGAATCGAGAGTAGCAGGCCAAACGCTGTATCAAATGGAAAGTTAAATCGATTAATGTCCTTACTTTTGTCTGCTTTTTTAAAAGAATATACATTTACACAAATGCGGCCGTTTCAGTGTAAAGTAGGAAATGCAGAGATCGTGTGAAAAAGGAGGATTATCTGCTTGACTTCTTATTTGGTCGCTACTTCGGACGCGGAACTCCACACGCTATAGGTGAACGATGACCGAATACaagctggtggtggtgggggcagGAGGTGTGGGCAAGAGCGCGCTCACCATCCAGCTCATCCAGAATCACTTTGTGGATGAATATGACCCCACCATCGAGGACTCATACAGGAAGCAGGTGGTGATTGACGGGGAGACGTGTCTGCTGGACATCCTGGACACTGCAGGTCAGGAGGAGTACAGCGCCATGAGGGACCAGTACATGAGGACAGGGGAGGGCTTCCTCTGTGTCTTTGCCATCAACAACACAAAGTCCTTCGAGGACATCCACCACTATAGAGAGCAGATCAAGCGGGTGAAAGACTCGGAAGACGTGCCCATGGTGCTGGTGGGAAACAAGTGTGACCTGCCGTCCCGGACGGTGGACACCAAACAGGCTCAGGACTTGGCGCGCAGCTATGGCATCCCCTTCATCGAGACCTCGGCCAAAACCAGACAGGGTGTCGATGATGCATTTTACACATTAGTGCGGGAAATCCGAAAACACAAGGAGAAGATGAGCAAGGAGggcaagaagaagaaaaagaagtcCAAGACAAAGTGTATACTCATGTGAATAATGACCAGCCCCCTTTTCAAGatagacaaaaaaaaatgtgttaaaacAGTTCAAGTAATACATTTTTGTACATTACGCTAAATTATTAGCCTCTTTATCTTAGCACCCAAAATACTGAATATGGAAATGAACCCTATTTTTCTGCCCTTTtctcttattttgaaaccaatAAGCTTTACTTTCTGTTTAGTGCCAGTTGCCCAGAAGTGTTGGTCCAATAGGTTGATTATCAATTAGGAGATGGTAGACAGTAAAACGAAAGGACTTTATTCAACAGCCAAGTTCATAACTGTAGGAAATTTTGGACAACAGAAAAAGCAAGCCTAAAAAGCTTATTTTCCCTCTGCTGGAGAGCATGAGATGCTCTTAACAGTAAGGGGTGCCAAATAGTTGAATCCCATTCCATTGGACAAGGAGTAACAACTGGGAGGCAGGACCAACACTTGATTGGGGGAAATTCCAAATGTCCCGGCCACTGTGTGTAATAATGCCCATCCTCCGACTTTAAACTCCTAGATATGATTCAATAATGTCATGCTGTACTTGAAGCATGCATGTGAACTTTACTACTGTATCTAGTTAAAAAAAATGTCCTGGTTAGCCATTTTAATTAAGTTGTAATCTGTTAATGCTTTTTTGTCATTTGGGGGTAGTGATTTCCTGCCTACAGGACTTTCATTTTTGCATGCAATGTGTTCTTACTAGTCAATGGGGAATGGCACAGTGATACTAATACTGTACGATACTGATACAGCCACTAGGGCCAGGAACGAGGAGCTCCTGTCCAGTTGGGCCACATAGGCTTTTATAGTGTTTCGGGCCTCAAGTCAATCTATATTCACCATACCTGATCAGATCTTTTGGGTAGAAACCAGTTGTTAAATGGTGGGAAACCTTTTCAACAACTGAAACGCTCCAGGTGGCAGGTATGaagcaaaataatgtttttttttttacataggtaTCAGAACAGCAAGATTCTCAGTAGTGTTGAAGAGGACATGCAGCTCATGTTGTGTTGCTCAGTGGCACCGCATATTGCTTATACAAACGCCTCTACACAATCCAGTGTCTCCTGTAGTTTTATCATGAACGTTTTAAAAGTTGAGTTAATTGTTCATCAAGAGATCTTGTTTGCGTGATGAAATTCCCCTCATCTCCTCAGGATTGGTGTATTTTGTGTCGTGTTCTGTGTTTTTGAAAGACAAACCTTTCCCATTCAAGTGATTTTACTGAAGTAACACATTTTTACCTCTTAGTTAATCAATCAGTAAATCAAGATTGGGGCTTCCTTGTTACAGCGTAACATCCAAATTTGTTTTGAGTGCAAACAAGTAGCAGGCCTAAATTAAGCCTAAACTTTAAACCAAGTAATCTAATGATGTATATGTGTTATTCAGGTGAACTGTCTTAAAGAATAGTGAGTTACTGTATTCAGATGCGAGACATAAGATACCCCGTCAGATTCTAACAGAATATGCCTTGCACATTTCCCCAAGCCTCTGTACTTATTGCTGCCATAAACGTACTTTCCTATTTTTGGATTGGCTAGATTAGGCAAAGAAAATCTTAAAggcctttttttgttttttgtcctACTACAGATCTTCCTTTctctattttttgttttgttttacttcTACAAAAGATGCACCCCCGTAGAATCGTTGTCATGCAAAGAGTGTTCAAAAATGTATTGTTCATATAAATTTCTCATTCTTCCTCGTGAAGTTAGATTTTTTGGGTTAGAGCTTGGGTGGGAAGGTGTTGAGTGGGTTTTGCTGGGCTGTGTTTCAAGTGAAATGACTGGTCCAGTCCAATAGTCTTTGTCAAATGTATTCCTTACAAAGGTTGTTGCTTCCTTGTGATGTAACTGGAGCTGATGTCTGTAAATGAGGCAATTACCATTAAATTCATTTTTAGAGGGGAAAAAAgtgttaatttataaaaacacGGAAAAGTTGTTTTTTCAGCGTTATTTCACAACCTTAAAACCAGGGTTTTACCTTGAGGCTTCTTACACATTGCCTTTTGTGCTTGCATCGAGTGCTTCAGTCAGATAGCCGCGGGATACATGTGAGCCCAGACTGCATTAGGCTTCTTTGCCACGTCTGTTCAACTGCTACAAACTCTGCTGTTTGAGAGGAATGAGATTCTAAAGTGAAACAtaatatacaatacatttatttagGATTTATGCTTTTTTGGCCCATTTTATTACCTCCTTGTTCCTAATGTTAGATATGAACTGTTAGCACATTTTTGATTATGGGACGCCATTTTGTTAACAATACTGTATCACAAAAAGTCATTCTACCAAAATGTTCCCCCTCCCTTTTATTTTGCGTGCCAACTGCTGATTTCTGAAAAAGAAGTAGCATTTATACCTGGATCGTATTTTAACAACCTTTTTGTATAGTTGTTATACTGAAAGGTGCACATTTTGTAAATTGTGCTTCATTTCTTTGGTGTGTCTAAATGAATGTTGCTTTAATGGAGTTTTCAGTACTATCTCTTTTGTGTATGATGGGACTTGGGAGAGTGACTGGGTCCAGGTCTAGGGGAGTGAATGAATGACCACGGTTGAACACATCCATAGAGAGCTCTCTTTGGTCACTGTGTAGAGTGGTGATCTGATCCCAAATctgtcttttttttgttgccatgaATCTCACCACTCCTATTTAATGTGtaataaagacaaaacaattaAGAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49349 lncRNA downstream 2866 40494284 ~ 40494515 (-) True G44006
TU49010 lncRNA downstream 13861 40483284 ~ 40483520 (-) True G43685
TU48998 lncRNA downstream 23684 40473481 ~ 40473697 (-) True G43673
TU48955 lncRNA downstream 33742 40463046 ~ 40463639 (-) True G43632
TU48951 lncRNA downstream 115793 40380309 ~ 40381588 (-) True G43628
TU49431 lncRNA upstream 91231 40605111 ~ 40646515 (-) True G44076
TU49519 lncRNA upstream 272841 40786721 ~ 40787377 (-) True G44160
TU49518 lncRNA upstream 335822 40849702 ~ 40858845 (-) True nudt4a
TU49571 lncRNA upstream 345373 40859253 ~ 40859577 (-) True G44204
TU49579 lncRNA upstream 355675 40869555 ~ 40869767 (-) True G44212
trnar-ucg mRNA downstream 755896 39741413 ~ 39741485 (-) True trnar-ucg
XR_002473343.2 mRNA downstream 761441 39718042 ~ 39735940 (-) False LOC110522570
XR_002473340.2 mRNA downstream 763763 39718042 ~ 39733618 (-) False LOC110522570
XM_021601007.2 mRNA downstream 878713 39596545 ~ 39618668 (-) True LOC110522551
XM_021600996.2 mRNA downstream 914198 39580837 ~ 39583183 (-) True LOC110522541
XM_021601141.2 mRNA upstream 51439 40565319 ~ 40568730 (-) True bhlhe41
XM_036977393.1 mRNA upstream 76212 40590092 ~ 40750790 (-) False LOC110522681
XM_036977399.1 mRNA upstream 76212 40590092 ~ 40750790 (-) True LOC110522681
XM_036977412.1 mRNA upstream 276190 40790070 ~ 40833450 (-) False eea1
XM_021601186.2 mRNA upstream 276190 40790070 ~ 40833456 (-) True eea1
TU47067 other downstream 1475356 39021805 ~ 39022025 (-) True G41868
TU45924 other downstream 2305645 38187488 ~ 38191736 (-) True G40768
TU45886 other downstream 2371656 38125280 ~ 38125725 (-) True G40732
TU45214 other downstream 2780348 37716540 ~ 37717033 (-) True G40079
TU43930 other downstream 3986552 36508538 ~ 36510829 (-) True G38855
TU52237 other upstream 2524848 43038728 ~ 43129029 (-) True tspan9a
TU55610 other upstream 5206925 45720805 ~ 45721124 (-) True G49774
TU55801 other upstream 5435078 45948958 ~ 45949951 (-) True G49962
TU57229 other upstream 6550894 47064774 ~ 47119033 (-) False G51214
TU57327 other upstream 6775059 47288939 ~ 47289681 (-) True G51285

Expression Profile