RNA id: XM_021600996.2


Basic Information

Item Value
RNA id XM_021600996.2
length 1600
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110522541
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39580837 ~ 39583183 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATTGAATTTGTCTATTTCTCGACGCAGCCTTCTTCTCTACTAACGTTGTGAAAAACCTTCCTCCACACTTATCAAATAGGCTAGTTTCTGAGTCGAATTTATCCAGACTTTTTATTTGATTACACATCGGTCTGTAATCACAAACCAGTAAATCATTCATAGTAAGAAACGCCGTATATTGTTTCATTTAAATGTGGATTATATAAATAGGGCTCTTCACGAAGGAGGACGAGGGATCGAGGGACGCCGCCATATTTGCTCTTGCTAGCTAGTGCACTACAAGATACGGGCTTTGTTTCGAGTACCCTTCAATTTAGTACCCTTGTATTTGTTCATGATGGATGCGATGGATAAAAGACCTTTTGGTGCAGAATATAACTATAAAATGTCGGAAAATGACATATCCAGATTAATAAAATTGCGTGCAACGAATGACGCCATCTTCACTGGGAAGAGAAACTCTGCCATGCCTGCCTGGAGAGCAATGTTAGTAGAGTTGGGTCTCGAAGGGAAGCTAACAACCGGGCAATTGAAAAAGAAGTGGGAAAACCTTAAAAAGAAATATAAGGATTTTAAGTACCCTCCTCTTGGCATGGAGAAAGTCAATCCAATGTCCTGGCGTTGGTTTCACCTCATGGACGATGCCATCGAGGGCCGCCTAGCTGGGTCTGCCCGTATCCTAAACCCTTCACTGTTTGATTTTGGGGAAGTTGGGGACGTTTCATTTGCGTCCTCTCCCACTACCTCTCCCATAGCCAACAAGAGACTATGTATGAGGCCGGAGGGAGGTGAGGGAACAAACATTTTTGAGTTCTGGgccaaggcacagctgggggagagTGTTGGTGCTGCGAGCACGGTAGCAGATGGACAGGTGGCATACACAGACGCAGCTACAGAGGAGATCCGGAGGGCAGCGGTGGAGTGCGAGAGGGCCCTGCGAGAGGAGGGCAGGGGTGCAGCTCAGAATGAGAGGGCCGCGCCTGACAAGATGCCAGTGGGTGGGTACGGGAGGACCATGGCTGAGGATGTGGAGACCATAGCTGAAGACGGAAGAGCCATGTTGGTGAGAAACCCTGGCAGGAACATTGAGAGGGAGACTGCTGAACTAGAGAGGCAGATAGCAGATTTGGAGAAGGAGCGAGAAGTGCTAGAGAGGGAGCAGGCAGACtttgacagggagaggttgatactggacagagagagggatgtggtGAGCAGAGAGCGGGTGGCTGTTGAGCGAGGCAGAGCTTCACTAGACAAGGACAGAGCAGCGATGGACAGGGAGCGAGCAGCAATGGAACGGGAGCGAGCCATACTGGACAGGGATAGAGCGtcaatcgagagagagagggcagagctgCAGAAAGAAAAGGAAGCCCTAATGAAAAGCAAGGTTTCCAGGAACAACGGCTCCACTGATGTGGAACTGGACTCATCCACTATAGAAAAAAGAGAGAAACTGCTTTCCATATTTGAGAGACTTGTTGATAAGCTGTGAAAGATGAACAATGAGTAAAGGTTGAATAGGTGAAGGATGTACTGTAGGTGAGAGTGCGCACAAGTCATAAACAGGTTTCTATGTCACCAGTCCCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47971 lncRNA downstream 64911 39515068 ~ 39515926 (-) True G42695
TU47947 lncRNA downstream 87972 39492631 ~ 39492865 (-) True G42674
TU47946 lncRNA downstream 88316 39492311 ~ 39492521 (-) True G42673
TU47943 lncRNA downstream 91432 39489066 ~ 39489405 (-) True G42670
TU47941 lncRNA downstream 92389 39488032 ~ 39488448 (-) True G42668
TU47969 lncRNA upstream 9011 39592194 ~ 39643822 (-) True G42693
TU48059 lncRNA upstream 135916 39719099 ~ 39733553 (-) False LOC110522570
TU48060 lncRNA upstream 135916 39719099 ~ 39735911 (-) False LOC110522570
TU48061 lncRNA upstream 136082 39719265 ~ 39733637 (-) False LOC110522570
TU48062 lncRNA upstream 136082 39719265 ~ 39735911 (-) False LOC110522570
XM_021600969.2 mRNA downstream 17608 39553431 ~ 39563229 (-) False LOC110522519
XM_036977291.1 mRNA downstream 17608 39553431 ~ 39563229 (-) True LOC110522519
XM_021600984.2 mRNA downstream 17647 39553431 ~ 39563190 (-) False LOC110522519
XM_021600976.2 mRNA downstream 17676 39553431 ~ 39563161 (-) False LOC110522519
XM_021600958.2 mRNA downstream 33098 39543494 ~ 39547739 (-) True LOC110522511
XM_021601007.2 mRNA upstream 13362 39596545 ~ 39618668 (-) True LOC110522551
XR_002473340.2 mRNA upstream 134859 39718042 ~ 39733618 (-) False LOC110522570
XR_002473343.2 mRNA upstream 134859 39718042 ~ 39735940 (-) False LOC110522570
trnar-ucg mRNA upstream 158230 39741413 ~ 39741485 (-) True trnar-ucg
XM_021601102.2 mRNA upstream 914198 40497381 ~ 40513880 (-) False kras
TU47067 other downstream 558812 39021805 ~ 39022025 (-) True G41868
TU45924 other downstream 1389101 38187488 ~ 38191736 (-) True G40768
TU45886 other downstream 1455112 38125280 ~ 38125725 (-) True G40732
TU45214 other downstream 1863804 37716540 ~ 37717033 (-) True G40079
TU43930 other downstream 3070008 36508538 ~ 36510829 (-) True G38855
TU52237 other upstream 3455545 43038728 ~ 43129029 (-) True tspan9a
TU55610 other upstream 6137622 45720805 ~ 45721124 (-) True G49774
TU55801 other upstream 6365775 45948958 ~ 45949951 (-) True G49962
TU57229 other upstream 7481591 47064774 ~ 47119033 (-) False G51214
TU57327 other upstream 7705756 47288939 ~ 47289681 (-) True G51285

Expression Profile