RNA id: XM_021600976.2


Basic Information

Item Value
RNA id XM_021600976.2
length 2857
RNA type mRNA
GC content 0.50
exon number 14
gene id LOC110522519
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39553431 ~ 39563229 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCTTCTCGGATCGTGCACAACCCTAACTAGATAGGAATACAGAAACTGCATAACAACTTTTGTTAAAAATCTGGTGCAAATGGAGTCAACGATGGACCCAACGCCTAATGTCACAGATAACTTGTATAAAATGACTGAAGAGGACGTCAAGAGGTTAATAGAACTGCGTTCCTCCAATGAGGCTCTTTTCACAGGAAAAAGAAATGCTGCCAAGGTTGCCTGGAATGCAATTCTAAAGGGATTAGGTCTTGAGGGAAAGCTGACAGCTGACCAGATTGCCAAAAAGTGGGAAAATCTGAAGACTAGATACAAGGATTTAAAATACCCTTTTCTTGGCAAGGACACTGTTTCTACTAGCATAGCCTCCTGGCCATGGTTCCAACTTATGGATGAGGCCATGGAAGGACGCCTCTTCAACAGCGCCCACGTTTTGGCGGTGGAATCTTTGGGTGGTGAGGATCCGAGTGCTCCCTCGCCATTAACCAACGAGAGAGAACAGGGGACCGAGGGTGCTGACATTTTGGAGTTCTTGATCAAAACGGAGATGGAGGACAGTGCAGGGACAGGGAACTTGGAAAACAATGCAACAGTTAACACTGATGCAACTCAGACTGGGGCCTCTACTACTATGGGCTGGCGAAGAATGTCAGAATGCTCATATAAAATGACAGAACAGGAGACGGAGAGAATGATAAAGCTGCGTGCCGTGAATGAGGCCCTCTTCACAGGCAGAAAACATACCGCTAAGCCAGCCTGGAGAGCTATTTTGAATGTGTTGGGTCTTCAGGGAAAAGTGACTACTGACCAGCTAGCCAAAAAGTGGGATAATCTCAAGAGGCGATATAAGGAGTTGAAATGTCCAGCCCGCGGCATGGAGAGCAACCCAAATTCCTGGCCCTGGTTCTACCGCATGAATGATGCTGTCGAGGGGCGTTTCGCCGGCTGCGCCCCCATCCTGACGCCAGTAGTAGAGGAGGGTGATGAGGAGTTTGAGCCCTCTCCACCACCAAGGAAGAGGGCTCGTCGGACACCAGGGAGGGGGGGGATGTCGGAGTTCTTGACAGAGTCAGAAATGGATGAGCTGGTAGAAACAGAGGATAGGAACGGTGCAGCCATGTTCCCAGGGTCCGCCATAGGGGAGTATCACAGGACCACGGAATTCTCATATAAGTTGACTGAGGAGGACACCAAGAGATTGATAGAGCTGCGTGCTTCTAATGAGGCTCTTTTCACAGGAAAGAGAAATACTGCCAAGCCTGCTTGGAGGGCAATAGTGAAAGAGATGGGCCTCGCAGGCAAGTTGTCTGCTGATCAGGTCTCTAAAAAGTGGGACAACCTGAAGACAAAATTCAAGGACTTGAAGTACCCGCCACGTGGCATGGAGAACCAGAGCAGCCCTGCCTCCTGGCCTTGGTTCCAACTTATGAACGATGCCTTCGAGGGCAGACTGGCCGGGAGAGCCCCCAAAATAACGCCTGTATGGGTGAGCGAGGAAGACTACTTGTTTGTATCCTCGCCGATGCCTACAGAGAGAGACCCGTGTCCCATGCCAGAGAGTAGTGGGATTTCTGAGCTGGTAGAGGCAATGGGACCAGGGGACACAGATGTGGATGGAACCGTTACGTTCATCGATGCCAGTGGAGAGGAGTGCCCCACACCTTTGGAATTCTCCTATAAAATGACAGAGCAGGATACGAGGAGGCTGATCAAGTTGCGGGCTGCCAATGAGGTTCTCTTCACTGGGAGGCGAAATGCTGCCAAGACTGCATGGAAGGCCATTTTAAAAGAGTTGGGTCTCCTGGGAAAGGTGTCAACTTACCAGGTGGCCAAGAAGTGGGACAACTTAAAGAGGAGATATAAGGACCTGAAGTACCCTCCTGTGGGCATGGAGAGCATGGCAGACAATGCTGCTTCCTGGCCATGGTTCTACCTCATGAACGAGGCCATGGAGGGCCGCCTTGCTGCCAGCGGACCTGTCCTGACCCCTATAACGGATGGCGACGACCCAAAGCCTTCCCCTTTGCAGCCCATTCGAAGTAGAGGACGCCCGTTGCTGGACAGAGGCGACACCACACTGGAGTACGACCAAGAGCTGTATGCGGACCCCGCCACAGAGGAGTGCCACCGGGCCACAGCGGAGTGTGAGAGGGCCCtaagagaggagaggttgggtaGGGGGCCAGCTGGGGCCACTGCTGCTCACAAGGGAGTGacactagagagagagtgggagatggtggagagggagagggcagcgATAGAGGGGGATAGAGCGGCAGTGGACAGAGAGCGGCAGTggctggagagcgagagagccaaCTTGGCAAGAGAGAGGATGCTGTTGGAACAGGACAGGATggccctggggagagagagagaggcctttgAGAGCCAGAGGGCAGCAGTGGTGATGAACAGCGCTACAGTGGTGCACACTGGACACATCAACCACTGTGGGATGGGGATGTAGACTGATGTTATAGACAGATTGGAAGCCAAGGACTGATCAAGAGCTTTCAAGTTACTTGGAGAACAGACTTTTCAGCATGTTTTCACCTTATTGGCTCGAGATTAATCTCTTTTTACACTATCTCTAAACTTAATGGTTTGTTCAACTAAACCAGTGAGAGATTTCAATCTGTGACACTGCTCACTTGTTTTGAATGATATTTGGAAATTTGTCTGTGTTGTATTTCTTTTGACAGAAAAGGCTAATGATATAAGCCTTAAAGTTTTTGTGATTTGACTCAGTTATTCCAATGACCTCACATCGTCTTTTCAGTCTTGGTTGCAATTACAGTAtattgtaataaaataaaaaaagcacCGTAAAGTGAGAACTGAACGCTTAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47971 lncRNA downstream 37505 39515068 ~ 39515926 (-) True G42695
TU47947 lncRNA downstream 60566 39492631 ~ 39492865 (-) True G42674
TU47946 lncRNA downstream 60910 39492311 ~ 39492521 (-) True G42673
TU47943 lncRNA downstream 64026 39489066 ~ 39489405 (-) True G42670
TU47941 lncRNA downstream 64983 39488032 ~ 39488448 (-) True G42668
TU47969 lncRNA upstream 29033 39592194 ~ 39643822 (-) True G42693
TU48059 lncRNA upstream 155938 39719099 ~ 39733553 (-) False LOC110522570
TU48060 lncRNA upstream 155938 39719099 ~ 39735911 (-) False LOC110522570
TU48061 lncRNA upstream 156104 39719265 ~ 39733637 (-) False LOC110522570
TU48062 lncRNA upstream 156104 39719265 ~ 39735911 (-) False LOC110522570
XM_021600958.2 mRNA downstream 5692 39543494 ~ 39547739 (-) True LOC110522511
XM_021600945.2 mRNA downstream 10120 39534307 ~ 39543311 (-) True si:ch211-59o9.10
XM_021600928.2 mRNA downstream 10121 39530168 ~ 39543310 (-) False si:ch211-59o9.10
XM_021600938.2 mRNA downstream 10124 39530168 ~ 39543307 (-) False si:ch211-59o9.10
NM_001165166.1 mRNA downstream 67422 39481601 ~ 39486009 (-) False c1h15orf40
XM_021600996.2 mRNA upstream 17676 39580837 ~ 39583183 (-) True LOC110522541
XM_021601007.2 mRNA upstream 33384 39596545 ~ 39618668 (-) True LOC110522551
XR_002473340.2 mRNA upstream 154881 39718042 ~ 39733618 (-) False LOC110522570
XR_002473343.2 mRNA upstream 154881 39718042 ~ 39735940 (-) False LOC110522570
trnar-ucg mRNA upstream 178252 39741413 ~ 39741485 (-) True trnar-ucg
TU47067 other downstream 531406 39021805 ~ 39022025 (-) True G41868
TU45924 other downstream 1361695 38187488 ~ 38191736 (-) True G40768
TU45886 other downstream 1427706 38125280 ~ 38125725 (-) True G40732
TU45214 other downstream 1836398 37716540 ~ 37717033 (-) True G40079
TU43930 other downstream 3042602 36508538 ~ 36510829 (-) True G38855
TU52237 other upstream 3475567 43038728 ~ 43129029 (-) True tspan9a
TU55610 other upstream 6157644 45720805 ~ 45721124 (-) True G49774
TU55801 other upstream 6385797 45948958 ~ 45949951 (-) True G49962
TU57229 other upstream 7501613 47064774 ~ 47119033 (-) False G51214
TU57327 other upstream 7725778 47288939 ~ 47289681 (-) True G51285

Expression Profile