si:ch211-59o9.10 (LOC106573327)


Basic Information

Item Value
gene id si:ch211-59o9.10
gene name LOC106573327
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39530168 ~ 39543311 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600938.2
AACAGAATGTTGTGGTTTTGGCGCTGGAAGAGAAAGGAAATTAGTAGCTGGTTAACTAGCTGGCTGGAATGTTTAGTCGTTGTATTTTGTGAGATGGATTAACAAGAGGGCTCTCGAGAACAAGGACCAATTGAATCGTAATCACGAAGTCAGCTTTGACAGTGTATGGACCATACACAAGCTAGTAGCTCCATCTTCGTAGACATGGACAGAACACTGGAGAACTTGGAGCCCAGCAGTCCACTTCAGGACTTTGAGGAACTAGACACCACGGAACCCCTGAATCAGGCATGCCTACTGGATGAGCAAGACCTGCTCTTTGGTGATCTCAGTGAATTTGGCACCCTCAACGAGCCCCCTGTCGTCATCCTTGAGACGCCCAGCCCTCAGTACCTCAGACGGAGGCGGCGGTACAATAGGTTTGAAAACTTTGGATCGGTTTCTCTCAGCCCACCTCCCAGTCGAGAGGAAAAATCGCTCATCATGACCCCCACCTCTCATCAGATGTCAAAACGCAAAAAGCTGTCCATGCCAGCCACCAGCATGAGAGGTGAAGCCAAACCGGGCACCTCGTGGGCAACCAGTGGTTTTGTTGCTGCTTCATCTCTCATAACAGACTCTTCTCTGGTGACCTGGCTGgaacctcctctcccttcctctatgCCATGTTCTTATTCATCATCACCACCCTCATCCTCCCTTGGTGCGCCCCCTGCCTCGCAGGAAGTAACAGCCGGGGAAGGATTTTGCAGAAACACATCGTCTCAGACTCCTGTGGCAGAATCCACAGTGGAACCTGGGCTCCCTAGTTACAACAGAGGCCGGAAGAGGACCTGTAAAAGAGCAGCCTCTACCAAGTCCGCCTCCACATTTGCCCGAGCCCCAACAAACCTCACCACAGACTCTGTGTCATTCCTGCCaggcacagagaaagagagtcatGTTGCTGGCTGGGAGGTTCCTTTCTCTACAGCCGAAGCAATGTCGCCCAAATATGACGAGGTGGTCATCAGTGACAACGATGATGATGTCATTGTAGAGGCTGTGGTTCGCGCAGTGCAGTTGAAGGAAGATGAGGCATTTGCGCGCAGTCTTCAGgaACGGTTTGACCGAGAGGAGCAACTGCAGCAGGAACAAAGGAGACAGCAGGAAGCCATGGCGCCCAACAGACCCCACCACAACTACCCGTATGATCCTCATTTAGGGATGAACTGGATGTCGCCCTGGCCCTCAGCAGTGAACTACGCAGCTTTTTCGCCTCTCGTCGCGGGATTAGAGGAAGAGTTGATGGGAAGGCGCAGAGGAAGAGGCCGATCTCGCGCTCCTCGTCGCAGAAACCCCCGTCATGTGGTCTCTTCCCTCTTTGATGACAGTCAGGGAGACAACTATGAGGCTCTACTGGCCTTTGAGGAGGGCCAGGGTGCTGTTGTGGCCAAGAAAACCCTGAgtgaaagagagattgagaggctGCCTACGAAAACCTACGACCCAGCACATAGTGCAGGAAAGACACAGTGTCAGATCTGTTTCTCAGACTATACAGAGGGGGAACTGCTGAGGATGCTCCCATGCCTCCATAACTACCATATGCAATGCATCGACCGCTGGTTAAAGGAAAACTCCACGTGCCCTATCTGCCGAATTGACATATCCGAGTGCAGTGGTAACTGAGCCCGAGTGACCACGGAACATGACCTGGACCTCACCGGACGTACAACGCGACAACCTCTCATGTGTTAAGGTGTTTACAAGACTTTAAGACTTAAGTTTAATTTTATACCCTGAAGATCGACATCCTACAATAACGTTCAATCACCAGATAAGagttcaaatgtttttattttttattaaaacctCAATTTTCCACCAACATGAAGTTATTCTACTTGAATTATGCAACTCAGGATCGCTGCTATGTTTTAGTATTCTCATTCCACATTGAATGTTTTTTTCAGAtccccaaaatatttttccaGCATAGTTTCAAATAAATATTTGAGGTGGTTTTATAGGGGTTTTGGCAAAGTTGATCTGTGTAAAATATTGTATAAAAAGGAAAATACAAGACTACAAAAGCCAGTATACTGTTTCAAGTATGCTTGGAACAAGGAAAGCATATTAAACCGCATATACTGTTGTACACTGAATGCACTGTCATGGCTTCTATTGAACTTTAATATGGCCTTCAATCGTTCTGGTGTTTGATGGACTCGTCAGGTGGCTTCTTAGACCCTTCTTAATAAAACATCTTCATAGAGGGCACCATAACTTTGTTATTGTCACATTTCAAGGCAGTGGTGTCAAGTGTGGCCAGTCATTCCTCAGGTTCATAGTACCGCTTTTTCATGGCTCTGTACTTCCTCAGGTAGTAAAGTGCTTCCAACTCCTTGATGACAAACTACCCTCGGGCTATCATTTGTTTGATCATCTCTGGGTCTTTCACATCTTTGTTATTCGAAAATGCAGACTTCAGTCTATCCCTAAAGTAGCCAGCACCTTTGGGATACTCCCATCCAAAGTAGAGGAGCTGTTGGAGGAGTAGAACAGTGACAATTACCCATTGAAGGGGGTagaaatgtatatttaaaaacaaaaaaatgtgcgttagggcaggtagcctagcggtgagAGGTGAGCcagcaaccggaaggttgccaGTTGAAATCCGAGGTCCGACTGAAGATCTGTCAGGAAGTGAGCTAGCAACCGAAAATGCCTGAcaatgtacccttgagcaaggcacatgCCCCCACCTCCCACAACACAGCTGGCGCCCAGTCTGTATGTGAGCTTGTCTTTCCGAGGGGTTCAGTTAAAAGGTGATGTTAAATTATGATTGGACCTTGTGTGCAATTTACCAATAAAGTTATCTTAATCTTAAA
>XM_021600928.2
TAAAACAGAATGTTGTGGTTTTGGCGCTGGAAGAGAAAGGAAATTAGTAGCTGGTTAACTAGCTGGCTGGAATGTTTAGTCGTTGTATTTTGTGAGATGGATTAACAAGAGGGCTCTCGAGAACAAGGACCAATTGAATCGTAATCACGAAGTCAGGTGTGATCTATGTGAAGCTTTGACAGTGTATGGACCATACACAAGCTAGTAGCTCCATCTTCGTAGACATGGACAGAACACTGGAGAACTTGGAGCCCAGCAGTCCACTTCAGGACTTTGAGGAACTAGACACCACGGAACCCCTGAATCAGGCATGCCTACTGGATGAGCAAGACCTGCTCTTTGGTGATCTCAGTGAATTTGGCACCCTCAACGAGCCCCCTGTCGTCATCCTTGAGACGCCCAGCCCTCAGTACCTCAGACGGAGGCGGCGGTACAATAGGTTTGAAAACTTTGGATCGGTTTCTCTCAGCCCACCTCCCAGTCGAGAGGAAAAATCGCTCATCATGACCCCCACCTCTCATCAGATGTCAAAACGCAAAAAGCTGTCCATGCCAGCCACCAGCATGAGAGGTGAAGCCAAACCGGGCACCTCGTGGGCAACCAGTGGTTTTGTTGCTGCTTCATCTCTCATAACAGACTCTTCTCTGGTGACCTGGCTGgaacctcctctcccttcctctatgCCATGTTCTTATTCATCATCACCACCCTCATCCTCCCTTGGTGCGCCCCCTGCCTCGCAGGAAGTAACAGCCGGGGAAGGATTTTGCAGAAACACATCGTCTCAGACTCCTGTGGCAGAATCCACAGTGGAACCTGGGCTCCCTAGTTACAACAGAGGCCGGAAGAGGACCTGTAAAAGAGCAGCCTCTACCAAGTCCGCCTCCACATTTGCCCGAGCCCCAACAAACCTCACCACAGACTCTGTGTCATTCCTGCCaggcacagagaaagagagtcatGTTGCTGGCTGGGAGGTTCCTTTCTCTACAGCCGAAGCAATGTCGCCCAAATATGACGAGGTGGTCATCAGTGACAACGATGATGATGTCATTGTAGAGGCTGTGGTTCGCGCAGTGCAGTTGAAGGAAGATGAGGCATTTGCGCGCAGTCTTCAGgaACGGTTTGACCGAGAGGAGCAACTGCAGCAGGAACAAAGGAGACAGCAGGAAGCCATGGCGCCCAACAGACCCCACCACAACTACCCGTATGATCCTCATTTAGGGATGAACTGGATGTCGCCCTGGCCCTCAGCAGTGAACTACGCAGCTTTTTCGCCTCTCGTCGCGGGATTAGAGGAAGAGTTGATGGGAAGGCGCAGAGGAAGAGGCCGATCTCGCGCTCCTCGTCGCAGAAACCCCCGTCATGTGGTCTCTTCCCTCTTTGATGACAGTCAGGGAGACAACTATGAGGCTCTACTGGCCTTTGAGGAGGGCCAGGGTGCTGTTGTGGCCAAGAAAACCCTGAgtgaaagagagattgagaggctGCCTACGAAAACCTACGACCCAGCACATAGTGCAGGAAAGACACAGTGTCAGATCTGTTTCTCAGACTATACAGAGGGGGAACTGCTGAGGATGCTCCCATGCCTCCATAACTACCATATGCAATGCATCGACCGCTGGTTAAAGGAAAACTCCACGTGCCCTATCTGCCGAATTGACATATCCGAGTGCAGTGGTAACTGAGCCCGAGTGACCACGGAACATGACCTGGACCTCACCGGACGTACAACGCGACAACCTCTCATGTGTTAAGGTGTTTACAAGACTTTAAGACTTAAGTTTAATTTTATACCCTGAAGATCGACATCCTACAATAACGTTCAATCACCAGATAAGagttcaaatgtttttattttttattaaaacctCAATTTTCCACCAACATGAAGTTATTCTACTTGAATTATGCAACTCAGGATCGCTGCTATGTTTTAGTATTCTCATTCCACATTGAATGTTTTTTTCAGAtccccaaaatatttttccaGCATAGTTTCAAATAAATATTTGAGGTGGTTTTATAGGGGTTTTGGCAAAGTTGATCTGTGTAAAATATTGTATAAAAAGGAAAATACAAGACTACAAAAGCCAGTATACTGTTTCAAGTATGCTTGGAACAAGGAAAGCATATTAAACCGCATATACTGTTGTACACTGAATGCACTGTCATGGCTTCTATTGAACTTTAATATGGCCTTCAATCGTTCTGGTGTTTGATGGACTCGTCAGGTGGCTTCTTAGACCCTTCTTAATAAAACATCTTCATAGAGGGCACCATAACTTTGTTATTGTCACATTTCAAGGCAGTGGTGTCAAGTGTGGCCAGTCATTCCTCAGGTTCATAGTACCGCTTTTTCATGGCTCTGTACTTCCTCAGGTAGTAAAGTGCTTCCAACTCCTTGATGACAAACTACCCTCGGGCTATCATTTGTTTGATCATCTCTGGGTCTTTCACATCTTTGTTATTCGAAAATGCAGACTTCAGTCTATCCCTAAAGTAGCCAGCACCTTTGGGATACTCCCATCCAAAGTAGAGGAGCTGTTGGAGGAGTAGAACAGTGACAATTACCCATTGAAGGGGGTagaaatgtatatttaaaaacaaaaaaatgtgcgttagggcaggtagcctagcggtgagAGGTGAGCcagcaaccggaaggttgccaGTTGAAATCCGAGGTCCGACTGAAGATCTGTCAGGAAGTGAGCTAGCAACCGAAAATGCCTGAcaatgtacccttgagcaaggcacatgCCCCCACCTCCCACAACACAGCTGGCGCCCAGTCTGTATGTGAGCTTGTCTTTCCGAGGGGTTCAGTTAAAAGGTGATGTTAAATTATGATTGGACCTTGTGTGCAATTTACCAATAAAGTTATCTTAATCTTAAA
>XM_021600945.2
ATAAAACAGAATGTTGTGGTTTTGGCGCTGGAAGAGAAAGGAAATTAGTAGCTGGTTAACTAGCTGGCTGGAATGTTTAGTCGTTGTATTTTGTGAGATGGATTAACAAGAGGGCTCTCGAGAACAAGGACCAATTGAATCGTAATCACGAAGTCAGGTGTGATCTATGTGAAGCTTTGACAGTGTATGGACCATACACAAGCTAGTAGCTCCATCTTCGTAGACATGGACAGAACACTGGAGAACTTGGAGCCCAGCAGTCCACTTCAGGACTTTGAGGAACTAGACACCACGGAACCCCTGAATCAGGCATGCCTACTGGATGAGCAAGACCTGCTCTTTGGTGATCTCAGTGAATTTGGCACCCTCAACGAGCCCCCTGTCGTCATCCTTGAGACGCCCAGCCCTCAGTACCTCAGACGGAGGCGGCGGTACAATAGGTTTGAAAACTTTGGATCGGTTTCTCTCAGCCCACCTCCCAGTCGAGAGGAAAAATCGCTCATCATGACCCCCACCTCTCATCAGATGTCAAAACGCAAAAAGCTGTCCATGCCAGCCACCAGCATGAGAGGTGAAGCCAAACCGGGCACCTCGTGGGCAACCAGTGGTTTTGTTGCTGCTTCATCTCTCATAACAGACTCTTCTCTGGTGACCTGGCTGgaacctcctctcccttcctctatgCCATGTTCTTATTCATCATCACCACCCTCATCCTCCCTTGGTGCGCCCCCTGCCTCGCAGGAAGTAACAGCCGGGGAAGGATTTTGCAGAAACACATCGTCTCAGACTCCTGTGGCAGAATCCACAGTGGAACCTGGGCTCCCTAGTTACAACAGAGGCCGGAAGAGGACCTGTAAAAGAGCAGCCTCTACCAAGTCCGCCTCCACATTTGCCCGAGCCCCAACAAACCTCACCACAGACTCTGTGTCATTCCTGCCaggcacagagaaagagagtcatGTTGCTGGCTGGGAGGTTCCTTTCTCTACAGCCGAAGCAATGTCGCCCAAATATGACGAGGTGGTCATCAGTGACAACGATGATGATGTCATTGTAGAGGCTGTGGTTCGCGCAGTGCAGTTGAAGGAAGATGAGGCATTTGCGCGCAGTCTTCAGgaACGGTTTGACCGAGAGGAGCAACTGCAGCAGGAACAAAGGAGACAGCAGGAAGCCATGGCGCCCAACAGACCCCACCACAACTACCCGTATGATCCTCATTTAGGGATGAACTGGATGTCGCCCTGGCCCTCAGCAGTGAACTACGCAGCTTTTTCGCCTCTCGTCGCGGGATTAGAGGAAGtGTGTGTTGAATCATTCAGAGTTGATGGGAAGGCGCAGAGGAAGAGGCCGATCTCGCGCTCCTCGTCGCAGAAACCCCCGTCATGTGGTCTCTTCCCTCTTTGATGACAGTCAGGGAGACAACTATGAGGCTCTACTGGCCTTTGAGGAGGGCCAGGGTGCTGTTGTGGCCAAGAAAACCCTGAgtgaaagagagattgagaggctGCCTAC

Function

NR:

description
uncharacterized protein LOC110522496 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600938.2 False 2882 mRNA 0.47 11 39530168 39543307
XM_021600928.2 False 2902 mRNA 0.47 11 39530168 39543310
XM_021600945.2 True 1515 mRNA 0.52 9 39534307 39543311

Neighbor

gene id symbol gene type direction distance location
c1h15orf40 cssa16h15orf40 coding downstream 44159 39481601 ~ 39486010 (-)
kip1 kip1 coding downstream 170508 39357133 ~ 39359660 (-)
man2a2 man2a2 coding downstream 193843 39315052 ~ 39336325 (-)
LOC118966691 LOC106573346 coding downstream 415071 39100825 ~ 39115097 (-)
LOC110522389 LOC106573347 coding downstream 445850 39081003 ~ 39084318 (-)
LOC110522511 LOC106573329 coding upstream 183 39543494 ~ 39547739 (-)
LOC110522519 LOC106573326 coding upstream 10120 39553431 ~ 39563229 (-)
LOC110522541 LOC106573325 coding upstream 37526 39580837 ~ 39583183 (-)
LOC110522551 LOC106573324 coding upstream 53234 39596545 ~ 39618668 (-)
LOC110522570 NA coding upstream 174731 39718042 ~ 39735940 (-)
G42695 NA non-coding downstream 14242 39515068 ~ 39515926 (-)
G42674 NA non-coding downstream 37303 39492631 ~ 39492865 (-)
G42673 NA non-coding downstream 37647 39492311 ~ 39492521 (-)
G42670 NA non-coding downstream 40763 39489066 ~ 39489405 (-)
G42668 NA non-coding downstream 41720 39488032 ~ 39488448 (-)
G42693 NA non-coding upstream 48883 39592194 ~ 39643822 (-)
G42835 NA non-coding upstream 245659 39788970 ~ 39794020 (-)
G42863 LOC106573315 non-coding upstream 288706 39832017 ~ 39832245 (-)
G42866 NA non-coding upstream 292418 39835729 ~ 39835958 (-)
G41868 NA other downstream 508143 39021805 ~ 39022025 (-)
G40768 LOC106573348 other downstream 1338432 38187488 ~ 38191736 (-)
G40732 NA other downstream 1404443 38125280 ~ 38125725 (-)
G40079 NA other downstream 1813135 37716540 ~ 37717033 (-)
G38855 NA other downstream 3019339 36508538 ~ 36510829 (-)
tspan9a LOC106573177 other upstream 3495417 42852829 ~ 43129052 (-)
G49774 NA other upstream 6177494 45720805 ~ 45721124 (-)
G49962 NA other upstream 6405647 45948958 ~ 45949951 (-)
G51214 NA other upstream 7521463 47064774 ~ 47236625 (-)
G51285 LOC106561952 other upstream 7745628 47288939 ~ 47289681 (-)

Expression


Co-expression Network