RNA id: XM_021600928.2


Basic Information

Item Value
RNA id XM_021600928.2
length 2902
RNA type mRNA
GC content 0.47
exon number 11
gene id si:ch211-59o9.10
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39530168 ~ 39543311 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAACAGAATGTTGTGGTTTTGGCGCTGGAAGAGAAAGGAAATTAGTAGCTGGTTAACTAGCTGGCTGGAATGTTTAGTCGTTGTATTTTGTGAGATGGATTAACAAGAGGGCTCTCGAGAACAAGGACCAATTGAATCGTAATCACGAAGTCAGGTGTGATCTATGTGAAGCTTTGACAGTGTATGGACCATACACAAGCTAGTAGCTCCATCTTCGTAGACATGGACAGAACACTGGAGAACTTGGAGCCCAGCAGTCCACTTCAGGACTTTGAGGAACTAGACACCACGGAACCCCTGAATCAGGCATGCCTACTGGATGAGCAAGACCTGCTCTTTGGTGATCTCAGTGAATTTGGCACCCTCAACGAGCCCCCTGTCGTCATCCTTGAGACGCCCAGCCCTCAGTACCTCAGACGGAGGCGGCGGTACAATAGGTTTGAAAACTTTGGATCGGTTTCTCTCAGCCCACCTCCCAGTCGAGAGGAAAAATCGCTCATCATGACCCCCACCTCTCATCAGATGTCAAAACGCAAAAAGCTGTCCATGCCAGCCACCAGCATGAGAGGTGAAGCCAAACCGGGCACCTCGTGGGCAACCAGTGGTTTTGTTGCTGCTTCATCTCTCATAACAGACTCTTCTCTGGTGACCTGGCTGgaacctcctctcccttcctctatgCCATGTTCTTATTCATCATCACCACCCTCATCCTCCCTTGGTGCGCCCCCTGCCTCGCAGGAAGTAACAGCCGGGGAAGGATTTTGCAGAAACACATCGTCTCAGACTCCTGTGGCAGAATCCACAGTGGAACCTGGGCTCCCTAGTTACAACAGAGGCCGGAAGAGGACCTGTAAAAGAGCAGCCTCTACCAAGTCCGCCTCCACATTTGCCCGAGCCCCAACAAACCTCACCACAGACTCTGTGTCATTCCTGCCaggcacagagaaagagagtcatGTTGCTGGCTGGGAGGTTCCTTTCTCTACAGCCGAAGCAATGTCGCCCAAATATGACGAGGTGGTCATCAGTGACAACGATGATGATGTCATTGTAGAGGCTGTGGTTCGCGCAGTGCAGTTGAAGGAAGATGAGGCATTTGCGCGCAGTCTTCAGgaACGGTTTGACCGAGAGGAGCAACTGCAGCAGGAACAAAGGAGACAGCAGGAAGCCATGGCGCCCAACAGACCCCACCACAACTACCCGTATGATCCTCATTTAGGGATGAACTGGATGTCGCCCTGGCCCTCAGCAGTGAACTACGCAGCTTTTTCGCCTCTCGTCGCGGGATTAGAGGAAGAGTTGATGGGAAGGCGCAGAGGAAGAGGCCGATCTCGCGCTCCTCGTCGCAGAAACCCCCGTCATGTGGTCTCTTCCCTCTTTGATGACAGTCAGGGAGACAACTATGAGGCTCTACTGGCCTTTGAGGAGGGCCAGGGTGCTGTTGTGGCCAAGAAAACCCTGAgtgaaagagagattgagaggctGCCTACGAAAACCTACGACCCAGCACATAGTGCAGGAAAGACACAGTGTCAGATCTGTTTCTCAGACTATACAGAGGGGGAACTGCTGAGGATGCTCCCATGCCTCCATAACTACCATATGCAATGCATCGACCGCTGGTTAAAGGAAAACTCCACGTGCCCTATCTGCCGAATTGACATATCCGAGTGCAGTGGTAACTGAGCCCGAGTGACCACGGAACATGACCTGGACCTCACCGGACGTACAACGCGACAACCTCTCATGTGTTAAGGTGTTTACAAGACTTTAAGACTTAAGTTTAATTTTATACCCTGAAGATCGACATCCTACAATAACGTTCAATCACCAGATAAGagttcaaatgtttttattttttattaaaacctCAATTTTCCACCAACATGAAGTTATTCTACTTGAATTATGCAACTCAGGATCGCTGCTATGTTTTAGTATTCTCATTCCACATTGAATGTTTTTTTCAGAtccccaaaatatttttccaGCATAGTTTCAAATAAATATTTGAGGTGGTTTTATAGGGGTTTTGGCAAAGTTGATCTGTGTAAAATATTGTATAAAAAGGAAAATACAAGACTACAAAAGCCAGTATACTGTTTCAAGTATGCTTGGAACAAGGAAAGCATATTAAACCGCATATACTGTTGTACACTGAATGCACTGTCATGGCTTCTATTGAACTTTAATATGGCCTTCAATCGTTCTGGTGTTTGATGGACTCGTCAGGTGGCTTCTTAGACCCTTCTTAATAAAACATCTTCATAGAGGGCACCATAACTTTGTTATTGTCACATTTCAAGGCAGTGGTGTCAAGTGTGGCCAGTCATTCCTCAGGTTCATAGTACCGCTTTTTCATGGCTCTGTACTTCCTCAGGTAGTAAAGTGCTTCCAACTCCTTGATGACAAACTACCCTCGGGCTATCATTTGTTTGATCATCTCTGGGTCTTTCACATCTTTGTTATTCGAAAATGCAGACTTCAGTCTATCCCTAAAGTAGCCAGCACCTTTGGGATACTCCCATCCAAAGTAGAGGAGCTGTTGGAGGAGTAGAACAGTGACAATTACCCATTGAAGGGGGTagaaatgtatatttaaaaacaaaaaaatgtgcgttagggcaggtagcctagcggtgagAGGTGAGCcagcaaccggaaggttgccaGTTGAAATCCGAGGTCCGACTGAAGATCTGTCAGGAAGTGAGCTAGCAACCGAAAATGCCTGAcaatgtacccttgagcaaggcacatgCCCCCACCTCCCACAACACAGCTGGCGCCCAGTCTGTATGTGAGCTTGTCTTTCCGAGGGGTTCAGTTAAAAGGTGATGTTAAATTATGATTGGACCTTGTGTGCAATTTACCAATAAAGTTATCTTAATCTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47971 lncRNA downstream 14242 39515068 ~ 39515926 (-) True G42695
TU47947 lncRNA downstream 37303 39492631 ~ 39492865 (-) True G42674
TU47946 lncRNA downstream 37647 39492311 ~ 39492521 (-) True G42673
TU47943 lncRNA downstream 40763 39489066 ~ 39489405 (-) True G42670
TU47941 lncRNA downstream 41720 39488032 ~ 39488448 (-) True G42668
TU47969 lncRNA upstream 48884 39592194 ~ 39643822 (-) True G42693
TU48059 lncRNA upstream 175789 39719099 ~ 39733553 (-) False LOC110522570
TU48060 lncRNA upstream 175789 39719099 ~ 39735911 (-) False LOC110522570
TU48061 lncRNA upstream 175955 39719265 ~ 39733637 (-) False LOC110522570
TU48062 lncRNA upstream 175955 39719265 ~ 39735911 (-) False LOC110522570
NM_001165166.1 mRNA downstream 44159 39481601 ~ 39486009 (-) False c1h15orf40
NM_001160543.1 mRNA downstream 170508 39357133 ~ 39359660 (-) True kip1
XM_036977122.1 mRNA downstream 193843 39315052 ~ 39336325 (-) True man2a2
XM_036977115.1 mRNA downstream 193844 39315052 ~ 39336324 (-) False man2a2
XM_036977133.1 mRNA downstream 193847 39315052 ~ 39336321 (-) False man2a2
XM_021600958.2 mRNA upstream 184 39543494 ~ 39547739 (-) True LOC110522511
XM_021600976.2 mRNA upstream 10121 39553431 ~ 39563161 (-) False LOC110522519
XM_021600984.2 mRNA upstream 10121 39553431 ~ 39563190 (-) False LOC110522519
XM_021600969.2 mRNA upstream 10121 39553431 ~ 39563229 (-) False LOC110522519
XM_036977291.1 mRNA upstream 10121 39553431 ~ 39563229 (-) True LOC110522519
TU47067 other downstream 508143 39021805 ~ 39022025 (-) True G41868
TU45924 other downstream 1338432 38187488 ~ 38191736 (-) True G40768
TU45886 other downstream 1404443 38125280 ~ 38125725 (-) True G40732
TU45214 other downstream 1813135 37716540 ~ 37717033 (-) True G40079
TU43930 other downstream 3019339 36508538 ~ 36510829 (-) True G38855
TU52237 other upstream 3495418 43038728 ~ 43129029 (-) True tspan9a
TU55610 other upstream 6177495 45720805 ~ 45721124 (-) True G49774
TU55801 other upstream 6405648 45948958 ~ 45949951 (-) True G49962
TU57229 other upstream 7521464 47064774 ~ 47119033 (-) False G51214
TU57327 other upstream 7745629 47288939 ~ 47289681 (-) True G51285

Expression Profile