RNA id: NM_001160543.1


Basic Information

Item Value
RNA id NM_001160543.1
length 931
RNA type mRNA
GC content 0.39
exon number 7
gene id kip1
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39357133 ~ 39359660 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTATATTTCGTCGATTCGGAAAAGGGAAGTGGCTAGCTGCTTCGGAAAGTTATCGAATCAGAAAGTGTTCTTTCTCTGAAGTTGGATAGCTAATAACaaacagaagaaaaaaacaaaaacatgggAACAACAGCAAGTCAATTAAGGAAGGATCTGCTCTCAGAATATCAGGAGCTGACGTTTCTTACAAAGCAAGAAATTATTCTGGCACACAAGAGATTCAGTGAACTCCTCTCCAAAGAGGACAGAAACGTCCCCACCCCGCGAGTGCCCATGGAGAAAGTCCTTTCACTGCCAGAACTCAAGTCCAACCCTTTCAGAAAAAGGATCTGTCACGTATTCTCAACATCTGATATGAAAGATGGAAGTCTCACCTTTGAGGACTTCCTTGATCTCTTGAGTGCCTTCAGTGATTCAGCTACACTGGAAATCAAGTCCCACTACGCATTCCGCATTTTTGACTTTGATGATGATGGCACTCTGGATGGTGGGGACCTGGAGAAGCTGGTGAACTGTCTGACTGGTGAGACGGATGACACAAGGCTTACCACTGAAGAGATGAGGCAGCTCATCAGCAATATTCTTGAAGAGTCTGATATAGACAAAGATGGAACTGTGAATCTGTCAGAGTTCCAACACGTCATCTCAAGGTCACCAGATTTTGTCAGTTCTTTTAAGATTGTTCTGTGAAGTCGACAAATAAGATGCCAGGATATGGATGCCTTGGATTCTCTGTCCTATTAATACTCAGAAgacctttttttttctccattgtaataatatatattttttgattttGCCTCAAATTCTTTGTAGATTAATATTTTCTATTATGTTTGATAATGTATTTTTACATAATGTATATGCGATAAGAGCCCTCTAACTGTATTTTTTCAATCTAAATATCTAGAATAAAAGTAATCAAGTCTT

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K17259 CIB1; calcium and integrin-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47670 lncRNA downstream 243501 39113322 ~ 39113632 (-) True G42429
TU47661 lncRNA downstream 253588 39103062 ~ 39103545 (-) True G42420
TU47659 lncRNA downstream 256760 39100132 ~ 39100373 (-) True G42418
TU47657 lncRNA downstream 259791 39097138 ~ 39097342 (-) True G42416
TU47650 lncRNA downstream 264390 39092532 ~ 39092743 (-) True G42409
TU47864 lncRNA upstream 29711 39389371 ~ 39390941 (-) True G42605
TU47933 lncRNA upstream 115126 39474786 ~ 39475050 (-) True G42661
TU47935 lncRNA upstream 119350 39479010 ~ 39479259 (-) True G42663
TU47939 lncRNA upstream 121984 39481644 ~ 39486010 (-) True c1h15orf40
TU47941 lncRNA upstream 128372 39488032 ~ 39488448 (-) True G42668
XM_036977122.1 mRNA downstream 20808 39315052 ~ 39336325 (-) True man2a2
XM_036977115.1 mRNA downstream 20809 39315052 ~ 39336324 (-) False man2a2
XM_036977133.1 mRNA downstream 20812 39315052 ~ 39336321 (-) False man2a2
LOC118966691 mRNA downstream 242036 39100825 ~ 39115097 (-) True LOC118966691
XM_021600757.2 mRNA downstream 272815 39081003 ~ 39084318 (-) True LOC110522389
NM_001165166.1 mRNA upstream 121941 39481601 ~ 39486009 (-) False c1h15orf40
XM_021600938.2 mRNA upstream 170508 39530168 ~ 39543307 (-) False si:ch211-59o9.10
XM_021600928.2 mRNA upstream 170508 39530168 ~ 39543310 (-) False si:ch211-59o9.10
XM_021600945.2 mRNA upstream 174647 39534307 ~ 39543311 (-) True si:ch211-59o9.10
XM_021600958.2 mRNA upstream 183834 39543494 ~ 39547739 (-) True LOC110522511
TU47067 other downstream 335108 39021805 ~ 39022025 (-) True G41868
TU45924 other downstream 1165397 38187488 ~ 38191736 (-) True G40768
TU45886 other downstream 1231408 38125280 ~ 38125725 (-) True G40732
TU45214 other downstream 1640100 37716540 ~ 37717033 (-) True G40079
TU43930 other downstream 2846304 36508538 ~ 36510829 (-) True G38855
TU52237 other upstream 3679068 43038728 ~ 43129029 (-) True tspan9a
TU55610 other upstream 6361145 45720805 ~ 45721124 (-) True G49774
TU55801 other upstream 6589298 45948958 ~ 45949951 (-) True G49962
TU57229 other upstream 7705114 47064774 ~ 47119033 (-) False G51214
TU57327 other upstream 7929279 47288939 ~ 47289681 (-) True G51285

Expression Profile