RNA id: TU47864


Basic Information

Item Value
RNA id TU47864
length 1152
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G42605
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39389371 ~ 39390941 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgatatgtgacacatattaatgccaaaataacatgcaaaacaggcaagccaaaaaaattaaaatatttatatattttttttttgttgctaaaaaTCTGGGGCTAATTGTCAAACTAATATTAATGTACAACAATATAGAAGATACATAACTAAAAGTTATGCAATATGGGTATATGTCCACTGCACACTTCTTAGGTGTGTAATTGACATGAGATTGCAGTACACAAACAAGAGTGTGCAATATATAAGGCTAGTCCGTGAACCTTCTGAAGTCTGTTTGAGGTCATTAGGTCACAtaaccaaggagctattgaaattctaaagtttgaaaaatgtatgtaaaaacgtgtgagatgaaaatggacaaactaaagggtgtgcaatgtgtaggcccactgagtaGACATTATGAACCTAATTTGAGGTTTGTGACATGACCAAGGCGCTATTGAATTACAAGATGttttataaataatttaaaatagtgCGAGATGTAAATTGACAAAAGAATAGTGTGTGCAATGTGTGTCTCTGCCATCAGGTTAGCTAGAATCCGTTTTGAACGTTTTTAGGAGTAATGgttaaagagctattgaaataaaaaaaatgtgatttgtcaatacgttgacggtccctaactgctgttggtggacGTTAGGAAAACTACAATATCCGTCGAATATCCAACCTGAATAAAGTCTTTACCTCGGTCGCAGATTTTCCAATTTCAAAACGATTTGGAGCACAACACGAATTAGAAAAATAAATGCAGTACTTTTCAATGTGTGAGATGTAAGAGGTGTGCCGTGGGAGCGTGAGATGAGGGTCAAATCCATGTCTCACAGTCAATGCGTGAGAGTTGGCAGCTCCGGTTTGATGGGATTCAGGAGCTGAGGGCCGCCTGACTGCTCAGCTGAGCggacacacagaaacagagatgAACACTGGGAAACACAGGAAAGAGAGTCGTGTATACTGTATCTCCTACTAATGTTGATTATGATTAAGGAGAAACTTACATGCATCTCAAGTTAGGGTTTTGTTATCAGTGGAACATGTTCAGCAATTTACAGATGTATTTTTATACCATGTGTaccttcagtgattttttttgtacagatgtgaaaagattaaatgtttGTCTTTTTAgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47670 lncRNA downstream 275739 39113322 ~ 39113632 (-) True G42429
TU47661 lncRNA downstream 285826 39103062 ~ 39103545 (-) True G42420
TU47659 lncRNA downstream 288998 39100132 ~ 39100373 (-) True G42418
TU47657 lncRNA downstream 292029 39097138 ~ 39097342 (-) True G42416
TU47650 lncRNA downstream 296628 39092532 ~ 39092743 (-) True G42409
TU47933 lncRNA upstream 83845 39474786 ~ 39475050 (-) True G42661
TU47935 lncRNA upstream 88069 39479010 ~ 39479259 (-) True G42663
TU47939 lncRNA upstream 90703 39481644 ~ 39486010 (-) True c1h15orf40
TU47941 lncRNA upstream 97091 39488032 ~ 39488448 (-) True G42668
TU47943 lncRNA upstream 98125 39489066 ~ 39489405 (-) True G42670
NM_001160543.1 mRNA downstream 29711 39357133 ~ 39359660 (-) True kip1
XM_036977122.1 mRNA downstream 53046 39315052 ~ 39336325 (-) True man2a2
XM_036977115.1 mRNA downstream 53047 39315052 ~ 39336324 (-) False man2a2
XM_036977133.1 mRNA downstream 53050 39315052 ~ 39336321 (-) False man2a2
LOC118966691 mRNA downstream 274274 39100825 ~ 39115097 (-) True LOC118966691
NM_001165166.1 mRNA upstream 90660 39481601 ~ 39486009 (-) False c1h15orf40
XM_021600938.2 mRNA upstream 139227 39530168 ~ 39543307 (-) False si:ch211-59o9.10
XM_021600928.2 mRNA upstream 139227 39530168 ~ 39543310 (-) False si:ch211-59o9.10
XM_021600945.2 mRNA upstream 143366 39534307 ~ 39543311 (-) True si:ch211-59o9.10
XM_021600958.2 mRNA upstream 152553 39543494 ~ 39547739 (-) True LOC110522511
TU47067 other downstream 367346 39021805 ~ 39022025 (-) True G41868
TU45924 other downstream 1197635 38187488 ~ 38191736 (-) True G40768
TU45886 other downstream 1263646 38125280 ~ 38125725 (-) True G40732
TU45214 other downstream 1672338 37716540 ~ 37717033 (-) True G40079
TU43930 other downstream 2878542 36508538 ~ 36510829 (-) True G38855
TU52237 other upstream 3647787 43038728 ~ 43129029 (-) True tspan9a
TU55610 other upstream 6329864 45720805 ~ 45721124 (-) True G49774
TU55801 other upstream 6558017 45948958 ~ 45949951 (-) True G49962
TU57229 other upstream 7673833 47064774 ~ 47119033 (-) False G51214
TU57327 other upstream 7897998 47288939 ~ 47289681 (-) True G51285

Expression Profile