RNA id: TU47939


Basic Information

Item Value
RNA id TU47939
length 1045
lncRNA type sense_over
GC content 0.44
exon number 5
gene id c1h15orf40
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 39481601 ~ 39486010 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACAGCACTGTGTGCAGTAGCTTTGTTAACATTTTCTGACCGCTGTGCCTTGACGTTACtggagataaaaaaaataaataaaaaagcacTGTAGTTTGAATAGTCACTGAGATTCCTTGATGTTCACCCAAACCCGTTCTCTTCGTTTAACCCGGACAACATTATTTCAGGTGTTACATTTGAGCAACTTTATCCAAAAGCATCTGTCTCTCTACTTCTGTCGGAGACTGTCCTCATCATCACACCAGCTTGAGGGACCTTTGTCAGCAAGAAGAAATTACTCTGGAAACCATAACATGCCCAAAAAGGACAAAACGCATGtattttcagattccacaatgattatTTAGTTGTGGACACGACACCACCGCATTCCGTCTTGCTCTTGGCCCTCCTCATCTTTaATAAAACTGTAGGCCTACAGAAGCCGTCGGAGAAACCTTCACCTTCTGGGCCAGTAGCTCGAAACAAGAACGGAGTGGTGACAATTTCAGTGCACGCGAAGCCTGGATCTAAACAGAACGCAATTACAGATGTGTCTATAGAGGCAGTAGGTGTCGCTATTGCCGCACCGCCAACAGATGGGGAGGCCAATGCGGAGCTTGTGCGGTATCTCTCCAAGGTGCTGGAGTTGAAGAAAAGTGAAGTCGTTTTGGACAAGGGCTCCAGATCCAGAGAGaagattattaaagtgactgggtCACTAACCCCGGAGCAGGTGTTGGACAGGTTAAAGCAAGAGGCTTCTGGATGACATCATGGAGGACATTGTGTTCCTGGTCCTATGCACCTTTACAGTATTGGTTGATTTTAAGATATCTATGGAAAACAGTTCAGATAAAATAAGATTGTAGCTATGTGTTTGCATCAGCTGATACATACACCAATAAATACACAATATGTGACATGCCCTATATGGAAGCATTCTATAATTATTTGAAATGTGTAGGGGTCTGAAATGATTCCCAAAATGTTGAAAGAACCCTTGTTTACGGAGGccatcctctctcttttctcagaaATAATTAGCTTATCATCTTTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47935 lncRNA downstream 2385 39479010 ~ 39479259 (-) True G42663
TU47933 lncRNA downstream 6594 39474786 ~ 39475050 (-) True G42661
TU47864 lncRNA downstream 90703 39389371 ~ 39390941 (-) True G42605
TU47670 lncRNA downstream 368012 39113322 ~ 39113632 (-) True G42429
TU47661 lncRNA downstream 378099 39103062 ~ 39103545 (-) True G42420
TU47941 lncRNA upstream 2022 39488032 ~ 39488448 (-) True G42668
TU47943 lncRNA upstream 3056 39489066 ~ 39489405 (-) True G42670
TU47946 lncRNA upstream 6301 39492311 ~ 39492521 (-) True G42673
TU47947 lncRNA upstream 6621 39492631 ~ 39492865 (-) True G42674
TU47971 lncRNA upstream 29058 39515068 ~ 39515926 (-) True G42695
NM_001160543.1 mRNA downstream 121984 39357133 ~ 39359660 (-) True kip1
XM_036977122.1 mRNA downstream 145319 39315052 ~ 39336325 (-) True man2a2
XM_036977115.1 mRNA downstream 145320 39315052 ~ 39336324 (-) False man2a2
XM_036977133.1 mRNA downstream 145323 39315052 ~ 39336321 (-) False man2a2
LOC118966691 mRNA downstream 366547 39100825 ~ 39115097 (-) True LOC118966691
XM_021600938.2 mRNA upstream 44158 39530168 ~ 39543307 (-) False si:ch211-59o9.10
XM_021600928.2 mRNA upstream 44158 39530168 ~ 39543310 (-) False si:ch211-59o9.10
XM_021600945.2 mRNA upstream 48297 39534307 ~ 39543311 (-) True si:ch211-59o9.10
XM_021600958.2 mRNA upstream 57484 39543494 ~ 39547739 (-) True LOC110522511
XM_021600976.2 mRNA upstream 67421 39553431 ~ 39563161 (-) False LOC110522519
TU47067 other downstream 459619 39021805 ~ 39022025 (-) True G41868
TU45924 other downstream 1289908 38187488 ~ 38191736 (-) True G40768
TU45886 other downstream 1355919 38125280 ~ 38125725 (-) True G40732
TU45214 other downstream 1764611 37716540 ~ 37717033 (-) True G40079
TU43930 other downstream 2970815 36508538 ~ 36510829 (-) True G38855
TU52237 other upstream 3552718 43038728 ~ 43129029 (-) True tspan9a
TU55610 other upstream 6234795 45720805 ~ 45721124 (-) True G49774
TU55801 other upstream 6462948 45948958 ~ 45949951 (-) True G49962
TU57229 other upstream 7578764 47064774 ~ 47119033 (-) False G51214
TU57327 other upstream 7802929 47288939 ~ 47289681 (-) True G51285

Expression Profile