XLOC_025216 (ankrd40)


Basic Information

Item Value
gene id XLOC_025216
gene name ankrd40
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 18062871 ~ 18080924 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049805
CCATCTGAAGGTGTTACACCAAACATTGCCCCCAACATGGGAGGTGCAGCAGCGGATACGAGTGGATTGCAGTAGTCGGCGAAAGACGATTTGAACACAACCCGGTCTATTACAGTCTTTCCTTTTGAtctgatttcattattaatacGTCGAAACACACTCCCACCACCTCTCGGTCGAAAATCACCCACAGCGGGCAACTGTTTAATCCACGGCGGAGCAAGTTGACGGTCCGTTTTTGCTTCCCGTCTCAAAAGCACAGCGTGTCAGTTCGTATGAAGCTTTTATTTTCAGACAGAATTGAATAATGTCAACGACGTCGCTGGATAAAGAGCTGCAGGAGCGTCTGAGAGAGGCCAGTGCCATCGGAGACATTGACGAGGTGAAGACTTTGGTGGAAAGCGGAGTCAACGTCAACTCTCAGAATGAGATTAACGGATGGACGTGTCTGCATTGGGCCTGCAAAAGAAACCACAAACAGATAGTGGCCTATCTGCTAAACAATGGAGCCGACAAAGACATCCTCACAGCGAAAGAGGAGCTGGCCGTCCAACTCACCTCCAAACCTGAAATCAGAAGACTACTTGGAGtgGAAGAAGAAGACGAGCCTGAGGTGAAGGAACCAGAGCTGCCAATCATTCCCAACTATCTTTCCAACCCGCCCTTCCTGTACAGCAAGATGAACAAAGATAACCTGAGTATAGCACAGCAAAACGGCACCAACAGCACTCATGCAGAGCCCCTGGAGTCTGAACCGGCCACTCTCTCGCCAACACAAGAGCAGCAGCTTCCAGCGCCTTCACATCAGCAGCCCAAGAGCCTTTACACAGACAGCCAGAGCCAGCAGGAGCTGACCTTTGTCCCCGGCGTGGAGCAGAACGGCGTCGTGCCGAGCCCCGTGGTGAACGGTGGCCTGCCAATGGAGCTCTCGTCAGAGACTCATCACACTAACCACTGCGAGTTCACACACGCTCATCCCATAGCACAGAATGGCCCCGTGTGTCCCAGCGCAAGCACCAGCCAGCCTCCACAGCTCCCCGGCACCACCATCAGCCGGCAGCAGTCCATCCAGCCGCAGATCAACTGCTCCCAGATCAGCGGCTCCATGCCCGCCTTCCAGCCCTTCTTTTTCACCAGCACTTTTCCTGTTAACGTACAAGAGCTTGTCCTGAAGGTGCGCATCCAGAACACAAACATCAGAGAGAATGACTTCATCGAGGTGGAGCTGGACCGGCAGGAGCTGACGTACCGCGCTCTGCTCCGCGTCTGCTGCCGGGAGCTGGACATCAGCGCCGAGCACGTGGAGAAGATCCGAAAGCTGCCCAACACTATGCTCAGAAAGGATAAAGATGTGGCGCGGCTACAGGATTTCCAGGAGTTGGAGGTGGTGCTGGAGAAAACCGAAGGCTTGTCGCTGTTCTCTGCTCAGGGCGGTCTCACCGACAGGCCCTGCTACAACATGAAGGCCTCCAGACTCACCTACTAGCCTCCCAATCAGAGACTCGCCGTGAATCTGGGACCTGCTGCCTGAACTCCCAGACACGTATCAGATCCCAAAATATGGGTTGGTAAACCGGTTCAGAAAAACATGTTAGCCTTATTCCTCCTCTCCATTATTAACAGATGCATCCTTAGTGCCTCTCCTTCTCCATTGTATAACCATAGATGGCTTGTTTTTATAGGCTTTAACTTGATCTAGGGTGGACGGGATTTGCTCACGGCTtcaatttgaatatttaaatccATCCAGCTGACAATTGGACTTGAAAATGCACCACTTTTGCATACTGTCAGGCTCTACTGCCTCATATAAGGTCACTGTGTCGAACAAATGTACAGCGTCCCATTTCAACAGGCACTAAACTCTTGTTTATTGGTTGCATTGAGTGGCCACGTTAATATCATATCACATCAATGCGTTGAGTTCAAGAATTATTCAGTTTTGCCAGACAACTCTGTGCACTTTACCAAAACCTTGCGATTTATTGAAGGCGCGTCCGTTTTTATCAAACTTCCTTTTCGTTTAATTTCAGAGCTGTATTTGAATGCTGTTCAATCACTATAAGCcaaataattcataattagcaTGGACTGTTTGGAGTCTCATTGGCTTGTAGGAAGGCAAAAATGTCCCGTTTCTCTATGTAGCAAGAGATTTCTTCGTTTACCCCTTTGGAGGAGCTGAATTAGAGTTGAATAATAGGATATTTAACCACTGAGAGCTTCCAGTAAGCATCTTTCTGAGTTTTACGATGCTTGGTTCTCCTGTATTTGAGAAACAGGATCTGTGTTTAAGGTATAGAGGTAATAGTAGTGCCATTTTACTAAACTCTTTGCTGCATTGTTCATGTATGAGCATAAATTAATAACGGGGAATGCTTGAGGTTAGGTTTTGAAGCGGTGCATCGTCGAAACACTACATTAGATTTTGTCTTGATAGACATTTTGTTACTGTAAGAATTTCTGACGATTCGTCTTACAATTTGGTTTTAGTTTTTCTTGACTTGTCTTAACTGAAcattaaacatttgttaacaATATGCTACTACTATTGTTTAGATGTATTGTTAGCCCCTTGAAAAGACGTTGATAAATTATTGGCATAGGGTTTTTTTATGTGCAATTTTTTTTAGTATTCTATAATACTAGAAGCTGAGGATTAAACAGAAGTATTGTACACTTCGGTTGAAATAAAACAATCTCATTTTCTGTTCTTTCATACTTTGTCAGTTTACTAAAAAGATTGCCGTGGAGATGGTTGCAGGAGATATTTGTTTtcgtatttatttactattattttgtaAGGTAACACTAATGACAAGAATGGAAATTGTCAGGTAGATGTCAAGAAAATGCTTATCGTTTTATATTCTGAAgaactacaataaaaataaataaacaattaaaggcTTTTGATTGGCCACACTGTTTCCTAGTGCgattacaacaaatattttttctaccttatttttaagtttaacaCAGCCTATATTAGGGATGTCCAAGctcagtcctgaa

Function

symbol description
ankrd40 Orthologous to human ANKRD40 (ankyrin repeat domain 40).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-120612-2 Orthologous to human ANKRD40 (ankyrin repeat domain 40).

Ensembl:

ensembl_id ENSDARG00000076490

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049805 True 3018 mRNA 0.45 5 18062871 18080924

Neighbor

gene id symbol gene type direction distance location
XLOC_025215 NA coding upstream 1088 18040613 ~ 18061783 (+)
XLOC_025214 aclya coding upstream 53555 17951790 ~ 18009316 (+)
XLOC_025213 cnp coding upstream 115922 17933132 ~ 17946949 (+)
XLOC_025212 ttc25 coding upstream 134638 17910569 ~ 17928233 (+)
XLOC_025211 dnajc7 coding upstream 152496 17878124 ~ 17910375 (+)
XLOC_025217 wfikkn2a coding downstream 16776 18097700 ~ 18104658 (+)
XLOC_025218 NA coding downstream 108685 18189609 ~ 18197126 (+)
XLOC_025219 si:ch211-139g16.8 coding downstream 308439 18389363 ~ 18396564 (+)
XLOC_025220 rps2 coding downstream 317952 18398876 ~ 18403179 (+)
XLOC_025221 GAA coding downstream 332537 18413461 ~ 18423078 (+)
XLOC_025429 BX649540.1 misc downstream 12167815 30248739 ~ 30249036 (+)
XLOC_025203 CU207238.1 non-coding upstream 600986 17395239 ~ 17461885 (+)
XLOC_025197 BX470185.1 non-coding upstream 1179567 16874401 ~ 16883304 (+)
XLOC_025188 CR388224.1 non-coding upstream 1689744 16373012 ~ 16373127 (+)
XLOC_025185 NA non-coding upstream 1821531 16186593 ~ 16241340 (+)
XLOC_025227 NA non-coding downstream 589900 18670824 ~ 18672291 (+)
XLOC_025229 AL772362.2 non-coding downstream 690604 18771528 ~ 18788485 (+)
XLOC_025233 AL772362.1 non-coding downstream 786911 18867835 ~ 18867952 (+)
XLOC_025234 CU151886.2 non-coding downstream 811726 18892650 ~ 18892766 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_05167889_05175190 ANKRD40 coding CI01000034 null 5167889 ~ 5175312 (-)