XLOC_025220 (rps2)


Basic Information

Item Value
gene id XLOC_025220
gene name rps2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 18398876 ~ 18403179 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049809
GGCCTTCTTCTTCCTGAATACACATCACGTAAGTCAACATGGGTTTCTCGCTCTGATTATCTGCATCTGCTGCTATCCCTGCAATcgcaaaataaaaacatcaaaatgtGTTCAGGACATGTGTGCGCGTGGATTTTTAACCACATGATGAAGAAATTAATTATATGATTTtagtgtaaatgttttatttttatcgtAACTAGACTAGACGAGCGCAAAAATGGCGGCACGGGTGATCAGTCGTATAAATAGATGATATTgttaacatgtttaaaataagTAATGCGTACGGCTTTATTTTATCAGCTATAGTGTAAGTTACATGATAGTTAATGTAACGATAGTAACGCAACAAGCGCATGTTAATCGGCATGTGTCATAACTATAACGATATTCATAACGTGTTAATTAACGgaaaatgtttacatttctaTTCCAAAGCAAATGGCGGACGACGCCGGTGGTAGAGGAGGTTTTCGCGGAGGTTTCGGCACTGGCGGCCGGGGTCGCGGTCGTGGCCGCGGCAGGGGCCGTGGAAGAGGCCGCGGTGCCCGGGGAGGAAAATCCGAAGATAAGGAGTGGGTGCCTGTGACCAAACTTGGTCGTCTGGTGAAGGACATGAAGATCAAGTCCCTGGAGGAGATCTATCTGTATTCTCTGCCAATCAAGGAGTCTGAGATCATTGACTTCTTCTTGGGATCGGCGCTGAAGGATGAAGTCCTGAAGATCATGCCTGTCCAGAAACAGACCAGGGCCGGTCAGCGCACCAGGTTTAAG
>TCONS_00049810
GGCCTTCTTCTTCCTGAATACACATCACCAAATGGCGGACGACGCCGGTGGTAGAGGAGGTTTTCGCGGAGGTTTCGGCACTGGCGGCCGGGGTCGCGGTCGTGGCCGCGGCAGGGGCCGTGGAAGAGGCCGCGGTGCCCGGGGAGGAAAATCCGAAGATAAGGAGTGGGTGCCTGTGACCAAACTTGGTCGTCTGGTGAAGGACATGAAGATCAAGTCCCTGGAGGAGATCTATCTGTATTCTCTGCCAATCAAGGAGTCTGAGATCATTGACTTCTTCTTGGGATCGGCGCTGAAGGATGAAGTCCTGAAGATCATGCCTGTCCAGAAACAGACCAGGGCCGGTCAGCGCACCAGGTTTAAGGCCTTTGTTGCTATCGGTGACTACAATGGCCATGTTGGTCTGGGGGTGAAGTGCTCTAAAGAAGTGGCCACCGCTATCCGAGGAGCCATCATCCTGGCCAAGCTGTCCATCATTCCCGTCAGAAGAGGATACTGGGGTAACAAGATCGGAAAGCCACACACCGTGCCATGCAAGGTGACCGGTCGCTGTGGTTCAGTCCTGGTGCGTCTCATTCCTGCTCCCCGTGGTACTGGTATCGTGTCTGCTCCTGTGCCCAAGAAGCTGCTGATGATGGCTGGTATTGACGACTGCTACACCTCTGCCAGGGGCTGCACCGCTACTCTGGGCAACTTTGCCAAGGCCACCTTTGACGCGATCTCAAAGACCTACAGCTACCTGACCCCTGATCTCTGGAAGGAAACAGTGTTCACCAAGTCTCCTTACCAGGAATTCACTGATCATCTGGCCAAGACTCACACCAGGGTCTCCGTTCAGAGGACTCAGGGAGCTCTTCCTCAGGGAACCTCCTAAATTTTGTACAACGGATTGAAATAAAAGTCCAGAAGTAAAACCATC
>TCONS_00049811
AGCAAATGGCGGACGACGCCGGTGGTAGAGGAGGTTTTCGCGGAGGTTTCGGCACTGGCGGCCGGGGTCGCGGTCGTGGCCGCGGCAGGGGCCGTGGAAGAGGCCGCGGTGCCCGGGGAGGAAAATCCGAAGATAAGGAGTGGGTGCCTGTGACCAAACTTGGTCGTCTGGTGAAGGACATGAAGATCAAGTCCCTGGAGGAGATCTATCTGTATTCTCTGCCAATCAAGGAGTCTGAGATCATTGACTTCTTCTTGGGATCGGCGCTGAAGGATGAAGTCCTGAAGATCATGCCTGTCCAGAAACAGACCAGGGCCGGTCAGCGCACCAGGTTTAAGGCCTTTGTTGCTATCGGTGACTACAATGGCCATGTTGGTCTGGGGGTGAAGTGCTCTAAAGAAGTGGCCACCGCTATCCGAGGAGCCATCATCCTGGCCAAGCTGTCCATCATTCCCGTCAGAAGAGGATACTGGGGTAACAAGATCGGAAAGCCACACACCGTGCCATGCAAGGTGACCGGTCGCTGTGGTTCAGTCCTGGTGCGTCTCATTCCTGCTCCCCGTGGTACTGGTATCGTGTCTGCTCCTGTGCCCAAGAAGCTGCTGATGATGGCTGGTATTGACGACTGCTACACCTCTGCCAGGGGCTGCACCGCTACTCTGGGCAACTTTGCCAAGGCCACCTTTGACGCGATCTCAAAGACCTACAGCTACCTGACCCCTGATCTCTGGAAGGAAACAGTGTTCACCAAGTCTCCTTACCAGGAATTCACTGATCATCTGGCCAAGACTCACACCAGGGTCTCCGTTCAGAGGACTCAGGGAGCTCTTCCTCAGGGAACCTCCTAAATTTTGTACAACGGATTGAAATAAAAGTCCAGAAGTAAAACC
>TCONS_00049812
CAAATGGCGGACGACGCCGGTGGTAGAGGAGGTTTTCGCGGAGGTTTCGGCACTGGCGGCCGGGGTCGCGGTCGTGGCCGCGGCAGGGGCCGTGGAAGAGGCCGCGGTGCCCGGGGAGGAAAATCCGAAGATAAGGAGTGGGTGCCTGTGACCAAACTTGGTCGTCTGGTGAAGGACATGAAGATCAAGTCCCTGGAGGAGATCTATCTGTATTCTCTGCCAATCAAGGTATTGAAGTTGACATGAAAACTGGccattatatatgtataatatggTGTATATATTACAGTGTTTTCTATTTACCTACTATAATCATTACTAGCTTTACTTTGTATTGAATAATGTTATT

Function

symbol description
rps2 Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Is expressed in epidermis; mesenchyme; nervous system; pectoral fin; and pharyngeal arch 3-7 skeleton. Orthologous to human RPS2 (ribosomal protein S2).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko04626 Plant-pathogen interaction
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-040426-2454 Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Is expressed in epidermis; mesenchyme; nervous system; pectoral fin; and pharyngeal arch 3-7 skeleton. Orthologous to human RPS2 (ribosomal protein S2).

Ensembl:

ensembl_id ENSDARG00000077291

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049809 False 777 mRNA 0.45 3 18398876 18400693
TCONS_00049810 False 919 mRNA 0.55 8 18398876 18403179
TCONS_00049811 False 890 mRNA 0.55 7 18399315 18403176
TCONS_00049812 True 349 lncRNA 0.48 2 18399317 18399843

Neighbor

gene id symbol gene type direction distance location
XLOC_025219 si:ch211-139g16.8 coding upstream 2312 18389363 ~ 18396564 (+)
XLOC_025218 NA coding upstream 201750 18189609 ~ 18197126 (+)
XLOC_025217 wfikkn2a coding upstream 294218 18097700 ~ 18104658 (+)
XLOC_025216 ankrd40 coding upstream 317952 18062871 ~ 18080924 (+)
XLOC_025215 NA coding upstream 337093 18040613 ~ 18061783 (+)
XLOC_025221 GAA coding downstream 10282 18413461 ~ 18423078 (+)
XLOC_025222 gaa coding downstream 21065 18424244 ~ 18435575 (+)
XLOC_025223 tbc1d16 coding downstream 34218 18437397 ~ 18502030 (+)
XLOC_025224 cbx4 coding downstream 152720 18555899 ~ 18564030 (+)
XLOC_025225 cbx8a coding downstream 164381 18567560 ~ 18571115 (+)
XLOC_025429 BX649540.1 misc downstream 11845560 30248739 ~ 30249036 (+)
XLOC_025203 CU207238.1 non-coding upstream 936991 17395239 ~ 17461885 (+)
XLOC_025197 BX470185.1 non-coding upstream 1515572 16874401 ~ 16883304 (+)
XLOC_025188 CR388224.1 non-coding upstream 2025749 16373012 ~ 16373127 (+)
XLOC_025227 NA non-coding downstream 267645 18670824 ~ 18672291 (+)
XLOC_025229 AL772362.2 non-coding downstream 368349 18771528 ~ 18788485 (+)
XLOC_025233 AL772362.1 non-coding downstream 464656 18867835 ~ 18867952 (+)
XLOC_025234 CU151886.2 non-coding downstream 489471 18892650 ~ 18892766 (+)
XLOC_025235 CU151886.1 non-coding downstream 514282 18917461 ~ 18917583 (+)

Expression


Co-expression Network