RNA id: TCONS_00049812


Basic Information

Item Value
RNA id TCONS_00049812
length 349
lncRNA type retained_intron
GC content 0.48
exon number 2
gene id XLOC_025220
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 18398876 ~ 18403179 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAATGGCGGACGACGCCGGTGGTAGAGGAGGTTTTCGCGGAGGTTTCGGCACTGGCGGCCGGGGTCGCGGTCGTGGCCGCGGCAGGGGCCGTGGAAGAGGCCGCGGTGCCCGGGGAGGAAAATCCGAAGATAAGGAGTGGGTGCCTGTGACCAAACTTGGTCGTCTGGTGAAGGACATGAAGATCAAGTCCCTGGAGGAGATCTATCTGTATTCTCTGCCAATCAAGGTATTGAAGTTGACATGAAAACTGGccattatatatgtataatatggTGTATATATTACAGTGTTTTCTATTTACCTACTATAATCATTACTAGCTTTACTTTGTATTGAATAATGTTATT

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko04626 Plant-pathogen interaction
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-040426-2454 Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Is expressed in epidermis; mesenchyme; nervous system; pectoral fin; and pharyngeal arch 3-7 skeleton. Orthologous to human RPS2 (ribosomal protein S2).

Ensembl:

ensembl_id ENSDART00000133878

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052635 lncRNA upstream 202191 18189609 ~ 18197126 (+) False XLOC_025218
TCONS_00049807 lncRNA upstream 202191 18189685 ~ 18197126 (+) True XLOC_025218
TCONS_00052634 lncRNA upstream 352018 18040613 ~ 18047299 (+) False XLOC_025215
TCONS_00049802 lncRNA upstream 390929 18006111 ~ 18008388 (+) True XLOC_025214
TCONS_00049777 lncRNA upstream 743865 17653804 ~ 17655452 (+) False XLOC_025207
TCONS_00052636 lncRNA downstream 270981 18670824 ~ 18672291 (+) True XLOC_025227
TCONS_00049829 lncRNA downstream 371685 18771528 ~ 18788485 (+) True XLOC_025229
TCONS_00049852 lncRNA downstream 936682 19336525 ~ 19341041 (+) False XLOC_025242
TCONS_00049856 lncRNA downstream 956090 19355933 ~ 19360577 (+) True XLOC_025244
TCONS_00052334 lncRNA downstream 1073120 19472963 ~ 19473197 (+) True XLOC_025248
TCONS_00049808 mRNA upstream 2753 18389363 ~ 18396564 (+) True XLOC_025219
TCONS_00049806 mRNA upstream 294659 18097700 ~ 18104658 (+) True XLOC_025217
TCONS_00049805 mRNA upstream 318393 18062871 ~ 18080924 (+) True XLOC_025216
TCONS_00049804 mRNA upstream 337534 18050667 ~ 18061783 (+) True XLOC_025215
TCONS_00049803 mRNA upstream 348272 18046776 ~ 18051045 (+) False XLOC_025215
TCONS_00049813 mRNA downstream 13618 18413461 ~ 18423078 (+) True XLOC_025221
TCONS_00049814 mRNA downstream 24401 18424244 ~ 18435393 (+) False XLOC_025222
TCONS_00049815 mRNA downstream 25971 18425814 ~ 18435575 (+) True XLOC_025222
TCONS_00049816 mRNA downstream 37554 18437397 ~ 18498674 (+) False XLOC_025223
TCONS_00049817 mRNA downstream 37633 18437476 ~ 18470728 (+) False XLOC_025223
TCONS_00049790 other upstream 501465 17878492 ~ 17897852 (+) True XLOC_025211
TCONS_00049769 other upstream 876390 17472147 ~ 17522927 (+) True XLOC_025202
TCONS_00049766 other upstream 937432 17395239 ~ 17461885 (+) True XLOC_025203
TCONS_00049749 other upstream 1670302 16724614 ~ 16729015 (+) False XLOC_025193
TCONS_00049746 other upstream 1720667 16668603 ~ 16678650 (+) False XLOC_025192
TCONS_00049819 other downstream 37642 18437485 ~ 18469009 (+) False XLOC_025223
TCONS_00049828 other downstream 356419 18756262 ~ 18769951 (+) True XLOC_025228
TCONS_00049837 other downstream 467992 18867835 ~ 18867952 (+) True XLOC_025233
TCONS_00049838 other downstream 492807 18892650 ~ 18892766 (+) True XLOC_025234
TCONS_00049839 other downstream 517618 18917461 ~ 18917583 (+) True XLOC_025235

Expression Profile

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