RNA id: TCONS_00049819


Basic Information

Item Value
RNA id TCONS_00049819
length 594
RNA type processed_transcript
GC content 0.57
exon number 4
gene id XLOC_025223
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 18437397 ~ 18502030 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCCTCGATCTTTAACGTACGAGTAGGTCGCGCCGCTTCGGATATGGACGAGTAGCGACGGCTGTTCTCGTTTTTGGCACTGAAGttttttttttttttaaaggatgggAGCAGTGAGCGGTCACTGGAGGAGATGTCATTCGGTCGACTCCTGCGACGTGCATCCTCCAAAGCCTCTGACTTTTTGACGTTTAACGTGGGCACAGGGGGTTCCCGGAGCGTGCTGGATGGAGAGATCATCTTCTCCAAgaacaatgtgtgtgtgcatccTGCCGAACCCCTGCCTGGACTGCCTGAACATCACCCAGGTTATCTGTGCGTGCACCTGGAGAAAGACGAGACCCTTGGCTCCACACTTATCCTCACCTGGGTGCCTAACTCTCGCATCCAGCGGCAAGACGAGGAGGCCCTACGCTACATCACGCCTGAAAGCTCGCCCGTCCGCAGAAATCCCCGCCGCCGAGCCCACCGGAGCCACTCTCGCCCGCCAGCCGCCCCTGAGGAGGAGCAGCAGAATGTCATGGCATTAGAGCACCTGTGTGGCGTGTTCAGAGTTGACCTGGGTCACATGAGGTCACTCCGGCTCTTTTTCAG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0005769 early endosome cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-041010-179 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Predicted to be active in early endosome. Orthologous to human TBC1D16 (TBC1 domain family member 16).

Ensembl:

ensembl_id ENSDART00000144690

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049812 lncRNA upstream 37642 18399317 ~ 18399843 (+) True XLOC_025220
TCONS_00052635 lncRNA upstream 240359 18189609 ~ 18197126 (+) False XLOC_025218
TCONS_00049807 lncRNA upstream 240359 18189685 ~ 18197126 (+) True XLOC_025218
TCONS_00052634 lncRNA upstream 390186 18040613 ~ 18047299 (+) False XLOC_025215
TCONS_00049802 lncRNA upstream 429097 18006111 ~ 18008388 (+) True XLOC_025214
TCONS_00052636 lncRNA downstream 201815 18670824 ~ 18672291 (+) True XLOC_025227
TCONS_00049829 lncRNA downstream 302519 18771528 ~ 18788485 (+) True XLOC_025229
TCONS_00049852 lncRNA downstream 867516 19336525 ~ 19341041 (+) False XLOC_025242
TCONS_00049856 lncRNA downstream 886924 19355933 ~ 19360577 (+) True XLOC_025244
TCONS_00052334 lncRNA downstream 1003954 19472963 ~ 19473197 (+) True XLOC_025248
TCONS_00049815 mRNA upstream 1910 18425814 ~ 18435575 (+) True XLOC_025222
TCONS_00049814 mRNA upstream 2092 18424244 ~ 18435393 (+) False XLOC_025222
TCONS_00049813 mRNA upstream 14407 18413461 ~ 18423078 (+) True XLOC_025221
TCONS_00049810 mRNA upstream 34306 18398876 ~ 18403179 (+) False XLOC_025220
TCONS_00049811 mRNA upstream 34309 18399315 ~ 18403176 (+) False XLOC_025220
TCONS_00049821 mRNA downstream 86890 18555899 ~ 18564029 (+) False XLOC_025224
TCONS_00049822 mRNA downstream 86890 18555899 ~ 18564030 (+) True XLOC_025224
TCONS_00049823 mRNA downstream 98551 18567560 ~ 18571115 (+) True XLOC_025225
TCONS_00049824 mRNA downstream 110797 18579806 ~ 18650629 (+) False XLOC_025226
TCONS_00049825 mRNA downstream 110866 18579875 ~ 18632257 (+) False XLOC_025226
TCONS_00049790 other upstream 539633 17878492 ~ 17897852 (+) True XLOC_025211
TCONS_00049769 other upstream 914558 17472147 ~ 17522927 (+) True XLOC_025202
TCONS_00049766 other upstream 975600 17395239 ~ 17461885 (+) True XLOC_025203
TCONS_00049749 other upstream 1708470 16724614 ~ 16729015 (+) False XLOC_025193
TCONS_00049746 other upstream 1758835 16668603 ~ 16678650 (+) False XLOC_025192
TCONS_00049828 other downstream 287253 18756262 ~ 18769951 (+) True XLOC_025228
TCONS_00049837 other downstream 398826 18867835 ~ 18867952 (+) True XLOC_025233
TCONS_00049838 other downstream 423641 18892650 ~ 18892766 (+) True XLOC_025234
TCONS_00049839 other downstream 448452 18917461 ~ 18917583 (+) True XLOC_025235
TCONS_00049840 other downstream 466997 18936006 ~ 18967445 (+) False XLOC_025236

Expression Profile

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