Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00049802 |
| length | 1023 |
| lncRNA type | retained_intron |
| GC content | 0.37 |
| exon number | 2 |
| gene id | XLOC_025214 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 17951790 ~ 18009316 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006629 | lipid metabolic process | biological_process |
| GO:0006633 | fatty acid biosynthetic process | biological_process |
| GO:0006085 | acetyl-CoA biosynthetic process | biological_process |
| GO:0006101 | citrate metabolic process | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003878 | ATP citrate synthase activity | molecular_function |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0046912 | transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer | molecular_function |
| GO:0016829 | lyase activity | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-031113-1 | Predicted to enable ATP citrate synthase activity. Predicted to be involved in acetyl-CoA biosynthetic process and fatty acid biosynthetic process. Predicted to act upstream of or within citrate metabolic process and lipid metabolic process. Predicted to be located in mitochondrion. Predicted to be active in cytosol. Is expressed in several structures, including axis; digestive system; nervous system; optic vesicle; and periderm. Orthologous to human ACLY (ATP citrate lyase). |
| ensembl_id | ENSDART00000165104 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00049777 | lncRNA | upstream | 350659 | 17653804 ~ 17655452 (+) | False | XLOC_025207 |
| TCONS_00052633 | lncRNA | upstream | 1122807 | 16875757 ~ 16883304 (+) | True | XLOC_025197 |
| TCONS_00052632 | lncRNA | upstream | 1128415 | 16875494 ~ 16877696 (+) | False | XLOC_025197 |
| TCONS_00049755 | lncRNA | upstream | 1129853 | 16874401 ~ 16876258 (+) | False | XLOC_025197 |
| TCONS_00052631 | lncRNA | upstream | 1764771 | 16186593 ~ 16241340 (+) | True | XLOC_025185 |
| TCONS_00052634 | lncRNA | downstream | 32225 | 18040613 ~ 18047299 (+) | False | XLOC_025215 |
| TCONS_00052635 | lncRNA | downstream | 181221 | 18189609 ~ 18197126 (+) | False | XLOC_025218 |
| TCONS_00049807 | lncRNA | downstream | 181297 | 18189685 ~ 18197126 (+) | True | XLOC_025218 |
| TCONS_00049812 | lncRNA | downstream | 390929 | 18399317 ~ 18399843 (+) | True | XLOC_025220 |
| TCONS_00052636 | lncRNA | downstream | 662436 | 18670824 ~ 18672291 (+) | True | XLOC_025227 |
| TCONS_00049800 | mRNA | upstream | 59162 | 17939828 ~ 17946949 (+) | True | XLOC_025213 |
| TCONS_00049792 | mRNA | upstream | 61816 | 17933132 ~ 17944295 (+) | False | XLOC_025213 |
| TCONS_00049795 | mRNA | upstream | 65009 | 17933204 ~ 17941102 (+) | False | XLOC_025213 |
| TCONS_00049794 | mRNA | upstream | 65019 | 17933204 ~ 17941092 (+) | False | XLOC_025213 |
| TCONS_00049796 | mRNA | upstream | 65569 | 17933208 ~ 17940542 (+) | False | XLOC_025213 |
| TCONS_00049803 | mRNA | downstream | 38388 | 18046776 ~ 18051045 (+) | False | XLOC_025215 |
| TCONS_00049804 | mRNA | downstream | 42279 | 18050667 ~ 18061783 (+) | True | XLOC_025215 |
| TCONS_00049805 | mRNA | downstream | 54483 | 18062871 ~ 18080924 (+) | True | XLOC_025216 |
| TCONS_00049806 | mRNA | downstream | 89312 | 18097700 ~ 18104658 (+) | True | XLOC_025217 |
| TCONS_00049808 | mRNA | downstream | 380975 | 18389363 ~ 18396564 (+) | True | XLOC_025219 |
| TCONS_00049790 | other | upstream | 108259 | 17878492 ~ 17897852 (+) | True | XLOC_025211 |
| TCONS_00049769 | other | upstream | 483184 | 17472147 ~ 17522927 (+) | True | XLOC_025202 |
| TCONS_00049766 | other | upstream | 544226 | 17395239 ~ 17461885 (+) | True | XLOC_025203 |
| TCONS_00049749 | other | upstream | 1277096 | 16724614 ~ 16729015 (+) | False | XLOC_025193 |
| TCONS_00049746 | other | upstream | 1327461 | 16668603 ~ 16678650 (+) | False | XLOC_025192 |
| TCONS_00049819 | other | downstream | 429097 | 18437485 ~ 18469009 (+) | False | XLOC_025223 |
| TCONS_00049828 | other | downstream | 747874 | 18756262 ~ 18769951 (+) | True | XLOC_025228 |
| TCONS_00049837 | other | downstream | 859447 | 18867835 ~ 18867952 (+) | True | XLOC_025233 |
| TCONS_00049838 | other | downstream | 884262 | 18892650 ~ 18892766 (+) | True | XLOC_025234 |
| TCONS_00049839 | other | downstream | 909073 | 18917461 ~ 18917583 (+) | True | XLOC_025235 |
