RNA id: TCONS_00052636


Basic Information

Item Value
RNA id TCONS_00052636
length 1468
lncRNA type antisense_over
GC content 0.29
exon number 1
gene id XLOC_025227
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 18670824 ~ 18672291 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCACCCACCTGCATAACATGACAGATGGAGAAGGTGTGAGACAGAAATTGCATTAATTCCAAGATTTTAAAAAGCCAAAACAATAAGACTAAAACAaggaagcaaacaaacaaaaacattgcttggagtaaaataaatgttaactgaAATGTGATATacaatttacagttgaagtcagaattattagcccccctttactttattttttaatttgttttaaatattttacaaatgatgtttaacagagcaaggaaattttcacagtatttctgataatattttttcttctagagaaagttttatttgttgtatttccgCTACAACaaaagcagttataaatttttaaaaaaaaagttttaaggtcaaaattatttgcccctttaagctatattttgtttcgaGAACAtgccatcgtcatacaataacttgtctaattaccctatcctgtgtagttgacctaattaacctagttaagcctttaaatatcacattaattgtcttgaaaaagatttagtaaaatattatttactgtcatcatggaaataataaaataattcagttatcagaaattagtcattaaaagtattatgtttagaaatgtgctgaaaagatcttctctcccttaaatagaaattgaggggaaaaaataaacaagggagctaataattcaggggggttaataattcagattGCAACTGTTATTTCATTCAGTTAccaagtaaacttttttttagtattgtttaaaataaaaaaaaagtaaaacaagcaaataaagtAATCAAAACTAGATGGACATtttggaaaaataataaaaacacaaacaataaacagTAAAATGGTCAAACTTCACATTAAGATTTCATTTGTGAACATGAGTTCACTGCATTAACATAAATGAACAGAATTTGTGAAAAGATCCTACagtataaatgttaatttctgttttaagctataaatatgaatatttagcCAAGGCTCTGTAAACTAACATGAATAACCAATGaacaattgtatttttattaagtaaCATCAACAAAGATTAATACGTGTTTTAAAATGTACACTACAGTTTgggttaactaatgcattaactaactaatgttaacaaaaataactgtacaactcatctattatttgttcttatTTTAGTGTGAATCATCACTTGTAATATGGACATGGTTTATTTGACTGAGATGAACTCACTTACTGGCCACCAAGTCATGTTTTTGCCAGCTAGAAAATATCCATCCACTGTGCTCCTCTTGGTCTTCCACATGGACTGTTGGGTGAGCAAAGGTTATAAATATGCCATATACAAGATGTTAAGTCATAAATGtgataagtaaaatatttacacagcaatgtttttttattgagcATTGCAAAAAGAACAAGAATATAAAGCCTAAAGGGGTCACTGTATAATTACATGGTCATGATTGTGATTTCAGGAAACGTACCCACAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049812 lncRNA upstream 270981 18399317 ~ 18399843 (+) True XLOC_025220
TCONS_00052635 lncRNA upstream 473698 18189609 ~ 18197126 (+) False XLOC_025218
TCONS_00049807 lncRNA upstream 473698 18189685 ~ 18197126 (+) True XLOC_025218
TCONS_00052634 lncRNA upstream 623525 18040613 ~ 18047299 (+) False XLOC_025215
TCONS_00049802 lncRNA upstream 662436 18006111 ~ 18008388 (+) True XLOC_025214
TCONS_00049829 lncRNA downstream 99237 18771528 ~ 18788485 (+) True XLOC_025229
TCONS_00049852 lncRNA downstream 664234 19336525 ~ 19341041 (+) False XLOC_025242
TCONS_00049856 lncRNA downstream 683642 19355933 ~ 19360577 (+) True XLOC_025244
TCONS_00052334 lncRNA downstream 800672 19472963 ~ 19473197 (+) True XLOC_025248
TCONS_00049864 lncRNA downstream 993049 19665340 ~ 19677031 (+) True XLOC_025251
TCONS_00049826 mRNA upstream 20184 18634685 ~ 18650640 (+) True XLOC_025226
TCONS_00049824 mRNA upstream 20195 18579806 ~ 18650629 (+) False XLOC_025226
TCONS_00049825 mRNA upstream 38567 18579875 ~ 18632257 (+) False XLOC_025226
TCONS_00049823 mRNA upstream 99709 18567560 ~ 18571115 (+) True XLOC_025225
TCONS_00049822 mRNA upstream 106794 18555899 ~ 18564030 (+) True XLOC_025224
TCONS_00049827 mRNA downstream 83940 18756231 ~ 18769763 (+) False XLOC_025228
TCONS_00049830 mRNA downstream 123279 18795570 ~ 18796559 (+) True XLOC_025230
TCONS_00049831 mRNA downstream 134715 18807006 ~ 18839529 (+) False XLOC_025231
TCONS_00049832 mRNA downstream 135233 18807524 ~ 18839232 (+) True XLOC_025231
TCONS_00049834 mRNA downstream 168519 18840810 ~ 18920244 (+) False XLOC_025232
TCONS_00049819 other upstream 201815 18437485 ~ 18469009 (+) False XLOC_025223
TCONS_00049790 other upstream 772972 17878492 ~ 17897852 (+) True XLOC_025211
TCONS_00049769 other upstream 1147897 17472147 ~ 17522927 (+) True XLOC_025202
TCONS_00049766 other upstream 1208939 17395239 ~ 17461885 (+) True XLOC_025203
TCONS_00049749 other upstream 1941809 16724614 ~ 16729015 (+) False XLOC_025193
TCONS_00049828 other downstream 83971 18756262 ~ 18769951 (+) True XLOC_025228
TCONS_00049837 other downstream 195544 18867835 ~ 18867952 (+) True XLOC_025233
TCONS_00049838 other downstream 220359 18892650 ~ 18892766 (+) True XLOC_025234
TCONS_00049839 other downstream 245170 18917461 ~ 18917583 (+) True XLOC_025235
TCONS_00049840 other downstream 263715 18936006 ~ 18967445 (+) False XLOC_025236

Expression Profile

//