RNA id: TCONS_00049823


Basic Information

Item Value
RNA id TCONS_00049823
length 2763
RNA type mRNA
GC content 0.37
exon number 5
gene id XLOC_025225
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 18567560 ~ 18571115 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCAGGCAGAGGCTGAGAGGGGAAAAAATAGCTGCGAGGTTGAAGTAAACATGGAGCTCTCTGCCGTCGGGGAGCGGGTCTTCGCCGCTGAATCCATCATTAAACGGCGCATAAGGAGAGGGCGGATGGAGTATCTGGTCAAATGGAAAGGCTGGTCTCAAAAATACAGCACCTGGGAGCCAGAGGAGAATATTCTGGATGAGCGTCTTTTCGCTGCTTTTGAAGAAAGGGAGCGTGAGAGGGAGATGTATGGGCCAAAAAAGAGAGGACCTAAACCAGAAACGTTTCTAATGAAGGCAAAAGCTAAAGCAAAAAGCAAAACCTATGAGTTTGGACGAGAGATGTCCAGAGATATACGTGTGTCTTTTCCAGTAGCAGAACCTGTTGTGACACCCAGAGCACGTGAGGGACTGCGGACAGTTGTGCCAACAATCTTTCCACCTAGCACCATTAACAGAGGTGAAAGTGTTCGTGTGCGTCCACCAGACTCTGAAAGAGACACCCTGACACATGGCACTTCAATCCAGTGCCCACTTGATTTTGCCAACTCACCAAAAAAGCGAGGACCAAAGCCAAAAATGCATCCAGCTGGAGGGTCATCCTCTGAAGGCATTAAAAGAAAGGCAGATGAATCGTTATCTTACCGCCCTTCCAAAACCGAGAGATCAGGAGAGACCTCTAACTGTGATATCATGCATTTTACCCAGAAATACAAAGCAGAAACCACCCATGATGGGAAGCAAATGGGAAGCAGATCCAGTGATGTGAAATTTTCACATGGTGGAAGCTTCTTAAAAGCTGGGCTAGGCATTTTGGGACATCGACAAAAGGTTGGCTCTGGTGGTGCCATAAACCAACAAGCCAAGATGAAGCATCCTCCCAAAAACAATCTATTTCGATCCACTGATCAAACCAGAGAGCAGCTCTCTCTGAGCTTTGTAGATGATACAGACCAGTCCTGGCTGCCTTGTTTGAAGAATATGGAGAAAATTGTTGTTACTGATGTAACAAGTAACTCATTGACTGTAACCATAAAAGAGAGTTCAACAGACAAAGGGttctttaaagaaaacagatgaTGAGATAGTTTATGTATGTATGATGATATATTGTAatcaaagtagaaaaaaaaacttacatttctaTATCATTTCTAGTCTATAAAGTCTTTCAATCGTGTAtataatgcaaaaatatatatagtatatgttTAGCCTACATTTCCATTCACgttttctatgaaaatgaagtttatttttctatttccCCAGATTTTTATGTAACTTTACCCCTTTTGGTTGCCTTGGTCAGCTTTATTATGAATGTAGGGCATAGAAGCTGTTAACATATACTAACGTTTCAACGTAATGCACCTTTTAAAGGGACATATTGTTTAGTCCCTTTTTATGAACTTATTTTTTCCGGATAGATTTTGTACATACTTGAAGGTCCAAACGGTAGTCTCTATTAAAGCACACCCTTTAAAAGGCATGAAGGGAAATAAGCTACATGCATTCATAAACTTGTTTTAGGCCTAAAAATTTCCGCTTCAGAATcatttttcgtttttctgctcaaTATATGACTTACGATATCTTTTCCCCTCTTTAAAAACTACACAGGTATTTGATTGGTACGAATTGATTTCAAGTCGCTCAAGTAGCAACTCGTAGACAACAATTAAATcgtattaatataattaaaacgACATTATATTAACCCGGAATTAACGGTTCGGCTTTTGCAGAGGggaagaaaacaaagaaaatgttCAAATGTAATTGGTTATTTAGTGCATTATTGATTTCATCCAATTCTTCGCtaattttacgtttttttccgTATATTCAGTTTCTATCCAGTCTTATGTTAGCCTAATCGAATTAATAAACCATACGTCGATGTTTTTATTACAGACCCAGTTACTGTAAacgattaaacataaaaaaataaacctatATATCATATATAGCTTAATCTCAAAAGCATGCCGACCTTCTTGGGTGAAGTAGATCATTAAGATCTGATGTCTTTCAAAAATTGGGGTGAACAATCTGCGAATGATCCAACCATTCGTCCAAAGATATTCACTCGGTTTCAGGCTTATTTTTAATTACCTACCGTGTACTGTAAATCTAtaaaattaattactattattattattatagctgcAAAATTTATTcgtatttttatgatttaacaattataaaaaagcCACCGCAATCCCACACTGTCGGAAACAGAAACCACTGTAAGGGGATAAAcgtaagttttcatttttaataatctaTAGGGGAAGAAATTATTTCTGGAATAAATCATGGCTGTTGACTAAACAATatgaacattattttaataacacaTAGAAACACAAAACGTTTTCCTAATCACGGTGGTTTCAAATTAAAATTGATATCAAAATTACATTTCTGTAGATTTATTAACAAAAGCGCTTGTTGAAGAAGTTCAGTCCACAAGATGTCGCCATGAACTTGATATAGCAAATCCGTGTATACTTTTAAAAACCCGTTAATACCATCTACGGCTTATGTACTGTGATCTTTGCTTTaaagttaaaatgtaaatgtttaaaacgCATTTAGGCCTATAAATAGCAGTCACAGATGTTCAATGTGtcaaatgtttttgtgtttgtatactgtatgttttcattGGTTTATTGATTTTGGACTGTCTTGTGTTTTATGATTCAGatgtaaaaaaaacagtcaatatAACACTGAAATAAATGTGAGAACAAT

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040405-1 Predicted to be located in nucleus. Is expressed in several structures, including digestive system; eye; heart; pectoral fin bud; and pleuroperitoneal region. Orthologous to human CBX8 (chromobox 8).

Ensembl:

ensembl_id ENSDART00000124329

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049812 lncRNA upstream 167717 18399317 ~ 18399843 (+) True XLOC_025220
TCONS_00052635 lncRNA upstream 370434 18189609 ~ 18197126 (+) False XLOC_025218
TCONS_00049807 lncRNA upstream 370434 18189685 ~ 18197126 (+) True XLOC_025218
TCONS_00052634 lncRNA upstream 520261 18040613 ~ 18047299 (+) False XLOC_025215
TCONS_00049802 lncRNA upstream 559172 18006111 ~ 18008388 (+) True XLOC_025214
TCONS_00052636 lncRNA downstream 99709 18670824 ~ 18672291 (+) True XLOC_025227
TCONS_00049829 lncRNA downstream 200413 18771528 ~ 18788485 (+) True XLOC_025229
TCONS_00049852 lncRNA downstream 765410 19336525 ~ 19341041 (+) False XLOC_025242
TCONS_00049856 lncRNA downstream 784818 19355933 ~ 19360577 (+) True XLOC_025244
TCONS_00052334 lncRNA downstream 901848 19472963 ~ 19473197 (+) True XLOC_025248
TCONS_00049822 mRNA upstream 3530 18555899 ~ 18564030 (+) True XLOC_025224
TCONS_00049821 mRNA upstream 3531 18555899 ~ 18564029 (+) False XLOC_025224
TCONS_00049820 mRNA upstream 65530 18447574 ~ 18502030 (+) True XLOC_025223
TCONS_00049816 mRNA upstream 68886 18437397 ~ 18498674 (+) False XLOC_025223
TCONS_00049818 mRNA upstream 96815 18437476 ~ 18470745 (+) False XLOC_025223
TCONS_00049824 mRNA downstream 8691 18579806 ~ 18650629 (+) False XLOC_025226
TCONS_00049825 mRNA downstream 8760 18579875 ~ 18632257 (+) False XLOC_025226
TCONS_00049826 mRNA downstream 63570 18634685 ~ 18650640 (+) True XLOC_025226
TCONS_00049827 mRNA downstream 185116 18756231 ~ 18769763 (+) False XLOC_025228
TCONS_00049830 mRNA downstream 224455 18795570 ~ 18796559 (+) True XLOC_025230
TCONS_00049819 other upstream 98551 18437485 ~ 18469009 (+) False XLOC_025223
TCONS_00049790 other upstream 669708 17878492 ~ 17897852 (+) True XLOC_025211
TCONS_00049769 other upstream 1044633 17472147 ~ 17522927 (+) True XLOC_025202
TCONS_00049766 other upstream 1105675 17395239 ~ 17461885 (+) True XLOC_025203
TCONS_00049749 other upstream 1838545 16724614 ~ 16729015 (+) False XLOC_025193
TCONS_00049828 other downstream 185147 18756262 ~ 18769951 (+) True XLOC_025228
TCONS_00049837 other downstream 296720 18867835 ~ 18867952 (+) True XLOC_025233
TCONS_00049838 other downstream 321535 18892650 ~ 18892766 (+) True XLOC_025234
TCONS_00049839 other downstream 346346 18917461 ~ 18917583 (+) True XLOC_025235
TCONS_00049840 other downstream 364891 18936006 ~ 18967445 (+) False XLOC_025236

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000034_04818587_04820434.mRNA True 3728 mRNA 0.37 5 CI01000034 4816685 ~ 4821234 (+)