RNA id: TCONS_00049832


Basic Information

Item Value
RNA id TCONS_00049832
length 6332
RNA type mRNA
GC content 0.42
exon number 25
gene id XLOC_025231
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 18807006 ~ 18839529 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGCGAGACTAGCGCGAGCTGATAAGTAGGCCTCCACACGCGGCATGTGATGGAGTGGCAGCCGGATGAACAAGGCCTCCAGCAGGTCCTGCAGCTCCTCAGAGACTCTCAGTCTCCAAACACAGCCACGCAGAGAGCTGTGCAGCAGAAACTGGAGCAGCTGAACCAGTTTCCTGATTTTAACAACTATCTCATCTTCGTCCTGACGAGGCTGAAAACTGAAGATGAGCCCACACGATCTCTCAGCGGTTTGATACTGAAGAACAATGTGAAGGTTCACTATCAGAACTTCCCTCCAGCAGTTGCACACTTCATCAAGCAGGAGTGCCTGAACAACATCGGGGACCCTTCGCCTCTCATCCGCGCCACTATcgGAATCCTCATCACAACTATTTCCACCAAAGGGGAGCTGCAGACATGGCCAGAGTTACTGCCTCAGCTGTGCAACATGCTCGACTCAGAGGACTACAACATCTGCGAGGGCTCATTTGGAGCTCTTCAGAAGATTTGCGAGGACTCTTCTGAGCTACTGGACAGTGATGCTCTGAACCGACCTCTAAACATCATGATCCCCAAGTTCCTGCAGTTCTTCAAACACTGCAGCCCCAAGATCAGGTCTCATGCTGTTGCCTGTGTGAACCAGTTCATCATTAGTAGAGCACAAGCCCTCATGGACAACATTGACACTTTTATTGAGAGTCTGTTTGCGCTTTCATCAGATGAGGACTCGGAGGTGCGGAAGAACGTGTGCCGGGCTCTGGTCATGCTGCTGGAGGTGCGAGTAGATCGACTCCTTCCTCACATGCGCAGCATCGTTGAGTACATGCTGCAGCGCACACAGGATCCAGATGAGAACGTGTCTCTGGAGGCCTGTGAGTTCTGGCTTACACTGGCTGAACAGCCCATTTGTAAAGACGTCCTGTCTGGACACCTTGCACAACTGGTTCCTGTTCTGGTCAACGGCATGAAGTACTCTGAGATTGACATCATTTTGCTAAAGGGTGATGTGGAGGAAGACGAGGCCGTGCCTGACAATGAGCAGGACATAAAGCCACGCTTTCACAAGTCTCGTACGGTCACTCTTCGGCACGAGGGTGATGAGGGGGAGGAAGGAGAGGACAGTGAAgatgatgacgacgatgatgatgacaGTCTGTCCGACTGGAATCTACGGAAGTGTTCAGCAGCTGCTCTTGATGTCTTGGCAAACGTGTTTCGGGATGAGCTGCTTCCTCACCTGCTTCCAGTGCTGAAGGAACTGCTGTTCCACCCTGACTGGGTGGTGAAAGAGTCAGGCATCCTGGTGCTGGGAGCCATTGCTGAAGGCTGTATGCAGGATATGGTTTTGTACTTGCCGGAGCTGATTCCTCACCTGGTCCAGTGTCTCTGTGATAAGAAGGCACTGGTTCGTTCCATCGCCTGCTGGACTCTGAGCCGCTACGCACACTGGGTGGTCAGTCAGCCGGCAGACTCCTACCTCAAGCCCCTCATGACTGAGCTGCTCAAACGCATCCTGGACAGCAACAAGAAGGTTCAAGAGGCTGCCTGCAGTGCATTTGCGACTCTGGAGGAAGAGGCCTGTACTGAGCTGGTTCCATACCTGAGCTACATTCTGGACACACTGGTGTTTGCGTTCAGCAAATATCAGCACAAAAACCTGCTCATCCTATATGATGCTATTGGCACCCTCGCAGACTCTGTCGGACACCATCTGAACCAGCCAGAATACATCCAAAAGCTCATGCCGCCTCTCATTCAGAAATGGAATGAGCTGAAAGATGAAGACAAGGATCTGTTCCCTTTGTTGGAGTGCCTGTCTTCAGTGGCTACAGCTCTGCAGAGTGGCTTTCTGCCCTACTGTGAGCCGGTTTATCAGCGCTGTGTCACTCTGGTCCAGAAGAACCTCGCTCAAGCCATGATGTATAACCAGCAGCCGGAGCAGTACGAGGCCCCTGATAAAGACTTCATGATTGTGGCTCTGGATCTGCTCAGCGGCTTGGCTGAAGGACTCGGAGCAAATGTGGAGCAGCTGGTCACTCGCAGTAACATCATGACCCTGCTCTTCCAGTGCATGCAGGACACAATGCCGGAGGTGCGTCAGAGTTCATTTGCTCTGCTGGGAGACCTGACTAAAGCCTGTTTCCTTCATGTCAAGCCCTGCGTTGCTGAGTTCATGCCTGTGCTGGGCCTCAATCTCAACCCTGAGTTCATTTCCGTGTGCAACAATGCCACGTGGGCCATCGGGGAAATCACCATGCAGATGGGTACGGAGATGCAACCGTTTGTGGCCCTGGTTCTCAATAACCTTGTGGAGATCATCAACAGACCCAACACACCCAAAACTCTGCTGGAGAACACCGCCATTACGATTGGTCGACTGGGATACGTGTGTCCACAGGAAGTTGCCCCTATGTTGCCACAGTTCATTCGCCCTTGGTGCACGTCACTCAGAAACATCCGGGATAATGAAGAGAAAGACTCTGCCTTCAGGGGCATTTGTGTGATGATTGGGGTAAATCCTGGAGGAGTCGTACAGGACTTCATCTTTTTCTGTGATGCTGTGGCCTCCTGGGTTACTCCAAAAGACGATTTGAGGGACATGTTTTACAAGATTCTGCATGGCTTTAAGGATCAGGTCGGTGAGGAAAACTGGCAGCAGTTCTCAGAACAGTTTCCACCGCAGCTGAAGGAGAGACTTTCAGCCTGCTATGGTGTGTAGATTCACTCTTGCGACATGGAAAACCAACTATTAAGGTCAAATCTACGGGAGGGTTACTGGGGAACTCATCCATGTCTGTTTGTGGGAACTACCTGCTGTTAGTGCCGGAGTCGAGTGATGGTTTGTGATCTGGAGGCTCCCACTTCCTCCTCCTATGTGAAAGAGGATTTGAGAGAGTTAATGTGAAATCAGCCTTTTTATTGTCACAGTTTGGCTTCCGACTCGCCCAGAACAGGAATGAAACATGAAGCTCAGGGATCTGGATTGGGAGGGGGAGGGTTCATTCAGGCAACATTCACCAGCTGCTTATTGGACAAAACAACGCCATTTTTAATAGTCCAGCCTTAGCAAAAAGCCTGGCTTCTCGGCTCCATGCCAAAAGCGCACGCTTGCAAAACACAAGTGGCAAACGTGCTCATGGCACACCATAACTGAACAAAGTTGTTTTCTAGAAgagatagatcacccaaaaatgacaaatttcacTCGTCTCATTTGAAATGTGCACAATTTCTATTCTGCATAAAACAAGTGGATTAAATCTTATAATAGGACAGAGTTTTGTAGTCGCTGTGCATCATATTTCAAGTAATCAGGCCTTGCAATGGTTTGAGAAAATGGCTGCAGTTTAAGTAGTTCACTGAGAGTGTTGCTCAGTTCTATTTTTATCACACAATACAAGGTTTACTTAATCTTGCTTTTTTAAAGCGGTAGTCGCAGTCCACTTGCGATTCTGtagaaattttaatttttgggtgcactttcactttaaaagttattagtttaaaaggtaattacatttttatgacCTTTAGGGTTGGCTAATGACAAAAGCATGCAATCATTATGACCTAATAAGTACATTTCTTCTGTATTTTCTGCTTGCTTGATTTTCCTTCATGGCTATGCGTTACATTTGAGCTATTTCATTCCATAAAGAGACTGCTTCATTTGATAGTCAAATAATTCTGCTGTAgcctgtaaaaggaaccttaatGGAATTGTTGATTTCTATGGTGGTCATAGCAAAGTAATTTTCAGATTTAGTTGCTGTTGTCTGCGAAGATGTatttaagcattattattattattattcattttgtgTCGCAAATGCTGCGTAAGAATATTGATCTAAGAAACCCTGCACCAAAAATTCACTGTAGAGATTAATTTGCCTTTTGCTGCTTTTAAAAGAACTTGAATAACTCTAGATAAATATCTATAATTATCAAAAGGAAAGTTCAAGtgaaaatgattataaaatgcttttcatttactcactctcaggccTTCAAGATGTGcactgtaataaaattaaaacaaaaacatgttgtaACATGTCCCCCCCCATGTTTTTAATGGTTTTCAATTTATTCCACTGAATttattcaacttattttaaaaaagctgaaacacaattcttgagttgttttgggacaacttaattgttttgtaatcaatccacttaaatttgtaaactaataagCCAAcgtaattctttcatgttgtcctaacacaaatcgattgtgtggaacccagcacgaTTTACAGTgtatgggatcttgatctctgTCAACCTTTGATGTTGAAATTTCAACTCTGCTTTTAaacaatgattattattattgacatcaTGTATAATAATGTATAGAAAATTCAGTTCGTAACAtgattaataatatgataatattatataataatatgaaataatactaCACTGTtaccagcatgttttttttttaaccataatgTACAACACCAGCTCAAACAATGCATCACTTACTCAAATTTCAATATCTTCTTTTTTCTACCTCAAAAGTTGCTGGAGTAAAGATAGTCAAGGtcttaaaatgcaaattcaaaatCATACCAAAGTTACGGGGAGATTTAAGTTACAAAATAAGcaaattttaattaaaagagttgaatttaaatttttttacagagATAGCTGTGGTCTGTGTTTCATGAAATGCAAGCTGGCTTTTGAGAGTCCAAAAATAAGGTAAAAATCCAACACCCAAGCTGTGGCTTTAGTAATTACATTGAATTCTTATGAAGCAGAACATTTGTATGCCCAGATTGTGGATTGCTTATGTTTTTCTATAGACCTTAATGTGTTCACAGCAGTCTCTTAGCGTGATGGTTTAATTATATTAGATATTGAATGTATTTTTGCCTGTGTATGTCTTCCGAGTCTTAGCCactgacttgcattttataaatcacaGTTTCGGCTAAAATGTTTTGATTAAGGACACAATGTCGCCTACATTGGGAGGTCTGAGGGGACATAAATAGAAtacatgttttcatttttgcTTGAACTGTCCATTTAAGGAACTCTAGTTGCTGGTGTTATCGACGTGCACTTTCTCTAATAAGAACTTTCAGGATCCCGCTCAATGGGTATCCTATTAAAGATATGAAGGCTGTTTTAAAGAGTAAGAATGCTTGGCTTGTATAAGGACAATCTAATTGCCACATGATTATAAATGGTATTTCTTTAATTAGCTTAGGTTTAACACTGAATATAATTTTGGTAAGGAAATCTAGACTGATAGCACGTAATGTGGTTCCTCTACACAATATACAGACTGATCAATTCTGGGAAATGCAAACAGTATAGGTAAAGTCCTGCTTAACTTAAAATAGTCCAATttcattgttgtttttaatatgatGTTGTTCTGTCGAAGAGATTTAGGGAAAGGGTTTCCAAGTCTTTTCCCCCCTTTATTTTTAGTTGCTTTGATCATGCTTGCGCTGTTTTAAATGCCTGTTAAAGCAATATGCATGTCCGTTTCTATGAAAAGACAGTTGCATCTTAAGGTTTCTTCCCTCATCATTAAACACTAGCTCTGACaatctcatttttaaaatgtaaacatttttgtaaGCTGCTTTACCCTTTAGGGATATTTTTTCCACCTCCccgttaatttttttgtaatggcCTGTATTTCGATATTTAGTCAATACATTGCAAAGATTTGGAGAACAACTGTTTAGATGAGACCTTTTGAATTCAAATGAACTCTGGTTTAAACTTAGTTAAGAGAAAAATGTAAATGCGAAGTAGATCTTAAATTGTGGTAACATCATACTTTTAAGTATTTAGAATTGGTTAACTGAAACTAACATAATGGAGAAGCCTTGATTCTAAGTGATTTGTGCACTGCATTTGCTCCTGTTACTGTAATGACAATATGCTGCCAAGCAGACCTGTGTTCCTCCAAGAACTTAGTATTTTTttaacgtttttatttacattaatttttaaacttttatttaaagttattttaagttaaatgtttttaagtgtttaatatgcttttgttttaatattttgttttgtgcgCACGCACAAAGATTTTGTTAGACTTTAAAAGTTTTTCTtttggttttctttttgtttaaagaattttGATTTGGTTTTATTCAGACAgttggagaaatgcatttagctTATGATTTTCAGAAAGTCTGCTGAAGCATTAAGATGTCTTTTCCCTCCTCCCCCTTTCTCATTTTGGACGTTGACCTGTTTTTCAGTAATCACCTTTCTTTAAATACTTTGATTGGGGAAATAAACTATTTCTGTCAAATTAAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006606 protein import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008139 nuclear localization sequence binding molecular_function
GO:0061608 nuclear import signal receptor activity molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-040822-16 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in cytoplasm and nucleus. Orthologous to human TNPO2 (transportin 2).

Ensembl:

ensembl_id ENSDART00000055757

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049829 lncRNA upstream 19039 18771528 ~ 18788485 (+) True XLOC_025229
TCONS_00052636 lncRNA upstream 135233 18670824 ~ 18672291 (+) True XLOC_025227
TCONS_00049812 lncRNA upstream 407681 18399317 ~ 18399843 (+) True XLOC_025220
TCONS_00052635 lncRNA upstream 610398 18189609 ~ 18197126 (+) False XLOC_025218
TCONS_00049852 lncRNA downstream 497293 19336525 ~ 19341041 (+) False XLOC_025242
TCONS_00049856 lncRNA downstream 516701 19355933 ~ 19360577 (+) True XLOC_025244
TCONS_00052334 lncRNA downstream 633731 19472963 ~ 19473197 (+) True XLOC_025248
TCONS_00049864 lncRNA downstream 826108 19665340 ~ 19677031 (+) True XLOC_025251
TCONS_00052637 lncRNA downstream 1220446 20059678 ~ 20064732 (+) False XLOC_025257
TCONS_00049830 mRNA upstream 10965 18795570 ~ 18796559 (+) True XLOC_025230
TCONS_00049827 mRNA upstream 37761 18756231 ~ 18769763 (+) False XLOC_025228
TCONS_00049826 mRNA upstream 156884 18634685 ~ 18650640 (+) True XLOC_025226
TCONS_00049824 mRNA upstream 156895 18579806 ~ 18650629 (+) False XLOC_025226
TCONS_00049834 mRNA downstream 1578 18840810 ~ 18920244 (+) False XLOC_025232
TCONS_00049833 mRNA downstream 1578 18840810 ~ 18920244 (+) False XLOC_025232
TCONS_00049835 mRNA downstream 1661 18840893 ~ 18866536 (+) False XLOC_025232
TCONS_00049836 mRNA downstream 7256 18846488 ~ 18923915 (+) True XLOC_025232
TCONS_00049841 mRNA downstream 96777 18936009 ~ 18967653 (+) False XLOC_025236
TCONS_00049828 other upstream 37573 18756262 ~ 18769951 (+) True XLOC_025228
TCONS_00049819 other upstream 338515 18437485 ~ 18469009 (+) False XLOC_025223
TCONS_00049790 other upstream 909672 17878492 ~ 17897852 (+) True XLOC_025211
TCONS_00049769 other upstream 1284597 17472147 ~ 17522927 (+) True XLOC_025202
TCONS_00049766 other upstream 1345639 17395239 ~ 17461885 (+) True XLOC_025203
TCONS_00049837 other downstream 28603 18867835 ~ 18867952 (+) True XLOC_025233
TCONS_00049838 other downstream 53418 18892650 ~ 18892766 (+) True XLOC_025234
TCONS_00049839 other downstream 78229 18917461 ~ 18917583 (+) True XLOC_025235
TCONS_00049840 other downstream 96774 18936006 ~ 18967445 (+) False XLOC_025236
TCONS_00049842 other downstream 96814 18936046 ~ 18939700 (+) False XLOC_025236

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000034_04710539_04725888.mRNA True 3602 mRNA 0.47 21 CI01000034 4709413 ~ 4725888 (-)