RNA id: TCONS_00052637


Basic Information

Item Value
RNA id TCONS_00052637
length 5055
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id XLOC_025257
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 20059678 ~ 20064732 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACAGCTTTTAAAATCTTTtcaaaagaatattttttaaaaatcctcaTATATAGTCGAATTCCAAGAATCAGGAATTGCTGCCTAAAGAGAGGAATTAAAATCCAGCCCGACACATAATGGTTGATGTTCATTACACCAGCCCTAAGAGTTTACACTCATTGTAGGGAATCACTcgagtaaaaaaaactaaaactaatgaattGTGACAAACATCTGAGAAAAAAAGTAAAGCCCACATAGTTATCACTTTTTTCGTgaaattaataaaggaacaagAACACTTCAATTGTTGGTCCTGACTTTCCATTTAACCCAATCTAaacaagtgtatgggtgttttgtttgtctgtttttaaacCACTCAAAGCTTCtatggctattttcatggcatGAAAATGCAtgcagcatttaaaaataaaacttttatatttgattatctGTAAGGTTGTATTTGCTTTAACAGCCTTTGAAATCTTTTCAAacgaattacaaaaaaaatcctcatatatatttttgttgaattCCCTAAATCAGGAATTGCTGCCTAAAGAGAAGAATTAAAATCCAGCCCCACACATAATGTTGATGTTCATTACACCAGCCCATTTATGTTCATTGTAGAGAATCAGtcttgagaaaaaaataataataatcatgactAAAAAATCTGAGACAAAatttaagttttcacttttttttcaatgctgtttttcaagtgtttgtttgtgttcaacaccATTTAAGGTTCAATAGCTATTTTAAAAGTGAGAACATGTGCATTATGGTCAAATGTTGCATGTTTGATGGTCACTACACCACCCCTAAGTGTTTACACTCATTGTAGGGAATCACTCgaggaaaaaactaaaactaatgaattGTGACAAACATCTGAGAAAAAAAGTAAAGCCCACATAGTTATCACTTTTTTTCGTgaaattaataaagaaacaagAACACTTCAATTGTTGGGCCTGACTTTCTATTTAACCCACTCTAaacaagtgtatgggtgttatgtttgtctgtttttaaacCATCAAAGCTTCTATGGCTATTTTCATGGTGTGAAAATGCATGCagcagttaaaaataaaacttttatatttGGTTATCTGTAAGGCTGTATTTGCTTTAACGGCGTTTAAAATCTTTtcaaaagaatatttaaaaaaaatcctcatATATAGTCGAATCCCAAGAATCAGGAATTGCTGCCTAAAGAGAGGAATTAAAATCCAGCCCGACACATAATGGTTGATGTTCATTACACCACCCCTAAGTGTTTACACTCATTCTAGGGAATCACTcgagtaaaaaaactaaaactaatgaattGTGACAAACATCTGAGACAAAAAAAGTGAAGCCCACATAGTTATCACTTTTTTTCGTgaaattaataaagaaacaagAACACTTCAACTGTTGGTCCTGACTTTCTATTTAACCTAAACAAGTATATGGgtgttttgtttgtctgtttttaaacCATCAAAGCTTCTATGGCTTTTTTCATGGCGTGAAAATGCATGCagcagttaaaaataaaacttttatatttGGTTATCTCTATCTCTCTAAGGCTGTATTTGCTTTAACGGCGTTTAAAATCTTTTCAAacgaatatttttaaaaaatcctcatttatagtCGAATTCCCCGAATCAGGAATTGCTGCCTAAAGAGAGGAATTAAAATCCAGCCCGACACATAATGGTTGATGTTCATTACACCGCCCCTAAGCGTTTACGCTCCATCGTGAGACAGAGCCCATTGCTTGTGACGGTTTCAAATCTCAAATAACTCTGCAGTCGACACCAGCAAGAGCAGCCAATCCGTCTAATCTTCCATTTTGTCTACTGAACTAAGACTTAAAACGGCATCTCCAGCGCTCGACTCGCGTTTTTTGGCACGAGCCTTTCGTTGCGGAGCCTCAAAAATGGAGTATATTTTCGGCGGACGAGTGGATACTGGGAGGTACTACAGGACAGGAGGAGGAAGGAGCGTTTCGGGCGATAGGCAGGCAGCTGCCTCTACACGGACCAGCTGACCACGGATCGGGATCTGCTTTCGGTGTTCGTCGAGAGGGGGAAACACAGCTAGGGATGGATCATCATCATGAGTGACTGATTCAGCATGCAGCACCAGCGTCTGCCTCCACACGGGACAGGGCGCGGGGCTTCGCTTCCGCCGCGGACGCGCTCTGGGTCAGCCTCATTGCGACAGTATTAAAAACGCTCGACTGTTTTGGAGGGCTCGTCCTAATCTGATGCGGTTTAGCAAATGTGTGCACTGACTGAATTAGTCACAAAATGGCACGAGGCTTTTTCCAGGGCGAGGCGTCGCAGCTGCGCTGAATGTGTGTAATGGCGGCGCGTGAGCCAGCTCAGTCCAGCTTTAAAATAGACCCTGACTGAAGGGCATTTCTTACCATACTGAAATGCTCCCCAGGCAGCCGGGTGGCATTGCTTTGTGACCCTGTTCAAGCAGAATTGAGTTTTACAATCACAAAAATGTCCAGAAAAGCTGGTTGATTTAATAAGATTTTTAAAGAACAAAAGCTTTGGTAACGGAGCTCCAGGTTCAAGGAAAATACGTCAAAGTTAGTCTTTAAGTATTTATAAGGGTTCATTTAAAATTCATGtttcatacatttaattcggTTTCGGATATTACAAACACGTTTCTAAATCATACAATTAAtgctgtttaatgtttaaaacagTTTAGCTTATTTATCCAAGTGAAAACCTTAATAAATGGATTCATCATGTCCACAAACGATAGCTTTCAATCAATTATcttttaataaagttaaaatgtTACACTATTAAACCGACCTACGACTTGACCTACACCGGAGCTAGCTGGCTAGAATTAGCATTGAATCCCCCTCCAGCCAGTCTCTCTGGTGAGAGCTGAACCAGCTCCCGTTAAAGAAATCATCCAgaaattatgtttaattaaacCCAAAAAGCCATTGTTATTTAGTTAATGCTAAAAATTATTTCCAAAGTGTCCTCTTACCGTAAAGAAATCTGGTTTTTACCCCGACTTTTCGAGTGTCGAGGATAGCGGGGTGAAAGCACGGTGTGTGCAGCCGTATGGTAGCAGTCTCTTCAAAGGCTTGAAAAAcagaaatgaaagaaataaactgTTAATGTAAATCAATACTCGGCGATTAAAGCACAATTAAAACAAACGAAATCATCTCGGCGAGAAGCGACTCAATCCCGTGTGCAAACGTGTAATTTTGTTCGTGGTCACAATGGAAAAACGCAACAGCCGAGAGAGAGGACGCTTGACTGGCGTGACGACTGTTCTAGAGCCGCCATACTATCCTCCATGCACGCTGCAAGCCCAAATCAACCCCAACGACAAAAAAACGACCACAAATCACCCATAACTTACCCGGTTCGCTCCTCAAGCACAGATAACCGAGGAAAACGATCAAATATGATCGCGAGCTATGATTTCACGGTAAGCACAAGCGAAAACAAGCCCACACGGTGAGACAACCAAGCTCCCTGATGGCGAACCAGAGGCGGCTGGTTCTTCCCTCCACGAGCCTCATGGAGTCCTGACTCGGAAATGAAGACGACCGCGCGGATTACTTCCAAACACGACAAAGATGCACGTTTTGCGCGTTAAAACGAGGTTAACGGCTTGTGGAGTTAAACTCGAAAATTAACGGTTCTGGTATTTAAAGCGGAGGATGTTTTTCCCCGAGTCACAGGACGGGAAATTCGGGTAAGGCGACCTCGGAATGTACCGTGCCTTGCACCGAGTCAACGCGAATTTAAACAAAAACCCCATCAGTGAGCTaaagtttaaatgtttatatttgcttttgatgttgtttttcttCTCAATGTTTGTTTACCCAACGGTTGGTAGGATGAGGCGCTGGTTAGACCTTACCTGTCGCTGCTTGTGTGTGGAACTGGTGCTGGAACAAGGGGAGGGTTGAATGTTAGCCAGCACTGCGCCGCCGGTCCAGGGCACGGGCGCTCCAGTCCCCGCAGAGCTGAGAGACTTCCCCCCGCCTCCATCTCTCTCGCTCTCCTTCCAGTCAACGCGCAGCTCTCTCGATCCGCTCATTTCTCTTTCCAAAGAGACATCCGCATTTTCAATCTCTCCCCTGCTCGCCGCTCTCATCACGGACGGCTCGCCCGTTTCGCCTCCATTCGGCATTATAAACACGGAGCTACCGAGGCGCCATCAAACCCAGTGGTGCGCGCGTGTTGCACTTCGGACTTGTTTTGAACACATTTTTCTCTTGATTGATCATGCATATTTCaataaactttattaaatatGCTTGCATTGTGTTTTGTGATGACTATTATCATTATAAGACACATTTAGTCAAGCAGGTTGCTTTCCCAGAGCGCGTGCACGGTGTGAAAGAAGAGTGAACTGTTGTGTACATTAAACatcttttcagcattttcagtcTGACAGCTTCATCTTTTTTGTCACGTTAAATAATTAAACCCCACCTTGTCTGTTTGTGGGCGTCACCTGAAATGTCCAATCAAGACGTTgtgatttggtaaaaacatgatTTTCCAATGGGCGCGCGGATTCGTTAAACATCAGAGCGGTGACGTGCGCACTTCATCGGAATGAACGCCTCAGTCCCACGCCGGTGCCTCGGGGAACCGAATACAGGCCGGTGGAACAGCTCAAACCTTGTATAACAGTTGTCAACTTTTGAAGTAgatcaaaataaatgttcaaaattaTTCCAAGACAAAACTGGGGGTAACTGATGAGATTTAGGACAACTTTAAAGATCTTTAATGTTCACCTCTGTAGTTTCCAGTGTGAGCTGTAATGCTAACTCTTGAAatcatttaacatgtttaatttttttgtgcacTATTGAGATTCACGTATACATACTAACTAGTAGGCTGTATTGAAGTATTTACAATTATTATCCACCCCAAAAACACTTATATGCATAGATTGGTGTCTTTTATAGTTAAAGTTTATTGACGTATAGAATGTAATCGTTTAATGACAAGACAacttgttaatatatt

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0043596 nuclear replication fork cellular_component
GO:0043601 nuclear replisome cellular_component
GO:0005657 replication fork cellular_component
GO:0005658 alpha DNA polymerase cellular_component
GO:0030894 replisome cellular_component

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049864 lncRNA upstream 382647 19665340 ~ 19677031 (+) True XLOC_025251
TCONS_00052334 lncRNA upstream 586481 19472963 ~ 19473197 (+) True XLOC_025248
TCONS_00049856 lncRNA upstream 699101 19355933 ~ 19360577 (+) True XLOC_025244
TCONS_00049852 lncRNA upstream 718637 19336525 ~ 19341041 (+) False XLOC_025242
TCONS_00049829 lncRNA upstream 1271193 18771528 ~ 18788485 (+) True XLOC_025229
TCONS_00052335 lncRNA downstream 133570 20198302 ~ 20198619 (+) True XLOC_025259
TCONS_00052638 lncRNA downstream 426470 20491202 ~ 20509513 (+) True XLOC_025261
TCONS_00049875 lncRNA downstream 848578 20913310 ~ 20915154 (+) True XLOC_025263
TCONS_00052639 lncRNA downstream 993122 21057854 ~ 21066838 (+) True XLOC_025265
TCONS_00052640 lncRNA downstream 1072363 21137095 ~ 21143371 (+) False XLOC_025266
TCONS_00049870 mRNA upstream 38082 20012891 ~ 20021596 (+) True XLOC_025256
TCONS_00049869 mRNA upstream 47871 20001608 ~ 20011807 (+) True XLOC_025255
TCONS_00049868 mRNA upstream 87904 19914332 ~ 19971774 (+) True XLOC_025254
TCONS_00049867 mRNA upstream 246152 19732173 ~ 19813526 (+) True XLOC_025253
TCONS_00049866 mRNA upstream 341744 19687217 ~ 19717934 (+) True XLOC_025252
TCONS_00049872 mRNA downstream 92224 20156956 ~ 20231781 (+) True XLOC_025258
TCONS_00049873 mRNA downstream 340180 20404912 ~ 20461702 (+) True XLOC_025260
TCONS_00049878 mRNA downstream 1125034 21189766 ~ 21198744 (+) False XLOC_025267
TCONS_00049880 mRNA downstream 1136031 21200763 ~ 21218133 (+) True XLOC_025268
TCONS_00049881 mRNA downstream 1161018 21225750 ~ 21230668 (+) True XLOC_025269
TCONS_00049853 other upstream 704740 19349438 ~ 19354938 (+) True XLOC_025242
TCONS_00049854 other upstream 709861 19349719 ~ 19349817 (+) True XLOC_025243
TCONS_00049850 other upstream 746571 19312991 ~ 19313107 (+) True XLOC_025241
TCONS_00049840 other upstream 1092233 18936006 ~ 18967445 (+) False XLOC_025236
TCONS_00049874 other downstream 615191 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049876 other downstream 960421 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049877 other downstream 960421 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049893 other downstream 1994581 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049913 other downstream 2504255 22568987 ~ 22569106 (+) True XLOC_025283

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000034_03887718_03890074.mRNA True 1482 mRNA 0.47 3 CI01000034 3887165 ~ 3890409 (+)
mexican tetra (Astyanax mexicanus) TU408028 True 2154 lncRNA 0.46 3 NW_019172828.1 880196 ~ 895088 (-)