XLOC_025254 (vat1)


Basic Information

Item Value
gene id XLOC_025254
gene name vat1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 19914332 ~ 19971774 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049868
CACGCCTCGCCTCGTTTTTTCTCAATAGTTGTCAGAGCCTCGGGTCACTCACTAGTCGTCGTGAGGCATCTTCCActccctttctttctctctctctgtctccctgTCCTCCACCTTCTCAAGTCTCCAGCATCCCAGTTTTGCAAAGGCTGAGAAAACCGTGGACCGCGCAGCAGCTCGTGTATTCTGAGGTTGTTTGAGTAGCCGCATCTGAGTGAGGCAGGAAAACAAACGCAAGTCTTTTCTCTTCAAAAGTTCTCCTCCACTCAAACTCCGACCATGTCCGGCGAAGACGCACCTGCTCAGCAGCAAAACGCCGAGGAGCAGAAGCAGCAAGAGACCAAGACGCCCGCCGAGTCCCCAAAAACCGAGAGCAAACCTGACCCACCGCCCACCAGCGCGTCCACCGAGGCCGCCGCCACTGCTGCTGCCGCCGCCGACACCCCGGCGCCCGCCGCCGAGAAAGCCCCAGAGGAGGACACATTCACCTACCGGGCGCTGGTGCTCACCGGCTATGGCGGGTACGATAAGGTGAAGCTCCAGGTGAAGAAGGGGAAACCTGCTCTCAAGAGCGGCGAGGTGATGGTGCGCGTGAAAATGTGCGGGCTGAACTTCGCCGATCTGATGGCGAGACAGGGACTGTACGACCGGCTGCCGTCCCCGCCGGTTACCCCGGGCATGGAGTGCTCGGGCGTCATCGAGGCTGTCGGTGAAGAAGTGACTGacagaaaaGTGGGTGATAAGGTTCTGGTTCTGAACCGGAGCGGGATGTGGCAGGAAGTAGTAGTGGTGGCGAGCACACACACCTTCCTGATGCCCGAGGGCATGAGCTTTGAGGAGGCGGCAGCACTTCCTGTCAATTACATCACCGCCTACATGATGCTTTTCGACTTTGGGCACCTGCGTCCAAACCAGAGTGTCCTCGTCCATATGGCCGCAGGTGGAGTGGGCATCGCAGCCACTCAGCTGTGTAAAACGGTGAATGATGTCACAGTGTTCGGCACCGCCTCCGCCAGCAAGCATGAGGTCATCAGTCAGGGTGGAGTCACTCACCCTATCGACTACAGGACGCGCGATTACGTGGAGGAGGTCCGCAAAATAAGCCCTAAAGgCTTGGATATTGTTTTGGATCCTCTGGGAGGCTCTGACACCCATAAAGGCTACAACCTGCTCAAACCAATGGGAAAGCTCATCAGCTACGGTGCCGCTAACATGTTGGCGGGCCAGAAGAAGAACCTGTTTGCAGTGGCCAAGACCTGGTACCAGCAGTTCTCCGTTCACACCCTGAGCCTGATCCAAGGGAACCGCTCGGTGTGTGGATTTCATCTGGGGTACCTGGACTCTGAGACCGAGCTCATCGATCAGGCCATGACGGCAGTTATGGACCTGTACAGGCAGGGCAAGGTCAAGCCCCGAATCGACTCCACCTACCACCTAGAGCAGGTTGGTGATGCCATGCGTAGGATGCAGGAGAGGAACAACATCGGCAAAATCATCCTCACCACCGAGCCCATGAAAGAAGAGGAGAAGAAAGAGGAGGCCAAGAAAGACGAGGAGAAGAAAGACGACAAGAAGAAGGACGACAAGAAAAAGGACGACAAGAAGAAGGAAGACAAGAAGAAGGACGAGGCCAAGAAGGAGGAGAAAAAGGATGAGAAGAAGAAGGAAGAGGCCAAGAAGGACGACAAGAAAGCGGAAGAAAAGAAGgaagaagtcaagaaagaggaGAACTGAGTGGAGAGAAACATTGTGGATTTGCTTTTTGTCTGTGTCAGCGGGTTGGGAGTCgtctgagtgtgtgtatgtgtgcgtgtgtgtttctgtgtgtgtgtttatggaggGGTGTATAGTGTAATTAGCTTAACCCCAGGTGATTCCTGACATTAGATCTGCATTTGTCACTCAACACAATTCACACTCCACTTAcgttcacacacatgcatacacacacactatacagcaAGGGAACACACCACTTGTTCTTGTTCTGTTGTAACCCGGTAGTATTTATTCCCAGTTCTGCTGCGGCCTTTCTAACTCTTTCGTATGACTGCACGCCACTGAGGTGTGTTAGGGCAGTATTATCCTTTTTATAAGTATCACCGCAGTGTTTACTCTTGAATTATATAACAAAGTAACCGTATTCTGCACACTTTAAGTTCATATCCTCTAACCTTATTCCTGCCAAACTAATGCACTATAACAAGAAAAGTAATTGTATTCCACTGAAGTCTTTGTTATCTTTGTAGACGCAAACCAAAAAGCACCTCATTCGCTCTCTACACCCCTCCGTGTGTTTGCGTATCTGCTGTGAAGACTGGGTTTCCATtccctattattatttttttgtctctgAAGTGAGTGCGCTTGTTTAATTTGCCATACGTCATCAAAAGTGATATTTTTCTGCCCACCTTGGCGCACAAAAAACAAGAGCACCCACCTACACTCCCATTGTTTGTGTTGTTTCCCTCCCATTGGACCAGACTCACTGACATGCACTCAAGCCCCGCCCCTCTACGGAGGAGTCAGGGTGGTTTCCGATTGGCTGAGAGGGACAACAAGCTTCTTTCATGCGCACACATGTGCACCAAATTCACAAACAGCCCGCCAACGCTACTAACAAGGGTGTTTTAGGCTTCAGCTGATCAATGTGCCATGTCATTAAAACGGTAAGCGCCAGGGTTTTAATGAGTCTAGCTTGGCAAGCAGGACCAATTATAGAGAACATTCTTCCAGGCTTTTTCCCATCGTTTTGCCTTCTATCAGATGTGGATGCATAAAGACAGGAGTGGCCTTTCATTCCAGAGCCTCCTCCAGGATTCCTCGGGATCCTGACGCTTTCCGCCTCTCATTCCCCGTGATGGTTTACCACGCGATCATGCTGACCTGCAGCTCACATTTAAGTCTGAATGGCTCTCTAACTCACTCTGTCCGTATCATTTTTCCTCATAGAGGTTGGCATAGCAACAGCAGCTTGGCTACTTCGGgatgacagctaggtctcaccCCCTCACAGTCCCATGCGGACCTATACAAGCACTCTCGGCTGCTTTTTTCATGAAACTACAGTGGTTTTATTTCAGCACATTGAGGAATGTGGCTACTCCCTCTACACCCTCTCTTAGACCCGTCAGTCAAACCCTCTGGCTCCTCCCCTGTCTGTCAGAGAGCAGTGATCTGCTGCCTCCACTGGTGATTTATATGCATTGCAGTGCTATCATTCAAGCATTCAAGACACCTGCTGACCACTCTCTTTCTATTCACACCGTGAGTCTGGTTCATTTCGTTGAGTGTTTTTGTGAATCAAAACCAGACCCCCTCTTTTATATGTAAGTCtgtttgagtgagtgagtgagtgtgtgtgtgtgtgtttctgtatttgaCCGTTTGTCCTCAGGTTTGTTGTCGGATTTAGATTCAAATGTTCTTTCTTTTCTGTCTCTCTACCTCCCTCATGCTACCTTTATGCTACCGTCTGGCATTTTAACCGTCTTCTCTTCTTCTCCTCCGTCAGTTTCTAACTCTTGAATATTCCGGCCCCCATCAACGGCCTGCGTTGGTTTGCTATCGTTTGCACTCAGCTTGCACTTATAGAGAATGCTGTTTCCACTCCTGATCCTCCAGTAAAGCTGGTTCCTGATCCAGGTTTTCACTCAGACCTTCCGTTTCAATACTCGTTCTCCCACCAACACACTCACTCTTTATGCGTCTCTAAAAATGTTTGAACATGCATGGAGTTGCTCACAAGGCTGCATTGTTTGATGCATGCTCCTGTTTACATAATCACTATATGAGTGCAGAAATCCGTCCAGGCCTAGAATGCTCTAGGACGGGAGTGGAACCACTGTTCTAGTCTAAAGAGTCACATACTAAATCCCGGTTCGGTTTTTAGTTCCGGATCCGAGGGGTTGAGTTTCTTGTTGTGTTCCGCTGGTTCTCTTCCTGTGTTCCTGTGGATGGTGACTCAGAGCACCAAGTAACCCTAACTAACACTTCAGTGAAAAAATATCCGTCCTCTTTGTGTTTTGgttctgttttgttctgtatgtttgtttttgtggtcTGCATTTCAGTAGATTTGAGTTCAAAAGGCTTTGCTGCAGTTCCTCTAAAATGTGATgaatcatgtgattttgttggtCCTGACCGAGTGTGCCAAACTTTTTCGTGAAGGCGTGACCTTCGCTATAACTGTGCTTACTGTtttgaagagagaaaaaaaaaattcaatgaaagatgaagaaaaaaaaaaaacctaaacgtCTGTGGTTACTGTCAAAATGACCTTGCAGTAAAAAGATCTTGAGATTCTGAA

Function

symbol description
vat1 Predicted to enable oxidoreductase activity and zinc ion binding activity. Is expressed in nervous system; neural tube; swim bladder; swim bladder bud; and trigeminal placode. Orthologous to human VAT1 (vesicle amine transport 1).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-030616-178 Predicted to enable oxidoreductase activity and zinc ion binding activity. Is expressed in nervous system; neural tube; swim bladder; swim bladder bud; and trigeminal placode. Orthologous to human VAT1 (vesicle amine transport 1).

Ensembl:

ensembl_id ENSDARG00000056481

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049868 True 4318 mRNA 0.49 6 19914332 19971774

Neighbor

gene id symbol gene type direction distance location
XLOC_025253 mrc2 coding upstream 100806 19732173 ~ 19813526 (+)
XLOC_025252 tlk2 coding upstream 196398 19685873 ~ 19717934 (+)
XLOC_025251 mettl2a coding upstream 231513 19665319 ~ 19682819 (+)
XLOC_025250 itgb3a coding upstream 264797 19621034 ~ 19649535 (+)
XLOC_025249 rprml coding upstream 303342 19609638 ~ 19610990 (+)
XLOC_025255 asb16 coding downstream 29834 20001608 ~ 20011807 (+)
XLOC_025256 tmub2 coding downstream 41117 20012891 ~ 20021596 (+)
XLOC_025257 NA coding downstream 87904 20059678 ~ 20064732 (+)
XLOC_025258 ngfra coding downstream 185182 20156956 ~ 20231781 (+)
XLOC_025259 NA coding downstream 226528 20198302 ~ 20198619 (+)
XLOC_025429 BX649540.1 misc downstream 10276965 30248739 ~ 30249036 (+)
XLOC_025248 NA non-coding upstream 441135 19472963 ~ 19473197 (+)
XLOC_025243 BX322663.1 non-coding upstream 564515 19349719 ~ 19349817 (+)
XLOC_025241 BX322663.3 non-coding upstream 601225 19312991 ~ 19313107 (+)
XLOC_025235 CU151886.1 non-coding upstream 996749 18917461 ~ 18917583 (+)
XLOC_025234 CU151886.2 non-coding upstream 1021566 18892650 ~ 18892766 (+)
XLOC_025261 NA non-coding downstream 519428 20491202 ~ 20509513 (+)
XLOC_025262 BX248239.1 non-coding downstream 708149 20679923 ~ 20680038 (+)
XLOC_025263 BX936284.1 non-coding downstream 941536 20913310 ~ 20915154 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_03946027_03949208 NA coding CI01000034 null 3945591 ~ 3949656 (+)