XLOC_025253 (mrc2)


Basic Information

Item Value
gene id XLOC_025253
gene name mrc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 19732173 ~ 19813526 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049867
ATGCATCATCAGCACCGGGAGCGCCGCTGGAGTCGCGCGTGGATCAGCGTTTGCAGATgcactttatatttatttctagTTTTGAGCCTGGAGCGGAGCGCCGTGCACTCAGcACATACAGATGGATCAGACACATTTGCGTTTTTCCACGAGGGTGCACAGGGCTGTTTGGGGGTCCGAGACCACGTGCTTCACCTGTCGTCATCCTGTAAGGGTGAAGCCCAGCTATGGAAATGGGTGACCAGGAGTCGGCTCTTCAACATCGGCTCATCCCTCTGCCTGGGCATCACTGTGGGCAACGTCAGCACATTTGGTGACAGGTCACCGCTCGGTGTGTTTCGCTGCGACTACGAGCCTCCACGGGTGCGCTGGACCTGGAGCTGCAGCAAGTTCTTGGAGACGCTTGAAACGCACTTGGCCTCTCCTAAATTACTCCTCAACAGTGGTAATGTGTCAACAACTGCAAGACCACCATCCAAGAAGCTTCTCTGGAGAGTCTATGACAATCAAGACCTATGTGCCAAGTCATACCGAGAAATCTACACCATCCGAGGAAACTCTCACGCCAGCCCATGTTATTTCCCCTTCCTATACAACGGTCAGTGGTTCCACAGCTGCACCAGTGTGGGCAGAGAAGATGGTTTTCACTGGTGTGCCACGACCCACGATTATGGAAAGGACCAGCGCTGGGGCTTCTGCCCAATAAAGAGTGCTGACTGTGAGACGTTTTGGGACATAAACTCTTTGATGGATAACTGTTACCAGTTTAACTTTCAGGCTACACTGTCTTGGAGTGAAGCGCGGACCAGCTGCCAACAGCAGGGAGCAGATCTGCTCAGCATCACCAAAGTAGAGGAACAAATCTATGTCAATGGTTTGCTCATCGGATACAGTGCCACCCTGTGGATGGGTTTGAATGATCTGGATCTGAATGGTGGCTGGCAGTGGGCTGACTCCGCCCCTCTTAAATACCTAAACTGGGAAGCAGAAATGCCAAGTTATGACGAGGAAGAAAACTGTGGTGTGATCAGCACTGATGCTCAGGGCCGCTGGCACAACAGAGACTGTTCAGTGGCTCTGCCTTACATTTGCAAGAAACGACCTAACGCCACACTCGACCCCTTCACCACAGACTCGTGGGCAGATGATGGCCATTACCAGTGTGACGTGGGCTGGCAGAACTTCCAGACGGGCTGCTATTGGCTGAACTCAGACAAACTGGACTGGAGATCAGCTGACAGAACATGTCAGAAGATGGAGGCTAATCTTGTTAGCATACACACCCTGCCAGAGCTCGAGTACATCACGAAACATATGAAGAAAGATATAGAAGAGTTGTGGATTGGTCTTCATGATACAGCAATGCAGATGAACTTTGAATGGACGGATCGCACTCCAGTCATCTTCACTTACTGGCACCCGTTTGAACCCAACAATTTTCGAGAGGTTAATGAGGACTGTGTCACCATCTGGGGCCCTgAGGGCCGCTGGAACGATAGCCCATGTAATTACTCTCTGCCCTCCATCTGTAAGAAACCGGCCCAGAAAGCTGACGACCGGATACAAGACCACGGCTGCAAACGGGGATGGAAATGGCACAGTCCCTCCTGTTTCAAAGTTGGAGAGGAATCCCTAACTTTTAAAGATGCAAAAGAAATGTGCATTAGCAACAATGCCACTCTCGCCATAATTAATAACAGGTTTGAGCAGGCGTTTGTGAGCAGTCTGGTGTTTGGACGAACTGATGATCAGTTTTGGCTTGGCCTTAATAACGAAAACAGCTCCGGCACATTTGGCTGGATAACCGGAGATGAGCTCACATACACCAACTGGAACAGAGACCAGCCAGCGCAGGTAAAGGGTGGCTGTGTGGTGATGGTGGCGGGTCAGGCTATGGGCCTGTGGGAGGTGAAGGACTGTGCCAGCATTCGCTCCAAATACATCTGCAAACAGAATCAGGGCTCATCTTCCATTCCCAGTCCTCCTGCGCCTGTGCCTACACCCTCCCTGACCGGATCATGTCCTTCAGGGTGGAAAAGCAGCAACTCGTTCAGGCACTGCTACAAGGTTTTTCATGCAGGTGCACTGGAAAAGAGGCTGACGTGGATTCAAGCACACAAGTTTTGCCAGAAACACGGAGCTCAGCTGGCCAGTTTCAGCACACCGGAGGAGGAGGCCTTCGTCTTCCAGATCCTCCACGAGGCCTTTGGGGAGGCGGAGGAACATGAGCAGCACTGGCTGTGGATCGGAATCTCTCGCCGCAATAGTGACAGTTGGACATGGAGTGACGGATCAGCTGTGACCTATCAGAACTTTGGACGGGGGAATTATGGGTCTGCTGAGTGCGGAGCTGCTAACATGGCCGACACTAACTGGCTGGTGTCCCACTGTGAATCTGAGCTAGACTGGATCTGCAAAATACCCAAAGGGAAAGTAGAAGAGGAACCTGAGAGCCACGAAGACACTGGTTTAGAGTGGGTTGACTTTGAAGAGGCTCAGTATAAAATGTTTGAGCATCGCTCCACGTGGGACCAGGCTCAGAGGATCTGCTCCTGGTTCGAGGCCTCTCTGGTCTCCATGCACAGCCCAAAGGAGAATCAATTTTTGGTTAGCACTTTACGCAAGatgtCCCGTCAAGAAAATGACCTGTGGTGGGTCGGGTTACACACATTTAAGAACGATGGGAGATTCCGGTGGTCTGATCATTCAGTGCTCAACTATGTGTCTTGGGGGCCAGGACAGCCTCGACCAATCAGCAAAGAGACAAAATGTGTCCAAATCTCTGCCTCAAAAGGTGACTGGTCAGACCAGAGGTGTCATGTGGATCTTCCGTATGTGTGTAAGAGAGTAAATGTGACCGGCACAATCCCTCCCACACCCTCCCTGCCTCTCACACCCGCTGGCTGCCCTCAGGGCTGGACTCCTTTTTTACACAAGTGCTATAAGGTGTTTGGAGAGGAGCTGTCGAGTCGCAGCACTTGGGACGCTGCTTCTAAGACGTGTCTGACACAAAGAGCCACACTGGTGACGGTGCCAAACCACAGAGTTCAGGCGTTCCTCGTGACTCTGCTTCCCAACAGCAGTTTTCATTTGTGGGTCGGACTCACTTCAGAATCACAGGCTCAGTTCAAGTGGTTTGAACCTGGTTTTCTCAGCTACACTAACTGGGCCCCTGGAGAACCAGtggacaacaaacaaatgaaaagccCGGGTAACTGTGTTTTGCTTCTGCATGGTAGTCCTCAGCGGATTACAGGCATGTGGGCGTCTCGCAGGTGTGATGCAGAGAAACATGGCTTCATCTGCATGAAGGATAAAGACCCTGCCCTGTCACCTGGCGTGGATCGTCTTCCCCCATCATTAGATGGTCCTTTAGAGTTTGATGGTGTTCAGTACCGGATCCTGCAGAAGCGTCTGGATTGGCATTCAGCTCTGCAAGTGTGTGAATCAGTCAACGGGACACTGGCTGCTGTACGGGAACCTCGGCAGAATGCTTACCTCACCCTTCTCCTCAGCACTCTCCGGAAACCTGCCTGGATTGCTCTACACAATGAAGGGGGGCGGAGCTACTCGTGGTTGGGTGAAGAGGAGATCACATTCAGTGACTGGCGGGACGGAGAGCCCAATCAGATGTACGGTTGTGGTCACATGATCACTGAGGGCCAGTGGACTGTGGCTGCTTGCAAttcaaaattaaatgcagccatttgtGAAATGAACACTGAGACGACAAAAGAGCATCGATGGATGTATCCTGGTGTTTGCCCACAGCCTGTTGGTAACTGGTCCTGGATTCCTTTCAGAAATCACTGCTACTCCTTCATCCTACACGAACTACAGTTCAAGCAGGAGGCCATTCGCATGTGTAGCAAAGTTGGTGCTAAACTGTTGTCAATATTGGATGAAAACGAGAATGGGTTTGTATGGGAGCACATGCAGAGTTTTCAACATCAGGCTCACGGCGCTTGGCTAGGAATGATCTTTAACTCTAAAGAAGGCAGTCTGGAGTGGTCCAGCGGTGAAATTGTGGATTATAGTAACTGGGAGCAGCAGGATGCTAATCTGAGCATGCTATCTGCTAACAGCTGCTTCTGGGTGAAGAGCAACACGGGCCTCTGGAGGCCTGAATCCTGCAAAAACCGCACTCATGGAGTCATCTGCAAACGGCCACGAGGACCCACAGCAGAGCCTGTGAATAGCTCTGAAGTAGACCATCTGCACGTGTTGATTCAGGTCCTGGTGGCGGTGCTTGTTCTGATGGCTCTGGTAGTGGGCGGGGTGTACCTGTATCGTAGGCGGAGCTTCGGCTCCACAGGTGCCTTTGAGAGTGCTCGGTACAGCCGCACTAACTCCACCCCCTCTGAAGAAGCCGAAAAAAACATTCTCGTTTCAGACATGGAGTTAAACGAACAGGGTGAATAA

Function

symbol description
mrc2 Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MRC2 (mannose receptor C type 2).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090915-5 Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MRC2 (mannose receptor C type 2).

Ensembl:

ensembl_id ENSDARG00000078135

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049867 True 4422 mRNA 0.51 28 19732173 19813526

Neighbor

gene id symbol gene type direction distance location
XLOC_025252 tlk2 coding upstream 14239 19685873 ~ 19717934 (+)
XLOC_025251 mettl2a coding upstream 49354 19665319 ~ 19682819 (+)
XLOC_025250 itgb3a coding upstream 82638 19621034 ~ 19649535 (+)
XLOC_025249 rprml coding upstream 121183 19609638 ~ 19610990 (+)
XLOC_025247 CU571315.1 coding upstream 254700 19468777 ~ 19477473 (+)
XLOC_025254 vat1 coding downstream 100806 19914332 ~ 19971774 (+)
XLOC_025255 asb16 coding downstream 188082 20001608 ~ 20011807 (+)
XLOC_025256 tmub2 coding downstream 199365 20012891 ~ 20021596 (+)
XLOC_025257 NA coding downstream 246152 20059678 ~ 20064732 (+)
XLOC_025258 ngfra coding downstream 343430 20156956 ~ 20231781 (+)
XLOC_025429 BX649540.1 misc downstream 10435213 30248739 ~ 30249036 (+)
XLOC_025248 NA non-coding upstream 258976 19472963 ~ 19473197 (+)
XLOC_025243 BX322663.1 non-coding upstream 382356 19349719 ~ 19349817 (+)
XLOC_025241 BX322663.3 non-coding upstream 419066 19312991 ~ 19313107 (+)
XLOC_025235 CU151886.1 non-coding upstream 814590 18917461 ~ 18917583 (+)
XLOC_025234 CU151886.2 non-coding upstream 839407 18892650 ~ 18892766 (+)
XLOC_025259 NA non-coding downstream 384776 20198302 ~ 20198619 (+)
XLOC_025261 NA non-coding downstream 677676 20491202 ~ 20509513 (+)
XLOC_025262 BX248239.1 non-coding downstream 866397 20679923 ~ 20680038 (+)
XLOC_025263 BX936284.1 non-coding downstream 1099784 20913310 ~ 20915154 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_04019323_04045212 MRC2 coding CI01000034 null 4019240 ~ 4045212 (-)