XLOC_025249 (rprml)


Basic Information

Item Value
gene id XLOC_025249
gene name rprml
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 19609638 ~ 19610990 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049860
AAAAAGACTTTCACTGAGAGCCAAGTGTGAAAGAGGGCAACTAAACGGGACAGTTTTATCAACTTATCAAGTGAACCTGTGGTGTGAACCGTCACAGATGATTTTAATAGATACTTTAATTACTTTTTCTCTTCATGAAAGTTGCTCGACTCAACAGGCAGTTGCAGAAAGTGAGCTGGTGCCATTAAAATCTACTGCGTTCAGCTACGTCTCTGCTCAGGATGAACGGAACGTTTTTTAACCACACGGTTTTTACGCAAGGCGTTCTGCTGAATCGCAGTCAGGAGCTCGCGGGGACGCTGGTCGACTGCTGCACAGGGAACGGGAGCGAGGTGACCGCAAACGATGGCGGAGGCTCTTTGGTTCTCGCCCAAGACGAGCGCAAACTGTTCGTTACGCGCGTGGTGCAGATCGCGGTGCTCTGCGTGCTTTCGCTCACGGTGATGTTCGGGATCTTCTTTCTCGGCTGCAACCTCATGATCAAGTCCGAAAGTATGATTAACTTCCTGGTTAAGGACCGGAGATCATCCAAAGACGTCGAGGCGGTGATGATAGGACTGAGTTAGCCGCGGGTCACACCTGTTAATAACCGGGCGGAATAAGGCGCGAGTGGCACCTGTTTTTCCACAGGCTGGGATGCAGGAAAATATGCAACTTACACTTTCACTCCCCTTCTGTTCTGGGAAGACAAATCCGATGTGGACGAGAGGTTCCTAAAGTAAATAAGACAGAGGAAAAAGTTGCACGTTTACGAAACGAGAATGTATTCGTCCATGTTTACGTAGCTTTTTGTATTTGAGGTAgttttttcttgtgcttttttacagtgcagtgtttACACGTTTTTACCTTTTACCTGATAAAAACGCAAAgtatgtatttattgtattttgtttgtaaaaaaaaaaaaaagtgcaaatcaTGACTCAGATTCAGgatttttgtctcgcgacttgtAGCTAGTTTGGCGAAACAATTTTAGATTTATCAAAAAGTTTtaaccacattttaaaaaatgtatttgttcacCTAAGTTTTATCGACTCTCCTGCACAATCATAATGTCATATATAATGGAAAGCGCATGAGCAATTTGGTGTTAGCGAGCTAATTTCTGGCtctaaatttttttaatcaaaacgcAAATCATTTTCTCAGTTTATATGCTTTATAGGTGCAACATTCATCACCGTAGAAAGCCCAAAGTGTATCATCGATACACTCTTAAAAACAAAGTTGAACCAAAGAGGTTTTCACAGTGATGCTATACTAAAATGACAATGAAAagatgaaaaattattttaaaaacacttttttttttcttctaatgattgttaattaaaaaaaaaaaaa

Function

symbol description
rprml Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in blood vessel; brain; intestine; notochord; and trigeminal ganglion. Orthologous to human RPRML (reprimo like).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070615-20 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in blood vessel; brain; intestine; notochord; and trigeminal ganglion. Orthologous to human RPRML (reprimo like).

Ensembl:

ensembl_id ENSDARG00000056768

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049860 True 1353 mRNA 0.40 1 19609638 19610990

Neighbor

gene id symbol gene type direction distance location
XLOC_025247 CU571315.1 coding upstream 132165 19468777 ~ 19477473 (+)
XLOC_025248 NA coding upstream 136441 19472963 ~ 19473197 (+)
XLOC_025246 pde6ga coding upstream 143623 19460991 ~ 19466015 (+)
XLOC_025245 zgc:123297 coding upstream 151865 19446997 ~ 19457773 (+)
XLOC_025244 spc24 coding upstream 245657 19355869 ~ 19363981 (+)
XLOC_025250 itgb3a coding downstream 10044 19621034 ~ 19649535 (+)
XLOC_025251 mettl2a coding downstream 54329 19665319 ~ 19682819 (+)
XLOC_025252 tlk2 coding downstream 74883 19685873 ~ 19717934 (+)
XLOC_025253 mrc2 coding downstream 121183 19732173 ~ 19813526 (+)
XLOC_025254 vat1 coding downstream 303342 19914332 ~ 19971774 (+)
XLOC_025429 BX649540.1 misc downstream 10637749 30248739 ~ 30249036 (+)
XLOC_025243 BX322663.1 non-coding upstream 259821 19349719 ~ 19349817 (+)
XLOC_025241 BX322663.3 non-coding upstream 296531 19312991 ~ 19313107 (+)
XLOC_025235 CU151886.1 non-coding upstream 692055 18917461 ~ 18917583 (+)
XLOC_025234 CU151886.2 non-coding upstream 716872 18892650 ~ 18892766 (+)
XLOC_025257 NA non-coding downstream 448688 20059678 ~ 20064732 (+)
XLOC_025259 NA non-coding downstream 587312 20198302 ~ 20198619 (+)
XLOC_025261 NA non-coding downstream 880212 20491202 ~ 20509513 (+)
XLOC_025262 BX248239.1 non-coding downstream 1068933 20679923 ~ 20680038 (+)
XLOC_025263 BX936284.1 non-coding downstream 1302320 20913310 ~ 20915154 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G172384 NA non-coding CI01000034 null 4125119 ~ 4126846 (-)