RNA id: TCONS_00049860


Basic Information

Item Value
RNA id TCONS_00049860
length 1353
RNA type mRNA
GC content 0.40
exon number 1
gene id XLOC_025249
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 19609638 ~ 19610990 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAAGACTTTCACTGAGAGCCAAGTGTGAAAGAGGGCAACTAAACGGGACAGTTTTATCAACTTATCAAGTGAACCTGTGGTGTGAACCGTCACAGATGATTTTAATAGATACTTTAATTACTTTTTCTCTTCATGAAAGTTGCTCGACTCAACAGGCAGTTGCAGAAAGTGAGCTGGTGCCATTAAAATCTACTGCGTTCAGCTACGTCTCTGCTCAGGATGAACGGAACGTTTTTTAACCACACGGTTTTTACGCAAGGCGTTCTGCTGAATCGCAGTCAGGAGCTCGCGGGGACGCTGGTCGACTGCTGCACAGGGAACGGGAGCGAGGTGACCGCAAACGATGGCGGAGGCTCTTTGGTTCTCGCCCAAGACGAGCGCAAACTGTTCGTTACGCGCGTGGTGCAGATCGCGGTGCTCTGCGTGCTTTCGCTCACGGTGATGTTCGGGATCTTCTTTCTCGGCTGCAACCTCATGATCAAGTCCGAAAGTATGATTAACTTCCTGGTTAAGGACCGGAGATCATCCAAAGACGTCGAGGCGGTGATGATAGGACTGAGTTAGCCGCGGGTCACACCTGTTAATAACCGGGCGGAATAAGGCGCGAGTGGCACCTGTTTTTCCACAGGCTGGGATGCAGGAAAATATGCAACTTACACTTTCACTCCCCTTCTGTTCTGGGAAGACAAATCCGATGTGGACGAGAGGTTCCTAAAGTAAATAAGACAGAGGAAAAAGTTGCACGTTTACGAAACGAGAATGTATTCGTCCATGTTTACGTAGCTTTTTGTATTTGAGGTAgttttttcttgtgcttttttacagtgcagtgtttACACGTTTTTACCTTTTACCTGATAAAAACGCAAAgtatgtatttattgtattttgtttgtaaaaaaaaaaaaaagtgcaaatcaTGACTCAGATTCAGgatttttgtctcgcgacttgtAGCTAGTTTGGCGAAACAATTTTAGATTTATCAAAAAGTTTtaaccacattttaaaaaatgtatttgttcacCTAAGTTTTATCGACTCTCCTGCACAATCATAATGTCATATATAATGGAAAGCGCATGAGCAATTTGGTGTTAGCGAGCTAATTTCTGGCtctaaatttttttaatcaaaacgcAAATCATTTTCTCAGTTTATATGCTTTATAGGTGCAACATTCATCACCGTAGAAAGCCCAAAGTGTATCATCGATACACTCTTAAAAACAAAGTTGAACCAAAGAGGTTTTCACAGTGATGCTATACTAAAATGACAATGAAAagatgaaaaattattttaaaaacacttttttttttcttctaatgattgttaattaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070615-20 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in blood vessel; brain; intestine; notochord; and trigeminal ganglion. Orthologous to human RPRML (reprimo like).

Ensembl:

ensembl_id ENSDART00000079319

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052334 lncRNA upstream 136441 19472963 ~ 19473197 (+) True XLOC_025248
TCONS_00049856 lncRNA upstream 249061 19355933 ~ 19360577 (+) True XLOC_025244
TCONS_00049852 lncRNA upstream 268597 19336525 ~ 19341041 (+) False XLOC_025242
TCONS_00049829 lncRNA upstream 821153 18771528 ~ 18788485 (+) True XLOC_025229
TCONS_00052636 lncRNA upstream 937347 18670824 ~ 18672291 (+) True XLOC_025227
TCONS_00049864 lncRNA downstream 54350 19665340 ~ 19677031 (+) True XLOC_025251
TCONS_00052637 lncRNA downstream 448688 20059678 ~ 20064732 (+) False XLOC_025257
TCONS_00049871 lncRNA downstream 452519 20063509 ~ 20064130 (+) True XLOC_025257
TCONS_00052335 lncRNA downstream 587312 20198302 ~ 20198619 (+) True XLOC_025259
TCONS_00052638 lncRNA downstream 880212 20491202 ~ 20509513 (+) True XLOC_025261
TCONS_00049859 mRNA upstream 132165 19468777 ~ 19477473 (+) True XLOC_025247
TCONS_00049858 mRNA upstream 143623 19460991 ~ 19466015 (+) True XLOC_025246
TCONS_00049857 mRNA upstream 151865 19446997 ~ 19457773 (+) True XLOC_025245
TCONS_00049855 mRNA upstream 245657 19355869 ~ 19363981 (+) False XLOC_025244
TCONS_00049851 mRNA upstream 254438 19336286 ~ 19355200 (+) False XLOC_025242
TCONS_00049861 mRNA downstream 10044 19621034 ~ 19649535 (+) True XLOC_025250
TCONS_00049862 mRNA downstream 54329 19665319 ~ 19682819 (+) False XLOC_025251
TCONS_00049863 mRNA downstream 54348 19665338 ~ 19682811 (+) False XLOC_025251
TCONS_00049865 mRNA downstream 74883 19685873 ~ 19717932 (+) False XLOC_025252
TCONS_00049866 mRNA downstream 76227 19687217 ~ 19717934 (+) True XLOC_025252
TCONS_00049853 other upstream 254700 19349438 ~ 19354938 (+) True XLOC_025242
TCONS_00049854 other upstream 259821 19349719 ~ 19349817 (+) True XLOC_025243
TCONS_00049850 other upstream 296531 19312991 ~ 19313107 (+) True XLOC_025241
TCONS_00049840 other upstream 642193 18936006 ~ 18967445 (+) False XLOC_025236
TCONS_00049874 other downstream 1068933 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049876 other downstream 1414163 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049877 other downstream 1414163 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049893 other downstream 2448323 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049913 other downstream 2957997 22568987 ~ 22569106 (+) True XLOC_025283

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU195835 True 1728 lncRNA 0.44 1 CI01000034 4125119 ~ 4126846 (-)