RNA id: TCONS_00049862


Basic Information

Item Value
RNA id TCONS_00049862
length 1387
RNA type mRNA
GC content 0.47
exon number 9
gene id XLOC_025251
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 19665319 ~ 19682819 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACGTCATGCAGAACAGCCATGTGCATCCGGTTCGCGTGTCCATCATGGCTGCTCCTGCTGTTGCTGCTGATTCTCCAGTCATAGAAAATATGCCAGAAACTGCCGGTGGGGCCACGGAAAATTCAGCTGAGGCCCAGAAACGACCGCAGTTTGGCACTCGCTTCCTCACAGACCCGCGACAGGTGTTTCAGCACAACGCGTGGGATAATGTGGAGTGGTCAGCAGAACAGGAGGAGGCTGCCTTGAAAAAAGTGCAAGAAAACAGTCAACCTCTCCCAGCAGAAAAACAAGAGGAGTTTGACGACAGGGCCAATGAATACTGGAATGACTTTTACACCATTCACGAGAACCGCTTCTTCAAGGATCGTCACTGGCTCTTTACAGAGTTCCCCGAGCTTGCACCTCAGCAAAAGCATTTACGGGGTGCTGAGGAGAAGGAAAGCCTGGAACACATGTTAAATGGTGAAGATGTTTCCTCGAATCACACACATGATGAATTTCCTGGAGCCTCTGCATCCTATCGCATCCTGGAGGTGGGCTGTGGAGTAGGCAATACAGTCTTTCCCATCTTAAAAACCAACAATGACCCAGGACTCTTTGTTTACTGTTGTGATTTCTCCAGCACAGCTGTAGACCTCGTCAAATCAAATCCTGAGTATGACCCATCACGCTGTCATGCATTTGTCCATGATATGAGTGATGAATCTGGAGAGTATCCCATGCCAGATCACAGTCTGGACGTCATCGTCCTCATATTTGTGCTGTCCGCTCTGCACCCTGAGAAGATGCAAAAGTCTATCAATAGATTGGGACGATTGCTGAAACCCGGAGGAGTGTTGTTATTGAGAGACTATGGCCGATATGACATGGCACAGCTACGTTTCAAAAAAGGGAGGTGCTTGTCTGAAAACTTCTATGTTCGAGGTGATGGAACCCGCGTCTACTTTTTCACACAAGATGAGCTGCATGATCTGTTCTCCAGTGCGGGTCTGGAGAAGCTGCAGAATTTGGTGGATCGACGATTGCAGGTGAACAGAGGAAAGCAGCTTACAATGTACAGAGTCTGGGTTCAGTGCAAGTATCGCAAGGTCCTGGCACCCACTTAACATCAAAACCGCTTGTTTGGAGAGAAGGAGAACATCTGGATTGCTGTACCATGACAAATCTGTGACGTAGTTTTACAGATGATGGACAGACTGCAGGAGCTTCAAGGTTACGGTGCTTATGTTTGCTCAAAGTGGTATCTGATGTATCCTGCTTGGGAATAAGAGGACAAGAGTTCCCATGATGCACCTGAGGGCTTTAAACTGTTTGTCCATCACATTGAGTGATGTTTTTTTAAGGACAATTTTTTAGTAGGAATAAACCAGATGAAATGAAGGCAAA

Function

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0032259 methylation biological_process
GO:0016427 tRNA (cytosine) methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0052735 tRNA (cytosine-3-)-methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-462 Predicted to enable tRNA (cytosine-3-)-methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within methylation and tRNA processing. Orthologous to several human genes including METTL2A (methyltransferase 2A, methylcytidine).

Ensembl:

ensembl_id ENSDART00000007857

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052334 lncRNA upstream 192122 19472963 ~ 19473197 (+) True XLOC_025248
TCONS_00049856 lncRNA upstream 304742 19355933 ~ 19360577 (+) True XLOC_025244
TCONS_00049852 lncRNA upstream 324278 19336525 ~ 19341041 (+) False XLOC_025242
TCONS_00049829 lncRNA upstream 876834 18771528 ~ 18788485 (+) True XLOC_025229
TCONS_00052636 lncRNA upstream 993028 18670824 ~ 18672291 (+) True XLOC_025227
TCONS_00052637 lncRNA downstream 376859 20059678 ~ 20064732 (+) False XLOC_025257
TCONS_00049871 lncRNA downstream 380690 20063509 ~ 20064130 (+) True XLOC_025257
TCONS_00052335 lncRNA downstream 515483 20198302 ~ 20198619 (+) True XLOC_025259
TCONS_00052638 lncRNA downstream 808383 20491202 ~ 20509513 (+) True XLOC_025261
TCONS_00049875 lncRNA downstream 1230491 20913310 ~ 20915154 (+) True XLOC_025263
TCONS_00049861 mRNA upstream 15784 19621034 ~ 19649535 (+) True XLOC_025250
TCONS_00049860 mRNA upstream 54329 19609638 ~ 19610990 (+) True XLOC_025249
TCONS_00049859 mRNA upstream 187846 19468777 ~ 19477473 (+) True XLOC_025247
TCONS_00049858 mRNA upstream 199304 19460991 ~ 19466015 (+) True XLOC_025246
TCONS_00049857 mRNA upstream 207546 19446997 ~ 19457773 (+) True XLOC_025245
TCONS_00049865 mRNA downstream 3054 19685873 ~ 19717932 (+) False XLOC_025252
TCONS_00049866 mRNA downstream 4398 19687217 ~ 19717934 (+) True XLOC_025252
TCONS_00049867 mRNA downstream 49354 19732173 ~ 19813526 (+) True XLOC_025253
TCONS_00049868 mRNA downstream 231513 19914332 ~ 19971774 (+) True XLOC_025254
TCONS_00049869 mRNA downstream 318789 20001608 ~ 20011807 (+) True XLOC_025255
TCONS_00049853 other upstream 310381 19349438 ~ 19354938 (+) True XLOC_025242
TCONS_00049854 other upstream 315502 19349719 ~ 19349817 (+) True XLOC_025243
TCONS_00049850 other upstream 352212 19312991 ~ 19313107 (+) True XLOC_025241
TCONS_00049840 other upstream 697874 18936006 ~ 18967445 (+) False XLOC_025236
TCONS_00049874 other downstream 997104 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049876 other downstream 1342334 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049877 other downstream 1342334 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049893 other downstream 2376494 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049913 other downstream 2886168 22568987 ~ 22569106 (+) True XLOC_025283

Expression Profile

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