RNA id: TCONS_00049868


Basic Information

Item Value
RNA id TCONS_00049868
length 4318
RNA type mRNA
GC content 0.49
exon number 6
gene id XLOC_025254
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 19914332 ~ 19971774 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGCCTCGCCTCGTTTTTTCTCAATAGTTGTCAGAGCCTCGGGTCACTCACTAGTCGTCGTGAGGCATCTTCCActccctttctttctctctctctgtctccctgTCCTCCACCTTCTCAAGTCTCCAGCATCCCAGTTTTGCAAAGGCTGAGAAAACCGTGGACCGCGCAGCAGCTCGTGTATTCTGAGGTTGTTTGAGTAGCCGCATCTGAGTGAGGCAGGAAAACAAACGCAAGTCTTTTCTCTTCAAAAGTTCTCCTCCACTCAAACTCCGACCATGTCCGGCGAAGACGCACCTGCTCAGCAGCAAAACGCCGAGGAGCAGAAGCAGCAAGAGACCAAGACGCCCGCCGAGTCCCCAAAAACCGAGAGCAAACCTGACCCACCGCCCACCAGCGCGTCCACCGAGGCCGCCGCCACTGCTGCTGCCGCCGCCGACACCCCGGCGCCCGCCGCCGAGAAAGCCCCAGAGGAGGACACATTCACCTACCGGGCGCTGGTGCTCACCGGCTATGGCGGGTACGATAAGGTGAAGCTCCAGGTGAAGAAGGGGAAACCTGCTCTCAAGAGCGGCGAGGTGATGGTGCGCGTGAAAATGTGCGGGCTGAACTTCGCCGATCTGATGGCGAGACAGGGACTGTACGACCGGCTGCCGTCCCCGCCGGTTACCCCGGGCATGGAGTGCTCGGGCGTCATCGAGGCTGTCGGTGAAGAAGTGACTGacagaaaaGTGGGTGATAAGGTTCTGGTTCTGAACCGGAGCGGGATGTGGCAGGAAGTAGTAGTGGTGGCGAGCACACACACCTTCCTGATGCCCGAGGGCATGAGCTTTGAGGAGGCGGCAGCACTTCCTGTCAATTACATCACCGCCTACATGATGCTTTTCGACTTTGGGCACCTGCGTCCAAACCAGAGTGTCCTCGTCCATATGGCCGCAGGTGGAGTGGGCATCGCAGCCACTCAGCTGTGTAAAACGGTGAATGATGTCACAGTGTTCGGCACCGCCTCCGCCAGCAAGCATGAGGTCATCAGTCAGGGTGGAGTCACTCACCCTATCGACTACAGGACGCGCGATTACGTGGAGGAGGTCCGCAAAATAAGCCCTAAAGgCTTGGATATTGTTTTGGATCCTCTGGGAGGCTCTGACACCCATAAAGGCTACAACCTGCTCAAACCAATGGGAAAGCTCATCAGCTACGGTGCCGCTAACATGTTGGCGGGCCAGAAGAAGAACCTGTTTGCAGTGGCCAAGACCTGGTACCAGCAGTTCTCCGTTCACACCCTGAGCCTGATCCAAGGGAACCGCTCGGTGTGTGGATTTCATCTGGGGTACCTGGACTCTGAGACCGAGCTCATCGATCAGGCCATGACGGCAGTTATGGACCTGTACAGGCAGGGCAAGGTCAAGCCCCGAATCGACTCCACCTACCACCTAGAGCAGGTTGGTGATGCCATGCGTAGGATGCAGGAGAGGAACAACATCGGCAAAATCATCCTCACCACCGAGCCCATGAAAGAAGAGGAGAAGAAAGAGGAGGCCAAGAAAGACGAGGAGAAGAAAGACGACAAGAAGAAGGACGACAAGAAAAAGGACGACAAGAAGAAGGAAGACAAGAAGAAGGACGAGGCCAAGAAGGAGGAGAAAAAGGATGAGAAGAAGAAGGAAGAGGCCAAGAAGGACGACAAGAAAGCGGAAGAAAAGAAGgaagaagtcaagaaagaggaGAACTGAGTGGAGAGAAACATTGTGGATTTGCTTTTTGTCTGTGTCAGCGGGTTGGGAGTCgtctgagtgtgtgtatgtgtgcgtgtgtgtttctgtgtgtgtgtttatggaggGGTGTATAGTGTAATTAGCTTAACCCCAGGTGATTCCTGACATTAGATCTGCATTTGTCACTCAACACAATTCACACTCCACTTAcgttcacacacatgcatacacacacactatacagcaAGGGAACACACCACTTGTTCTTGTTCTGTTGTAACCCGGTAGTATTTATTCCCAGTTCTGCTGCGGCCTTTCTAACTCTTTCGTATGACTGCACGCCACTGAGGTGTGTTAGGGCAGTATTATCCTTTTTATAAGTATCACCGCAGTGTTTACTCTTGAATTATATAACAAAGTAACCGTATTCTGCACACTTTAAGTTCATATCCTCTAACCTTATTCCTGCCAAACTAATGCACTATAACAAGAAAAGTAATTGTATTCCACTGAAGTCTTTGTTATCTTTGTAGACGCAAACCAAAAAGCACCTCATTCGCTCTCTACACCCCTCCGTGTGTTTGCGTATCTGCTGTGAAGACTGGGTTTCCATtccctattattatttttttgtctctgAAGTGAGTGCGCTTGTTTAATTTGCCATACGTCATCAAAAGTGATATTTTTCTGCCCACCTTGGCGCACAAAAAACAAGAGCACCCACCTACACTCCCATTGTTTGTGTTGTTTCCCTCCCATTGGACCAGACTCACTGACATGCACTCAAGCCCCGCCCCTCTACGGAGGAGTCAGGGTGGTTTCCGATTGGCTGAGAGGGACAACAAGCTTCTTTCATGCGCACACATGTGCACCAAATTCACAAACAGCCCGCCAACGCTACTAACAAGGGTGTTTTAGGCTTCAGCTGATCAATGTGCCATGTCATTAAAACGGTAAGCGCCAGGGTTTTAATGAGTCTAGCTTGGCAAGCAGGACCAATTATAGAGAACATTCTTCCAGGCTTTTTCCCATCGTTTTGCCTTCTATCAGATGTGGATGCATAAAGACAGGAGTGGCCTTTCATTCCAGAGCCTCCTCCAGGATTCCTCGGGATCCTGACGCTTTCCGCCTCTCATTCCCCGTGATGGTTTACCACGCGATCATGCTGACCTGCAGCTCACATTTAAGTCTGAATGGCTCTCTAACTCACTCTGTCCGTATCATTTTTCCTCATAGAGGTTGGCATAGCAACAGCAGCTTGGCTACTTCGGgatgacagctaggtctcaccCCCTCACAGTCCCATGCGGACCTATACAAGCACTCTCGGCTGCTTTTTTCATGAAACTACAGTGGTTTTATTTCAGCACATTGAGGAATGTGGCTACTCCCTCTACACCCTCTCTTAGACCCGTCAGTCAAACCCTCTGGCTCCTCCCCTGTCTGTCAGAGAGCAGTGATCTGCTGCCTCCACTGGTGATTTATATGCATTGCAGTGCTATCATTCAAGCATTCAAGACACCTGCTGACCACTCTCTTTCTATTCACACCGTGAGTCTGGTTCATTTCGTTGAGTGTTTTTGTGAATCAAAACCAGACCCCCTCTTTTATATGTAAGTCtgtttgagtgagtgagtgagtgtgtgtgtgtgtgtttctgtatttgaCCGTTTGTCCTCAGGTTTGTTGTCGGATTTAGATTCAAATGTTCTTTCTTTTCTGTCTCTCTACCTCCCTCATGCTACCTTTATGCTACCGTCTGGCATTTTAACCGTCTTCTCTTCTTCTCCTCCGTCAGTTTCTAACTCTTGAATATTCCGGCCCCCATCAACGGCCTGCGTTGGTTTGCTATCGTTTGCACTCAGCTTGCACTTATAGAGAATGCTGTTTCCACTCCTGATCCTCCAGTAAAGCTGGTTCCTGATCCAGGTTTTCACTCAGACCTTCCGTTTCAATACTCGTTCTCCCACCAACACACTCACTCTTTATGCGTCTCTAAAAATGTTTGAACATGCATGGAGTTGCTCACAAGGCTGCATTGTTTGATGCATGCTCCTGTTTACATAATCACTATATGAGTGCAGAAATCCGTCCAGGCCTAGAATGCTCTAGGACGGGAGTGGAACCACTGTTCTAGTCTAAAGAGTCACATACTAAATCCCGGTTCGGTTTTTAGTTCCGGATCCGAGGGGTTGAGTTTCTTGTTGTGTTCCGCTGGTTCTCTTCCTGTGTTCCTGTGGATGGTGACTCAGAGCACCAAGTAACCCTAACTAACACTTCAGTGAAAAAATATCCGTCCTCTTTGTGTTTTGgttctgttttgttctgtatgtttgtttttgtggtcTGCATTTCAGTAGATTTGAGTTCAAAAGGCTTTGCTGCAGTTCCTCTAAAATGTGATgaatcatgtgattttgttggtCCTGACCGAGTGTGCCAAACTTTTTCGTGAAGGCGTGACCTTCGCTATAACTGTGCTTACTGTtttgaagagagaaaaaaaaaattcaatgaaagatgaagaaaaaaaaaaaacctaaacgtCTGTGGTTACTGTCAAAATGACCTTGCAGTAAAAAGATCTTGAGATTCTGAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-030616-178 Predicted to enable oxidoreductase activity and zinc ion binding activity. Is expressed in nervous system; neural tube; swim bladder; swim bladder bud; and trigeminal placode. Orthologous to human VAT1 (vesicle amine transport 1).

Ensembl:

ensembl_id ENSDART00000078982

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049864 lncRNA upstream 237301 19665340 ~ 19677031 (+) True XLOC_025251
TCONS_00052334 lncRNA upstream 441135 19472963 ~ 19473197 (+) True XLOC_025248
TCONS_00049856 lncRNA upstream 553755 19355933 ~ 19360577 (+) True XLOC_025244
TCONS_00049852 lncRNA upstream 573291 19336525 ~ 19341041 (+) False XLOC_025242
TCONS_00049829 lncRNA upstream 1125847 18771528 ~ 18788485 (+) True XLOC_025229
TCONS_00052637 lncRNA downstream 87904 20059678 ~ 20064732 (+) False XLOC_025257
TCONS_00049871 lncRNA downstream 91735 20063509 ~ 20064130 (+) True XLOC_025257
TCONS_00052335 lncRNA downstream 226528 20198302 ~ 20198619 (+) True XLOC_025259
TCONS_00052638 lncRNA downstream 519428 20491202 ~ 20509513 (+) True XLOC_025261
TCONS_00049875 lncRNA downstream 941536 20913310 ~ 20915154 (+) True XLOC_025263
TCONS_00049867 mRNA upstream 100806 19732173 ~ 19813526 (+) True XLOC_025253
TCONS_00049866 mRNA upstream 196398 19687217 ~ 19717934 (+) True XLOC_025252
TCONS_00049865 mRNA upstream 196400 19685873 ~ 19717932 (+) False XLOC_025252
TCONS_00049862 mRNA upstream 231513 19665319 ~ 19682819 (+) False XLOC_025251
TCONS_00049863 mRNA upstream 231521 19665338 ~ 19682811 (+) False XLOC_025251
TCONS_00049869 mRNA downstream 29834 20001608 ~ 20011807 (+) True XLOC_025255
TCONS_00049870 mRNA downstream 41117 20012891 ~ 20021596 (+) True XLOC_025256
TCONS_00049872 mRNA downstream 185182 20156956 ~ 20231781 (+) True XLOC_025258
TCONS_00049873 mRNA downstream 433138 20404912 ~ 20461702 (+) True XLOC_025260
TCONS_00049878 mRNA downstream 1217992 21189766 ~ 21198744 (+) False XLOC_025267
TCONS_00049853 other upstream 559394 19349438 ~ 19354938 (+) True XLOC_025242
TCONS_00049854 other upstream 564515 19349719 ~ 19349817 (+) True XLOC_025243
TCONS_00049850 other upstream 601225 19312991 ~ 19313107 (+) True XLOC_025241
TCONS_00049840 other upstream 946887 18936006 ~ 18967445 (+) False XLOC_025236
TCONS_00049874 other downstream 708149 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049876 other downstream 1053379 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049877 other downstream 1053379 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049893 other downstream 2087539 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049913 other downstream 2597213 22568987 ~ 22569106 (+) True XLOC_025283

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000034_03946027_03949208.mRNA True 1259 mRNA 0.47 3 CI01000034 3945591 ~ 3949656 (+)