RNA id: TCONS_00049853


Basic Information

Item Value
RNA id TCONS_00049853
length 787
RNA type processed_transcript
GC content 0.49
exon number 4
gene id XLOC_025242
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 19336286 ~ 19355200 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCCAGTATCATGCGTCTCTACACTGTCTGTCATCGGTCGAACATACAGAAAATGTTTCAGCCTACACAAACCCCATTTGTTCCCCTGTTTCCAGACGAGAAGAGCTTCGAGCAGTACTTGGACGAGTACTATAAACTGGACTTTGAGGACATCATTGATGACCTGCCGTGCAGATTTCGCTACCGAGAAGTGGTAGCCAATGACTTTGGGCTGAGCACTGATGAGATTCTGAATGCAGGTGATAAGGAGTTGAACCGCTGGTGCTCACTAAGGAAGACCTGCATGTACAGgTCAGAAAGGGAGGAACTCTGTGACCTGAAGAACTTCCAGATAAAAGCACGCAATGTCAAGAAGAAACAGCAAGTGTTCGTGTCTTTGTTTAATGAaaaTGATGGTCAGGAGGAGCAAAAGGATACCAAGGGGAAGGTGGGAAAGAAGAGGAGGGATCGTCTAAAGAAAGCCGAGCTCACGGAGAAGAGCGACACCACTGTGACTGAAGAAACAGCTGAACCTCCTCCAGCAGAGCAAGCAGATGTCCAGGACCTCAAAGCGACCATCGCaaatgatgaagaggaggatgaCGAGGAGTTCCTGGTTCCTAAGAAAAAGATGAAGACGGCAGAGACTGTGGTAACCAAGAGGAAAGAGGCAGATGTTGAAAGAACTGAAAAACCCAAAAGACCCAGAAAGAAAATGCGTCGCTCAGGTGGACGGCGGCAGCTGAAGTCCATGACGGTGAAGATGGCCGGTCGAGAATTCAGCAGACAGAGACTACAAGCCTACGGG

Function

GO:

id name namespace
GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0030686 90S preribosome cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040915-3 Acts upstream of or within definitive hemopoiesis and ribosome biogenesis. Predicted to be part of 90S preribosome. Predicted to be active in nucleolus. Is expressed in eye; immature eye; and somite. Orthologous to human KRI1 (KRI1 homolog).

Ensembl:

ensembl_id ENSDART00000125397

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049852 lncRNA upstream 8397 19336525 ~ 19341041 (+) False XLOC_025242
TCONS_00049829 lncRNA upstream 560953 18771528 ~ 18788485 (+) True XLOC_025229
TCONS_00052636 lncRNA upstream 677147 18670824 ~ 18672291 (+) True XLOC_025227
TCONS_00049812 lncRNA upstream 949595 18399317 ~ 18399843 (+) True XLOC_025220
TCONS_00052635 lncRNA upstream 1152312 18189609 ~ 18197126 (+) False XLOC_025218
TCONS_00049856 lncRNA downstream 995 19355933 ~ 19360577 (+) True XLOC_025244
TCONS_00052334 lncRNA downstream 118025 19472963 ~ 19473197 (+) True XLOC_025248
TCONS_00049864 lncRNA downstream 310402 19665340 ~ 19677031 (+) True XLOC_025251
TCONS_00052637 lncRNA downstream 704740 20059678 ~ 20064732 (+) False XLOC_025257
TCONS_00049871 lncRNA downstream 708571 20063509 ~ 20064130 (+) True XLOC_025257
TCONS_00049849 mRNA upstream 25749 19299309 ~ 19323689 (+) True XLOC_025240
TCONS_00049848 mRNA upstream 28034 19299309 ~ 19321404 (+) False XLOC_025240
TCONS_00049847 mRNA upstream 66913 19248973 ~ 19282525 (+) True XLOC_025239
TCONS_00049846 mRNA upstream 67560 19245804 ~ 19281878 (+) False XLOC_025239
TCONS_00049845 mRNA upstream 111044 19216567 ~ 19238394 (+) True XLOC_025238
TCONS_00049855 mRNA downstream 931 19355869 ~ 19363981 (+) False XLOC_025244
TCONS_00049857 mRNA downstream 92059 19446997 ~ 19457773 (+) True XLOC_025245
TCONS_00049858 mRNA downstream 106053 19460991 ~ 19466015 (+) True XLOC_025246
TCONS_00049859 mRNA downstream 113839 19468777 ~ 19477473 (+) True XLOC_025247
TCONS_00049860 mRNA downstream 254700 19609638 ~ 19610990 (+) True XLOC_025249
TCONS_00049850 other upstream 36331 19312991 ~ 19313107 (+) True XLOC_025241
TCONS_00049840 other upstream 381993 18936006 ~ 18967445 (+) False XLOC_025236
TCONS_00049843 other upstream 407724 18936080 ~ 18941714 (+) True XLOC_025236
TCONS_00049842 other upstream 409738 18936046 ~ 18939700 (+) False XLOC_025236
TCONS_00049839 other upstream 431855 18917461 ~ 18917583 (+) True XLOC_025235
TCONS_00049874 other downstream 1324985 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049876 other downstream 1670215 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049877 other downstream 1670215 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049893 other downstream 2704375 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049913 other downstream 3214049 22568987 ~ 22569106 (+) True XLOC_025283

Expression Profile

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