XLOC_025247 (CU571315.1)


Basic Information

Item Value
gene id XLOC_025247
gene name CU571315.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 19468777 ~ 19477473 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049859
TCTACTGGTGTAGTTCGCACTTTGAGAATGGCTTCAACTACTGAAAGGGATTATACTTGTCCTTTGTGTGGTAATATTTTCAGGTTTCCGGTTATTTTGTCGTGTAGTCACAGTTTTTGTAAAGAATGTCTTCAACAGTTCTGGAGATCCAAAAAACCTAGAATGTGTCCTCTTTGCAAAAAATCATCAAAAGCTGATCCTCCTCTCAATCTTGCGTTGAAAAACCTGTGCGAGTCGTTCCTGAAGGAGAGAGATGAGCAGCGTTCATCCATGTCTGAGGATATCTGCAGTTTACACGGTGAGACGCTCAGACTTTTCTGTCTGGAGGACCAGCAGCTTGTGTGTTTAGTGTGCAGAGATTCACAGAAACACCTCAACCATTCATTCAGACCCATCAGTGAAGCGGTTCACTTGTGTAAGGAGCAGCTCAAAACAGAACTGAGGTATTTAAAGGGGGATCTTCAACAGAGAGAATGGGTGAAAGTAGCATTTGAGAAAACTGTTCAACACATCGAGTCTCAAGCTGATTACACCGAGCGTCAGATTAAAGAGCAGTTTGAGAAGCTTCATCAGTTTCTCAGAAATGAAGAAGAAGCTACAATCACTGCACTGCGAGAGGAAGAGGTGGAGAAGAAGCAAAAGATAAAGGAAAAGCTGAAAGAGATGAAGAGACACATCTcaacactttcacacacacttcAAGACATGGAGAAGATGATGGAGTCCGATGATGTCTGCTTTCTCAAGGAGTTTCCAGACTCAATGGAAAGAATGCAGATCTCAGAGCTGGATCCACAGATACCTTCTGGAGCTTTGATTCAAGTGTCAAGTTACTTGGGCAACCTTTCATTCAGAGTCTGCAATAAGATGCAGGACATCGTGCAATACACTCCAGTCATTTTGGATCCAAACACGGCTAATCCGCGTCTCCTCCTGTCTGATGATCTGACCAGCGTGAAATCTCTTGAGTTTTCTGAAAAACAGCTTCTTCCCAACAATCCCGAAAGATTTGACTGGTTTTTCAGTGTTCTGGGTTCAGAGGGTTTCAACTCGGGCACACACTGCTGGGATGTGGAGGTAAAAGGGAGTTCAGGCTGGAGCATAGGAGTAACCACAGCATCACATGAAAGAACAGGAGGGGATATCTTTGCGACTGATATCTGGAATGTTAAATATAATGAGTCTGTTTTATATGAAGAATTCTATTACCAGTTCCCAAAACCCAATAATGAATTTATTGTTCAGCGAGAGCTTGAGCGTGTGAGAGTTAATCTGGACTATGATGCAGGAACCGTGTCCTTCTCTGATCCTGTTACTAAAACGCATCTACAGACATTTACAACCACCTTCTCTGACACGGTCCTTCCATTCCTGTGTTGTTATGACTCTCTGAAGATCTTACCATACAGTGCTCTGTAAATGTTACACCAGTATGTCCAGAAGAGATCTATATTTAAGCTGTATCACGCCAGTGAAAATGCAGTAACACTTTGGAATAACATTCATCATATTGCcctgcttgattctgattggctaatgagcATTCTAAGGTGTGCTGTAATGTTCAGACAAACACACAGGTAAAGTActttagttttatatttgtattaactGCATTAAAGTTCCAAATTGATATGTTCAGTGATTTTGATTAGTTCTGAGCACGCAATATAAGCAAATAATCAACTCCAGTCTATTGAATTGTTAGACAATAAATCCACACCTTGCATCGTGGCCACATCACCacctcaggtgtgcattattttcttatAACTCAACGTCAAACGATGTAAAATAATCTTTACTTAGTAAATCATTATTAgtcttgttcatttattcgtaCATTgaatccagaaagtattcatagcacttcatttttgtcacattttttttatgttacagccttattccaaaatggaataaattcatttattttctgaaaatacacacaataccccataatgacacttgtctttgggaatttctgctaattcctctttgcagtaccaggtgtacagccattttcagatctctccagaaatgttcaataggatttaggtctgggctctggtgggccactcaaggacattcacagagttgttgtgaagccacttcattgatattgtagcagtgtgctttgggtcattgtcgtgctggaagatgaactgtcgctccagtctgaggtcaagagcactatgaagcaggtttttattcaggatgtctctgtacatcgctgcattcatctttccctctatcctgactagtcttccagttcctgctgctgaaaaacatccccacagcataatgctgccaccaccatccTTCATTGtagagatggtattagcctgaTGATGAGCGGTGTCTAGTTTTCTTCAAAAATTATGTCTGATATTCACTGCagagagttcaattttagtcccatcagaccagagaatttagtttcttatgatctgagagtccttcagatgccttttggcaaattccaggtagGGAGTGGTTTTCGTCTGGCCACCATACAGgcttgattggtggattgctgcacagatgggttgtccttctgtaaggttctcttctctccacagaagaacgctggcgctcagacagagtgaccatcgggttattgatcagcttagatggtcggccagctctaaaaagagtcctggtggttccaaacatcttccacttacaggtGATGGAGGCCACCGTGCTCACTGGAATTTTTAGAGCAGCAGAAGTGTTtatgtaaccttccccagccttgtgcctcgagacaatcctgtcttggaggtttacagacaattcctttgtcttcggTGGAAACGGtggaatgtacctgagctcaatttagagcttcacagcaaaggctgtgaatacgtataatcatgtgatttttcaggttttttattttcaataaatttgcaacaatttcaaaaactcttttttcacattgtcattatggggtgttgtgtgtagaatttgaggaaataaattaattcaatccattttggaataaggctgtaagcatacaaaaatgtggaaaaagtgaagcgctatgaatactttccggatgcactgtaaaaccaaatATTCTTTTGTGAAGTGTGTGAGGAACTAAAAGAAGATTTTGATCTAAGAGATATCACGTGAGTGTAAAATGGAACAGCTCTGAGTGATATATTAGGGCTAGATCTATAGATTTATATACTGTCCcagtaaaacactttaaaatcaatTATGAATGGGATGGTCAGCCAGATGGAGGTCCCCTTACTGAGAAGAGGGGTAACATGGTCATGTTTCCTGCTATTACAAATGAATCTAGTGCATTGCAGTAGTCTAACCATAAAGTAATAAAAGCGTGGACAGCCATCTCTTGTGTGGTGGGATTTAAGAAATGTTTAACTTTAGACGGCAAGCGGAGTTGATAAAAACTGGAGCCAATAACTGAACTGATATGCGTTTCTGTCAATCAATCAAGAAAGGCACCCATattcacaatataaaaaaatatggggTAGCCAGATCTCTTCCAAGCACCTTTGTAAGGTACTAAGAGCGAGAGGGTCATTCCTCTTAATAGGTAAGCAAATCTGCATGTCTTCAGCATTGAAATGGAAGTACATtatataatgtttaacagaacatATATTATAGTGGCTACAAATTTGAGAtgctgtgattttatttttaacaaaatgctTTAAAGTGTTATTAAATCGTCAGCTAATTTATAATCACGATTTTTGAACCAAATCTTCACATGATTTTAACCACACTGCTATTGCTTTAGCTAATGTTTCTTCAGACAGCTGCAAATACGAGACAATTTGCTTGCTAACAAGCATCCTTAACATTACATAATGATAAACACATCAGTTTATGTAGATTAAAATGCTTAGAAAGTTATCATTGAAAATGGTCTGAAAATGTACAAATGATTTGTTACACGCTGATTATAAATCAATGTGCTATATTATGCAATTGAATGCTTGAAAATGTCATTAAACTGGTTATTTAAATTGATTCAAATcagttatatagttttttttaatccacCTTTTCAACTGTGGCAAATGTGTAAAACTGTAAGTAAAGCCTATTCATGGCATATAATTATTCATAGGTGTAGTTGTTCTAACCATGTGTGAATATGACAAGAATAACTATGACTATGACAAATTTTCTGGCATGAGTCTACAGTAGTTTTACGTTTTTATAATGATCATTATACtctttttgttaaacatttgGATCGCTCAAACCAACCAAATATCTCTTTGTTTGTGAAATTATAGGCTAATCCTTCAGTCATTAGATGGTAGTGCAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000031534

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049859 True 4327 mRNA 0.39 6 19468777 19477473

Neighbor

gene id symbol gene type direction distance location
XLOC_025246 pde6ga coding upstream 2762 19460991 ~ 19466015 (+)
XLOC_025245 zgc:123297 coding upstream 11004 19446997 ~ 19457773 (+)
XLOC_025244 spc24 coding upstream 104796 19355869 ~ 19363981 (+)
XLOC_025242 kri1 coding upstream 113577 19336286 ~ 19355200 (+)
XLOC_025243 BX322663.1 coding upstream 118960 19349719 ~ 19349817 (+)
XLOC_025249 rprml coding downstream 132165 19609638 ~ 19610990 (+)
XLOC_025250 itgb3a coding downstream 143561 19621034 ~ 19649535 (+)
XLOC_025251 mettl2a coding downstream 187846 19665319 ~ 19682819 (+)
XLOC_025252 tlk2 coding downstream 208400 19685873 ~ 19717934 (+)
XLOC_025253 mrc2 coding downstream 254700 19732173 ~ 19813526 (+)
XLOC_025429 BX649540.1 misc downstream 10771266 30248739 ~ 30249036 (+)
XLOC_025241 BX322663.3 non-coding upstream 155670 19312991 ~ 19313107 (+)
XLOC_025235 CU151886.1 non-coding upstream 551194 18917461 ~ 18917583 (+)
XLOC_025234 CU151886.2 non-coding upstream 576011 18892650 ~ 18892766 (+)
XLOC_025233 AL772362.1 non-coding upstream 600825 18867835 ~ 18867952 (+)
XLOC_025257 NA non-coding downstream 582205 20059678 ~ 20064732 (+)
XLOC_025259 NA non-coding downstream 720829 20198302 ~ 20198619 (+)
XLOC_025261 NA non-coding downstream 1013729 20491202 ~ 20509513 (+)
XLOC_025262 BX248239.1 non-coding downstream 1202450 20679923 ~ 20680038 (+)
XLOC_025263 BX936284.1 non-coding downstream 1435837 20913310 ~ 20915154 (+)

Expression


Co-expression Network