RNA id: TCONS_00049867


Basic Information

Item Value
RNA id TCONS_00049867
length 4422
RNA type mRNA
GC content 0.51
exon number 28
gene id XLOC_025253
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 19732173 ~ 19813526 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCATCATCAGCACCGGGAGCGCCGCTGGAGTCGCGCGTGGATCAGCGTTTGCAGATgcactttatatttatttctagTTTTGAGCCTGGAGCGGAGCGCCGTGCACTCAGcACATACAGATGGATCAGACACATTTGCGTTTTTCCACGAGGGTGCACAGGGCTGTTTGGGGGTCCGAGACCACGTGCTTCACCTGTCGTCATCCTGTAAGGGTGAAGCCCAGCTATGGAAATGGGTGACCAGGAGTCGGCTCTTCAACATCGGCTCATCCCTCTGCCTGGGCATCACTGTGGGCAACGTCAGCACATTTGGTGACAGGTCACCGCTCGGTGTGTTTCGCTGCGACTACGAGCCTCCACGGGTGCGCTGGACCTGGAGCTGCAGCAAGTTCTTGGAGACGCTTGAAACGCACTTGGCCTCTCCTAAATTACTCCTCAACAGTGGTAATGTGTCAACAACTGCAAGACCACCATCCAAGAAGCTTCTCTGGAGAGTCTATGACAATCAAGACCTATGTGCCAAGTCATACCGAGAAATCTACACCATCCGAGGAAACTCTCACGCCAGCCCATGTTATTTCCCCTTCCTATACAACGGTCAGTGGTTCCACAGCTGCACCAGTGTGGGCAGAGAAGATGGTTTTCACTGGTGTGCCACGACCCACGATTATGGAAAGGACCAGCGCTGGGGCTTCTGCCCAATAAAGAGTGCTGACTGTGAGACGTTTTGGGACATAAACTCTTTGATGGATAACTGTTACCAGTTTAACTTTCAGGCTACACTGTCTTGGAGTGAAGCGCGGACCAGCTGCCAACAGCAGGGAGCAGATCTGCTCAGCATCACCAAAGTAGAGGAACAAATCTATGTCAATGGTTTGCTCATCGGATACAGTGCCACCCTGTGGATGGGTTTGAATGATCTGGATCTGAATGGTGGCTGGCAGTGGGCTGACTCCGCCCCTCTTAAATACCTAAACTGGGAAGCAGAAATGCCAAGTTATGACGAGGAAGAAAACTGTGGTGTGATCAGCACTGATGCTCAGGGCCGCTGGCACAACAGAGACTGTTCAGTGGCTCTGCCTTACATTTGCAAGAAACGACCTAACGCCACACTCGACCCCTTCACCACAGACTCGTGGGCAGATGATGGCCATTACCAGTGTGACGTGGGCTGGCAGAACTTCCAGACGGGCTGCTATTGGCTGAACTCAGACAAACTGGACTGGAGATCAGCTGACAGAACATGTCAGAAGATGGAGGCTAATCTTGTTAGCATACACACCCTGCCAGAGCTCGAGTACATCACGAAACATATGAAGAAAGATATAGAAGAGTTGTGGATTGGTCTTCATGATACAGCAATGCAGATGAACTTTGAATGGACGGATCGCACTCCAGTCATCTTCACTTACTGGCACCCGTTTGAACCCAACAATTTTCGAGAGGTTAATGAGGACTGTGTCACCATCTGGGGCCCTgAGGGCCGCTGGAACGATAGCCCATGTAATTACTCTCTGCCCTCCATCTGTAAGAAACCGGCCCAGAAAGCTGACGACCGGATACAAGACCACGGCTGCAAACGGGGATGGAAATGGCACAGTCCCTCCTGTTTCAAAGTTGGAGAGGAATCCCTAACTTTTAAAGATGCAAAAGAAATGTGCATTAGCAACAATGCCACTCTCGCCATAATTAATAACAGGTTTGAGCAGGCGTTTGTGAGCAGTCTGGTGTTTGGACGAACTGATGATCAGTTTTGGCTTGGCCTTAATAACGAAAACAGCTCCGGCACATTTGGCTGGATAACCGGAGATGAGCTCACATACACCAACTGGAACAGAGACCAGCCAGCGCAGGTAAAGGGTGGCTGTGTGGTGATGGTGGCGGGTCAGGCTATGGGCCTGTGGGAGGTGAAGGACTGTGCCAGCATTCGCTCCAAATACATCTGCAAACAGAATCAGGGCTCATCTTCCATTCCCAGTCCTCCTGCGCCTGTGCCTACACCCTCCCTGACCGGATCATGTCCTTCAGGGTGGAAAAGCAGCAACTCGTTCAGGCACTGCTACAAGGTTTTTCATGCAGGTGCACTGGAAAAGAGGCTGACGTGGATTCAAGCACACAAGTTTTGCCAGAAACACGGAGCTCAGCTGGCCAGTTTCAGCACACCGGAGGAGGAGGCCTTCGTCTTCCAGATCCTCCACGAGGCCTTTGGGGAGGCGGAGGAACATGAGCAGCACTGGCTGTGGATCGGAATCTCTCGCCGCAATAGTGACAGTTGGACATGGAGTGACGGATCAGCTGTGACCTATCAGAACTTTGGACGGGGGAATTATGGGTCTGCTGAGTGCGGAGCTGCTAACATGGCCGACACTAACTGGCTGGTGTCCCACTGTGAATCTGAGCTAGACTGGATCTGCAAAATACCCAAAGGGAAAGTAGAAGAGGAACCTGAGAGCCACGAAGACACTGGTTTAGAGTGGGTTGACTTTGAAGAGGCTCAGTATAAAATGTTTGAGCATCGCTCCACGTGGGACCAGGCTCAGAGGATCTGCTCCTGGTTCGAGGCCTCTCTGGTCTCCATGCACAGCCCAAAGGAGAATCAATTTTTGGTTAGCACTTTACGCAAGatgtCCCGTCAAGAAAATGACCTGTGGTGGGTCGGGTTACACACATTTAAGAACGATGGGAGATTCCGGTGGTCTGATCATTCAGTGCTCAACTATGTGTCTTGGGGGCCAGGACAGCCTCGACCAATCAGCAAAGAGACAAAATGTGTCCAAATCTCTGCCTCAAAAGGTGACTGGTCAGACCAGAGGTGTCATGTGGATCTTCCGTATGTGTGTAAGAGAGTAAATGTGACCGGCACAATCCCTCCCACACCCTCCCTGCCTCTCACACCCGCTGGCTGCCCTCAGGGCTGGACTCCTTTTTTACACAAGTGCTATAAGGTGTTTGGAGAGGAGCTGTCGAGTCGCAGCACTTGGGACGCTGCTTCTAAGACGTGTCTGACACAAAGAGCCACACTGGTGACGGTGCCAAACCACAGAGTTCAGGCGTTCCTCGTGACTCTGCTTCCCAACAGCAGTTTTCATTTGTGGGTCGGACTCACTTCAGAATCACAGGCTCAGTTCAAGTGGTTTGAACCTGGTTTTCTCAGCTACACTAACTGGGCCCCTGGAGAACCAGtggacaacaaacaaatgaaaagccCGGGTAACTGTGTTTTGCTTCTGCATGGTAGTCCTCAGCGGATTACAGGCATGTGGGCGTCTCGCAGGTGTGATGCAGAGAAACATGGCTTCATCTGCATGAAGGATAAAGACCCTGCCCTGTCACCTGGCGTGGATCGTCTTCCCCCATCATTAGATGGTCCTTTAGAGTTTGATGGTGTTCAGTACCGGATCCTGCAGAAGCGTCTGGATTGGCATTCAGCTCTGCAAGTGTGTGAATCAGTCAACGGGACACTGGCTGCTGTACGGGAACCTCGGCAGAATGCTTACCTCACCCTTCTCCTCAGCACTCTCCGGAAACCTGCCTGGATTGCTCTACACAATGAAGGGGGGCGGAGCTACTCGTGGTTGGGTGAAGAGGAGATCACATTCAGTGACTGGCGGGACGGAGAGCCCAATCAGATGTACGGTTGTGGTCACATGATCACTGAGGGCCAGTGGACTGTGGCTGCTTGCAAttcaaaattaaatgcagccatttgtGAAATGAACACTGAGACGACAAAAGAGCATCGATGGATGTATCCTGGTGTTTGCCCACAGCCTGTTGGTAACTGGTCCTGGATTCCTTTCAGAAATCACTGCTACTCCTTCATCCTACACGAACTACAGTTCAAGCAGGAGGCCATTCGCATGTGTAGCAAAGTTGGTGCTAAACTGTTGTCAATATTGGATGAAAACGAGAATGGGTTTGTATGGGAGCACATGCAGAGTTTTCAACATCAGGCTCACGGCGCTTGGCTAGGAATGATCTTTAACTCTAAAGAAGGCAGTCTGGAGTGGTCCAGCGGTGAAATTGTGGATTATAGTAACTGGGAGCAGCAGGATGCTAATCTGAGCATGCTATCTGCTAACAGCTGCTTCTGGGTGAAGAGCAACACGGGCCTCTGGAGGCCTGAATCCTGCAAAAACCGCACTCATGGAGTCATCTGCAAACGGCCACGAGGACCCACAGCAGAGCCTGTGAATAGCTCTGAAGTAGACCATCTGCACGTGTTGATTCAGGTCCTGGTGGCGGTGCTTGTTCTGATGGCTCTGGTAGTGGGCGGGGTGTACCTGTATCGTAGGCGGAGCTTCGGCTCCACAGGTGCCTTTGAGAGTGCTCGGTACAGCCGCACTAACTCCACCCCCTCTGAAGAAGCCGAAAAAAACATTCTCGTTTCAGACATGGAGTTAAACGAACAGGGTGAATAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090915-5 Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MRC2 (mannose receptor C type 2).

Ensembl:

ensembl_id ENSDART00000178684

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049864 lncRNA upstream 55142 19665340 ~ 19677031 (+) True XLOC_025251
TCONS_00052334 lncRNA upstream 258976 19472963 ~ 19473197 (+) True XLOC_025248
TCONS_00049856 lncRNA upstream 371596 19355933 ~ 19360577 (+) True XLOC_025244
TCONS_00049852 lncRNA upstream 391132 19336525 ~ 19341041 (+) False XLOC_025242
TCONS_00049829 lncRNA upstream 943688 18771528 ~ 18788485 (+) True XLOC_025229
TCONS_00052637 lncRNA downstream 246152 20059678 ~ 20064732 (+) False XLOC_025257
TCONS_00049871 lncRNA downstream 249983 20063509 ~ 20064130 (+) True XLOC_025257
TCONS_00052335 lncRNA downstream 384776 20198302 ~ 20198619 (+) True XLOC_025259
TCONS_00052638 lncRNA downstream 677676 20491202 ~ 20509513 (+) True XLOC_025261
TCONS_00049875 lncRNA downstream 1099784 20913310 ~ 20915154 (+) True XLOC_025263
TCONS_00049866 mRNA upstream 14239 19687217 ~ 19717934 (+) True XLOC_025252
TCONS_00049865 mRNA upstream 14241 19685873 ~ 19717932 (+) False XLOC_025252
TCONS_00049862 mRNA upstream 49354 19665319 ~ 19682819 (+) False XLOC_025251
TCONS_00049863 mRNA upstream 49362 19665338 ~ 19682811 (+) False XLOC_025251
TCONS_00049861 mRNA upstream 82638 19621034 ~ 19649535 (+) True XLOC_025250
TCONS_00049868 mRNA downstream 100806 19914332 ~ 19971774 (+) True XLOC_025254
TCONS_00049869 mRNA downstream 188082 20001608 ~ 20011807 (+) True XLOC_025255
TCONS_00049870 mRNA downstream 199365 20012891 ~ 20021596 (+) True XLOC_025256
TCONS_00049872 mRNA downstream 343430 20156956 ~ 20231781 (+) True XLOC_025258
TCONS_00049873 mRNA downstream 591386 20404912 ~ 20461702 (+) True XLOC_025260
TCONS_00049853 other upstream 377235 19349438 ~ 19354938 (+) True XLOC_025242
TCONS_00049854 other upstream 382356 19349719 ~ 19349817 (+) True XLOC_025243
TCONS_00049850 other upstream 419066 19312991 ~ 19313107 (+) True XLOC_025241
TCONS_00049840 other upstream 764728 18936006 ~ 18967445 (+) False XLOC_025236
TCONS_00049874 other downstream 866397 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049876 other downstream 1211627 21025153 ~ 21030871 (+) False XLOC_025264
TCONS_00049877 other downstream 1211627 21025153 ~ 21030873 (+) True XLOC_025264
TCONS_00049893 other downstream 2245787 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049913 other downstream 2755461 22568987 ~ 22569106 (+) True XLOC_025283

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000034_04019323_04045212.mRNA True 4258 mRNA 0.52 25 CI01000034 4019240 ~ 4045212 (-)