XLOC_025255 (asb16)


Basic Information

Item Value
gene id XLOC_025255
gene name asb16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 20001608 ~ 20011807 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049869
tttgtaGTCACTCTCCTTTAGATGTCCCGGGACACTTTTGCCTTCTCCTCCGCCTCTCTGCGCTCCTTGAGGCTGGAGCAAGAGCTTCAGGACTGGGAGGATGCCAGGCGGGCGCTGGCACACAGGAGGGTCATGTTGAGACGTCCGCTGCCTGCCGCCCCCAGGCTCCGGCACGGGAACGAGAGGATCCAGACCGTCCACGCTCCGCCACCCCAAATAAAGTGCAGAGACACTGCCATCCATAACACCTTCATGTGCGGAGATATGAAGGGAGTGTACGCCGTCCTCAAAGAGCCGGGCATGGTGAACGCCTTGATGGAGACCGTGCATGAGGAGATGGTGTGGACCCCGGAGATGGGAATGTGGACTCTGAGCTCCAAGATCAAGCAGACGTCTGCGCTGCGTCTGgcggccagcagggggcactctgCCTGTGTGGAGGAGCTGCTGTTCAGGGGAGCAGAGGTGGACGCAGACCCCGGTGGCCGAACTGCTTTACATGATGCCTGCTCCGGAGGCCATGATGTCTGCGTGCGTCTGCTCCTGGACCACGCCGCTGACCCGGACCTGCTGGCGATGGATGGCAATGCCCCGCTGCACCTCTGCAATGCACCGCACACATATCAGTGTGCGGAGCTGTTGGTGAGCAGTGGCGCGCTAGTGAACGTGGCCCAGCGGGACTCATGTCTGACCCCTCTTCACGTGGCCTGCAGGAGAGGACTGGAGGAGCACGTTGAGCTCTACCTGTCCTATGGTGGAGACGTGATGGCCCGCAGCCAGGAAGGAGAGACGCCACTGAACGCAGCCTGTGCTGGAGCGGAGAGGCCTGCAGAAATGGGCCGCTATCTGCGTATTGTCCAGAACCTGCTAGCGGCTGGAGCTGATGCACAGACATGTGGTAGAAAGAAGCACACAGCCCTGCATAACGCCTGTGGAAACTGCTGCCCGCGCATTGTTAAGCTTCTGCTGGAACATGGGGCTCGTGCTGATGTGGAGAACTGTGCCGGATACACACCGATGGACTGCCTGCTGCAGGTAATAGAGGATTATCCCGAGCAGCAGCCAGAGATTGTGGCCCAGTTTCTTCTTAACTATGGAGCAAAGCCGCCATCCCCTAGAATGCTGAAACTCTGCTTGCCCTCTCTTGCCACTCTGGAGGTGATGCTGAATTGTTATCCAGTCATTCCAGCTTGTGAAGAGTGGCTTGAAGACACAACAGACCAAATAACCAAGGATCATCAGTGTTTTTTGGATGCGGTGCGGCAGATGAGCGGTCAGCTTCGCTCTCTTCAACACCTCTGCCGATGTGCCCTCCGGCGCCACCTGGGGTCCCTGTGCCACATCTCTATTAGCCAGCTTAACATCCCCAGCACTTTAAAAGATTATCTGCTGCTGCACAATGACGGACAACTCCGCTGAGTtgcacaaacaaaacataaacgaCTGGAAACAGTGGGTTGGATCTTTTTACAAGCTATCTTTATCAGCTGTGACAGATTTttactgctgctttcagtagacACTGTCCATTTAAGGGGAAATAATGGCCTGGTTGAACTGGTCCATTAACCCGTTATACCGAGATGCCCACAGTGGTCTGACACACAGAAATAATGCACTGCAAATATTGATTGATGGATAGTGGTTGAAAATGTGCCACTGGCTATTCTCACAatgtgaaataaacaaacaaatgagaaCCAGA

Function

symbol description
asb16 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Orthologous to human ASB16 (ankyrin repeat and SOCS box containing 16).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-031031-3 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Orthologous to human ASB16 (ankyrin repeat and SOCS box containing 16).

Ensembl:

ensembl_id ENSDARG00000056468

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049869 True 1705 mRNA 0.55 6 20001608 20011807

Neighbor

gene id symbol gene type direction distance location
XLOC_025254 vat1 coding upstream 29834 19914332 ~ 19971774 (+)
XLOC_025253 mrc2 coding upstream 188082 19732173 ~ 19813526 (+)
XLOC_025252 tlk2 coding upstream 283674 19685873 ~ 19717934 (+)
XLOC_025251 mettl2a coding upstream 318789 19665319 ~ 19682819 (+)
XLOC_025250 itgb3a coding upstream 352073 19621034 ~ 19649535 (+)
XLOC_025256 tmub2 coding downstream 1084 20012891 ~ 20021596 (+)
XLOC_025257 NA coding downstream 47871 20059678 ~ 20064732 (+)
XLOC_025258 ngfra coding downstream 145149 20156956 ~ 20231781 (+)
XLOC_025259 NA coding downstream 186495 20198302 ~ 20198619 (+)
XLOC_025260 nxph3 coding downstream 393105 20404912 ~ 20461702 (+)
XLOC_025429 BX649540.1 misc downstream 10236932 30248739 ~ 30249036 (+)
XLOC_025248 NA non-coding upstream 528411 19472963 ~ 19473197 (+)
XLOC_025243 BX322663.1 non-coding upstream 651791 19349719 ~ 19349817 (+)
XLOC_025241 BX322663.3 non-coding upstream 688501 19312991 ~ 19313107 (+)
XLOC_025235 CU151886.1 non-coding upstream 1084025 18917461 ~ 18917583 (+)
XLOC_025234 CU151886.2 non-coding upstream 1108842 18892650 ~ 18892766 (+)
XLOC_025261 NA non-coding downstream 479395 20491202 ~ 20509513 (+)
XLOC_025262 BX248239.1 non-coding downstream 668116 20679923 ~ 20680038 (+)
XLOC_025263 BX936284.1 non-coding downstream 901503 20913310 ~ 20915154 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_03915853_03921269 ASB16 coding CI01000034 null 3915751 ~ 3921269 (-)