RNA id: TCONS_00049777


Basic Information

Item Value
RNA id TCONS_00049777
length 778
lncRNA type retained_intron
GC content 0.53
exon number 2
gene id XLOC_025207
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 17653784 ~ 17680114 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAGTGAGCACGGAGATCCGTAGGGGAAGTGTGGCTGCTGTTATGGCGGACCCGGCGGCACAGAGCTCCGCGCAGCCCCGGCTTCAGCAAGCGCAGTCCAGCGGCCCGACCGGCTCCAACTCGAACCCCGGAGCCGGGAGCAGCGACCCGGCCCGACCGGGCCTAAGCCAACAGCAATGGTCCAGCCAGAAGAAAGCCCAAGTCCGTTCGTTTCCGCGGGCGAAAAAGCTGGAGAAACTCGGAGTGTTTTCATCCTGCAAGGCGAATGATGCTTGCAAGTGCAATGGCTGGAAAAACCCCAATCCACCAACAGCGGCTCGTATGGAGCTCCAGCAGCAGGCCGCCAGTCTGACGGAGACCTGCCGAAGCTGTGGACACTCTTTGGGTAGGAAGAATCAGACCTGGGGCCTCTACCGTGAAGCTGGATTAGCTGACTAGCCAGTTAAATGTTGGTTTAGTTTGCACCAATCTTGGGTTTTTAGTAATATGAAGGCAGCTCAACATTAATCACTAGTGTTTGCCATGGTATTAAAGGGCAGCAAAGCTAAGATGAGCTACCTTTATGGTATCTAAATTCAGAATTTGTTACAAACTAAACTGAAAGTCAACTGGTTAGCCAGCTAatctaagggtgtactcacactatgtacagttgccttgaacatGTGCCGAAGTACGCTTGTCCCCTTCCCTCTCCCCCAATGGCCTGCACATACATTGTATCCGAGCCGGagatgcttacgtcatcgatgatgcgactgttcagtttaacagaaga

Function

GO:

id name namespace
GO:0060349 bone morphogenesis biological_process
GO:0048167 regulation of synaptic plasticity biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060173 limb development biological_process
GO:0001816 cytokine production biological_process
GO:0045589 regulation of regulatory T cell differentiation biological_process
GO:0007616 long-term memory biological_process
GO:0043966 histone H3 acetylation biological_process
GO:0016573 histone acetylation biological_process
GO:1903010 regulation of bone development biological_process
GO:0061035 regulation of cartilage development biological_process
GO:0106077 histone succinylation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005813 centrosome cellular_component
GO:0000123 histone acetyltransferase complex cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0045252 oxoglutarate dehydrogenase complex cellular_component
GO:0005694 chromosome cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003713 transcription coactivator activity molecular_function
GO:0106078 histone succinyltransferase activity molecular_function
GO:0004402 histone acetyltransferase activity molecular_function
GO:0008080 N-acetyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080403-11 Predicted to enable N-acyltransferase activity; chromatin binding activity; and transcription coactivator activity. Involved in histone acetylation; regulation of bone development; and regulation of cartilage development. Acts upstream of or within bone morphogenesis; heart development; and limb development. Predicted to be located in centrosome and nucleus. Predicted to be part of histone acetyltransferase complex. Is expressed in brain; fin; head; heart; and otic vesicle. Orthologous to human KAT2A (lysine acetyltransferase 2A).

Ensembl:

ensembl_id ENSDART00000163603

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052633 lncRNA upstream 770500 16875757 ~ 16883304 (+) True XLOC_025197
TCONS_00052632 lncRNA upstream 776108 16875494 ~ 16877696 (+) False XLOC_025197
TCONS_00049755 lncRNA upstream 777546 16874401 ~ 16876258 (+) False XLOC_025197
TCONS_00052631 lncRNA upstream 1412464 16186593 ~ 16241340 (+) True XLOC_025185
TCONS_00049734 lncRNA upstream 1421522 16229927 ~ 16232282 (+) True XLOC_025186
TCONS_00049802 lncRNA downstream 350659 18006111 ~ 18008388 (+) True XLOC_025214
TCONS_00052634 lncRNA downstream 385161 18040613 ~ 18047299 (+) False XLOC_025215
TCONS_00052635 lncRNA downstream 534157 18189609 ~ 18197126 (+) False XLOC_025218
TCONS_00049807 lncRNA downstream 534233 18189685 ~ 18197126 (+) True XLOC_025218
TCONS_00049812 lncRNA downstream 743865 18399317 ~ 18399843 (+) True XLOC_025220
TCONS_00049773 mRNA upstream 1905 17615599 ~ 17651899 (+) False XLOC_025206
TCONS_00049775 mRNA upstream 3179 17634952 ~ 17650625 (+) True XLOC_025206
TCONS_00049774 mRNA upstream 13243 17616201 ~ 17640561 (+) False XLOC_025206
TCONS_00049772 mRNA upstream 49695 17547532 ~ 17604109 (+) True XLOC_025205
TCONS_00049771 mRNA upstream 52922 17547532 ~ 17600882 (+) False XLOC_025205
TCONS_00049780 mRNA downstream 33967 17689419 ~ 17702622 (+) False XLOC_025208
TCONS_00049781 mRNA downstream 33967 17689419 ~ 17710221 (+) True XLOC_025208
TCONS_00049782 mRNA downstream 88887 17744339 ~ 17860047 (+) False XLOC_025209
TCONS_00049783 mRNA downstream 150761 17806213 ~ 17856439 (+) False XLOC_025209
TCONS_00049784 mRNA downstream 191438 17846890 ~ 17860047 (+) True XLOC_025209
TCONS_00049769 other upstream 130877 17472147 ~ 17522927 (+) True XLOC_025202
TCONS_00049766 other upstream 191919 17395239 ~ 17461885 (+) True XLOC_025203
TCONS_00049749 other upstream 924789 16724614 ~ 16729015 (+) False XLOC_025193
TCONS_00049746 other upstream 975154 16668603 ~ 16678650 (+) False XLOC_025192
TCONS_00049741 other upstream 1065175 16569265 ~ 16588629 (+) True XLOC_025190
TCONS_00049790 other downstream 223040 17878492 ~ 17897852 (+) True XLOC_025211
TCONS_00049819 other downstream 782033 18437485 ~ 18469009 (+) False XLOC_025223
TCONS_00049828 other downstream 1100810 18756262 ~ 18769951 (+) True XLOC_025228
TCONS_00049837 other downstream 1212383 18867835 ~ 18867952 (+) True XLOC_025233
TCONS_00049838 other downstream 1237198 18892650 ~ 18892766 (+) True XLOC_025234

Expression Profile

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