RNA id: TCONS_00049784


Basic Information

Item Value
RNA id TCONS_00049784
length 1033
RNA type mRNA
GC content 0.52
exon number 5
gene id XLOC_025209
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 17744339 ~ 17860047 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCATGTAATGTTTGAAGAATTCTAGAGGAAAATTTGGAGGAAAGTGTTAACAGTAAAAAAGTTAGGAATTGTTCAattaattgcattatttaaaagttttttttaaatcaatggcTCTGTCTCTCTTCAGCTGCTGTCAGCGACCCGGAGTCTGCGCTACGAGTGGACGACGCTCACTGCAGTTCAGTGGTGCTGACGCCCATATCAGAGGTTTCGTCTGCTGACCTGTGCGCATCCTCTCCTCACTCGCAGCACCCCGACGCTCTCCTGGAACCCAGCGGAGACACAAGCCCTCCTCCACAGGACAGCCCTGCAGCAGACACACCGGCAGAGAAGGAGCCCAAAAAGTCCAAACAACACCTGCACTGCCCCATCTGCAAAGTCACGGTCAACTCCAGCATTCAGATGGAGGCTCACAATAGTGGCACCAAGCATAAACtaatgatggatggacagagtgTGTTGCCACGGAGACGAGGGAAAGCGATGTCATCCCGCCCTTCGTGTAAAAGCAAGCGATTGGCCAGCAAGGGAAGTCTGGGCGTGGCCAGCAAGAGCTTCTACTGTGAAGTTTGCGAGATCCATGTTAACTCTGAGACTCAACTCAGCCAGCACATGAACAGTCGAAGGCATAAGGATAGACTGGCTGGGAAACCTCCAAAACCCAAGTTCAACCCTCATGCCAAGAGTCAGCCTACCTCAACCGTGTCGCAGGGTGTCCGATGGAACGGTTATGCGGGCGGCGCAGTGTCTGCCATGAAGAAAGTTATCAGCCAATGCAATCTCTCCTCTCTGTCCTCACAGactaAACTTGTTCTACAGAAGCAATTGACAAAAAATTTGACCGCCAGCTTCCTGCCCACCCCCTTAACTCCACCCACCCTCTGCACCGTTGCGGCCAATCCTCTCGCACTGCGACACCCGCCGGGCACTACTTTCATTCAGACGCCCATCCTCGGCCCAGCCCTCTTTAGGCCAGCACCAGGACCTCTGAGAGCCACACACACTCCCATAATATTCTCCCCCTATTGA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091112-1 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Located in nucleus. Is expressed in Purkinje cell. Orthologous to human ZNF385C (zinc finger protein 385C).

Ensembl:

ensembl_id ENSDART00000193384

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049777 lncRNA upstream 191438 17653804 ~ 17655452 (+) False XLOC_025207
TCONS_00052633 lncRNA upstream 963586 16875757 ~ 16883304 (+) True XLOC_025197
TCONS_00052632 lncRNA upstream 969194 16875494 ~ 16877696 (+) False XLOC_025197
TCONS_00049755 lncRNA upstream 970632 16874401 ~ 16876258 (+) False XLOC_025197
TCONS_00049734 lncRNA upstream 1614608 16229927 ~ 16232282 (+) True XLOC_025186
TCONS_00049802 lncRNA downstream 146064 18006111 ~ 18008388 (+) True XLOC_025214
TCONS_00052634 lncRNA downstream 180566 18040613 ~ 18047299 (+) False XLOC_025215
TCONS_00052635 lncRNA downstream 329562 18189609 ~ 18197126 (+) False XLOC_025218
TCONS_00049807 lncRNA downstream 329638 18189685 ~ 18197126 (+) True XLOC_025218
TCONS_00049812 lncRNA downstream 539270 18399317 ~ 18399843 (+) True XLOC_025220
TCONS_00049781 mRNA upstream 136669 17689419 ~ 17710221 (+) True XLOC_025208
TCONS_00049780 mRNA upstream 144268 17689419 ~ 17702622 (+) False XLOC_025208
TCONS_00049779 mRNA upstream 166776 17653846 ~ 17680114 (+) False XLOC_025207
TCONS_00049778 mRNA upstream 166776 17653846 ~ 17680114 (+) True XLOC_025207
TCONS_00049776 mRNA upstream 173684 17653784 ~ 17673206 (+) False XLOC_025207
TCONS_00049786 mRNA downstream 18077 17878124 ~ 17910375 (+) False XLOC_025211
TCONS_00049787 mRNA downstream 18134 17878181 ~ 17894232 (+) False XLOC_025211
TCONS_00049788 mRNA downstream 18134 17878181 ~ 17909098 (+) False XLOC_025211
TCONS_00049789 mRNA downstream 18419 17878466 ~ 17909134 (+) False XLOC_025211
TCONS_00049791 mRNA downstream 50522 17910569 ~ 17928233 (+) True XLOC_025212
TCONS_00049769 other upstream 323963 17472147 ~ 17522927 (+) True XLOC_025202
TCONS_00049766 other upstream 385005 17395239 ~ 17461885 (+) True XLOC_025203
TCONS_00049749 other upstream 1117875 16724614 ~ 16729015 (+) False XLOC_025193
TCONS_00049746 other upstream 1168240 16668603 ~ 16678650 (+) False XLOC_025192
TCONS_00049741 other upstream 1258261 16569265 ~ 16588629 (+) True XLOC_025190
TCONS_00049790 other downstream 18445 17878492 ~ 17897852 (+) True XLOC_025211
TCONS_00049819 other downstream 577438 18437485 ~ 18469009 (+) False XLOC_025223
TCONS_00049828 other downstream 896215 18756262 ~ 18769951 (+) True XLOC_025228
TCONS_00049837 other downstream 1007788 18867835 ~ 18867952 (+) True XLOC_025233
TCONS_00049838 other downstream 1032603 18892650 ~ 18892766 (+) True XLOC_025234

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000034_05302438_05326245.mRNA True 1312 mRNA 0.55 7 CI01000034 5302288 ~ 5326245 (-)