RNA id: TCONS_00049775


Basic Information

Item Value
RNA id TCONS_00049775
length 685
RNA type mRNA
GC content 0.57
exon number 5
gene id XLOC_025206
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 17615599 ~ 17651899 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATGGCGGGGCGAGGTGGACCAGCGCGGACCAACGGTGCCGCCCCCGTCGGGAACAAAATCTGCCAGTTTAAGCTTGTGTTGCTGGGAGAGTCTGCAGTAGGCAAGTCCAGCCTGGTGCTGCGCTTCGTCAAAGGCCAGTTTCACGAGTACCAGGAGAGCACCATTGGAGCTGCTTTCCTCACACAGACACTCTGCTTGGACGATACGACAGTAAAGTTTGAGATCTGGGACACGGCCGGACAGGAGCGGTATCACAGTTTGGCCCCTATGTATTACAGAGGAGCCCAGGCAGCCATCGTCGTCTACGACATTACTAACACAGACACATTTACTAGAGCAAAGAACTGGGTGAAGGAGCTGCAGCGCCAGGCCAGTCCAAATATCGTTATTGCTCTGGCAGGCAACAAAGCAGATCTGGCCAACAAGAGAGCCGTTGACTTTCAGGAGGCCCAGGCATACGCAGATGACAACAGCCTACTCTTCATGGAGACGTCTGCAAAGACCGCCATGAACGTCAATGAGATCTTCATGGCTATCGCCAAGAAGCTTCCGAAAAGCGAGCCGCAGGGTGGAGCGGGCAGCGGGGGACGGGCCCGAGGAGGGGTGGACTTACAGGAGACGGCGCCTCAGGGAAGAAGCGGCCAGTGCTGTGGAGGCGGAAACTAACCAGTGGACCAATCAGCT

Function

GO:

id name namespace
GO:0030100 regulation of endocytosis biological_process
GO:0006886 intracellular protein transport biological_process
GO:0006897 endocytosis biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0001525 angiogenesis biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0005768 endosome cellular_component
GO:0005769 early endosome cellular_component
GO:0030139 endocytic vesicle cellular_component
GO:0005886 plasma membrane cellular_component
GO:0012505 endomembrane system cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005515 protein binding molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
ko04014 Ras signaling pathway
ko04144 Endocytosis
ko04145 Phagosome
ko04962 Vasopressin-regulated water reabsorption
ko05132 Salmonella infection
ko05152 Tuberculosis
ko05146 Amoebiasis
ko04131 Membrane trafficking
ko04147 Exosome
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-031118-30 Predicted to enable GTPase activity. Acts upstream of or within several processes, including angiogenesis; gastrulation with mouth forming second; and regulation of endocytosis. Located in early endosome. Is expressed in axial vasculature; blood; and intermediate cell mass of mesoderm. Orthologous to human RAB5C (RAB5C, member RAS oncogene family).

Ensembl:

ensembl_id ENSDART00000191833

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052633 lncRNA upstream 751648 16875757 ~ 16883304 (+) True XLOC_025197
TCONS_00052632 lncRNA upstream 757256 16875494 ~ 16877696 (+) False XLOC_025197
TCONS_00049755 lncRNA upstream 758694 16874401 ~ 16876258 (+) False XLOC_025197
TCONS_00052631 lncRNA upstream 1393612 16186593 ~ 16241340 (+) True XLOC_025185
TCONS_00049777 lncRNA downstream 3179 17653804 ~ 17655452 (+) False XLOC_025207
TCONS_00049802 lncRNA downstream 355486 18006111 ~ 18008388 (+) True XLOC_025214
TCONS_00052634 lncRNA downstream 389988 18040613 ~ 18047299 (+) False XLOC_025215
TCONS_00052635 lncRNA downstream 538984 18189609 ~ 18197126 (+) False XLOC_025218
TCONS_00049807 lncRNA downstream 539060 18189685 ~ 18197126 (+) True XLOC_025218
TCONS_00049772 mRNA upstream 30843 17547532 ~ 17604109 (+) True XLOC_025205
TCONS_00049771 mRNA upstream 34070 17547532 ~ 17600882 (+) False XLOC_025205
TCONS_00049770 mRNA upstream 93504 17537352 ~ 17541448 (+) True XLOC_025204
TCONS_00049768 mRNA upstream 111870 17456428 ~ 17523082 (+) False XLOC_025202
TCONS_00049767 mRNA upstream 111926 17456428 ~ 17523026 (+) False XLOC_025202
TCONS_00049776 mRNA downstream 3159 17653784 ~ 17673206 (+) False XLOC_025207
TCONS_00049779 mRNA downstream 3221 17653846 ~ 17680114 (+) False XLOC_025207
TCONS_00049778 mRNA downstream 3221 17653846 ~ 17680114 (+) True XLOC_025207
TCONS_00049780 mRNA downstream 38794 17689419 ~ 17702622 (+) False XLOC_025208
TCONS_00049781 mRNA downstream 38794 17689419 ~ 17710221 (+) True XLOC_025208
TCONS_00049769 other upstream 112025 17472147 ~ 17522927 (+) True XLOC_025202
TCONS_00049766 other upstream 173067 17395239 ~ 17461885 (+) True XLOC_025203
TCONS_00049749 other upstream 905937 16724614 ~ 16729015 (+) False XLOC_025193
TCONS_00049746 other upstream 956302 16668603 ~ 16678650 (+) False XLOC_025192
TCONS_00049741 other upstream 1046323 16569265 ~ 16588629 (+) True XLOC_025190
TCONS_00049790 other downstream 227867 17878492 ~ 17897852 (+) True XLOC_025211
TCONS_00049819 other downstream 786860 18437485 ~ 18469009 (+) False XLOC_025223
TCONS_00049828 other downstream 1105637 18756262 ~ 18769951 (+) True XLOC_025228
TCONS_00049837 other downstream 1217210 18867835 ~ 18867952 (+) True XLOC_025233
TCONS_00049838 other downstream 1242025 18892650 ~ 18892766 (+) True XLOC_025234

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00016922 True 5499 mRNA 0.47 23 CM030122.1 34727405 ~ 34757001 (+)