RNA id: TCONS_00049792


Basic Information

Item Value
RNA id TCONS_00049792
length 2934
RNA type mRNA
GC content 0.47
exon number 4
gene id XLOC_025213
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 17933132 ~ 17946949 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGATCTGCCTCTCCCTTCCGCGTCCTCGTGCACGCAGCAGCAGCTCAAGTGCCAGTTTCCGTTTTATTTCCTGATTATTGCTAGTCCTCGGAACGGACAGGCGGGGGTTTCTGCAGCGGAGAAACGTGGAATTTGGCCGAACGGCGCTTTTGAACCTTCAGCTTCGGGAACAGTGACAGCTTTTCTACATCTGCCAGCGTTATAATCCAAAGCAGTGTAGCAATGGAAGCTGAACAGAATCAGGAAGTTCAAGAGGCAGTTCCTGAGACGCAGGAAGTGGCGGCTCAGCAAGAGGAGAAATCAGAGCCCAAGTCCGAAGAGGCGCCTCAGGCTCCTTCAGAAGCAGCAGCAGATCCTCCAGCAGCGGCCACTGAACCGGAGAAGCCCCAAGAGAGAGAGCCTTCTGCCGAGGAACAGCAGAAAGCAACAGAATCTGCAGCACCTCCTGCCAAACCCTCTGAACCCGAGGCGAAATCTCCAGAGGATTCCTCTGAAAAAACCCCTGAGCAGCAGCAGAAGTCGTCCGAGGAGCCATCGCTTCAAGTCAATTCTGAGCCCGAGAAGCAGGAGGAGGAAGCTGTGAAAGAGGCTGAGTCTAAGAAAGAGGAGCCTGTCAAAGAGGCGGATTCCAAACCTGCTGCTGTGAATGAAGTCAAGCCAGAGGAGTCTGAGAAAAGTGAGACGACAAAAGCAGAAGGAGAAAAGGTACAAGTGCCCGATTCTGATGGAGTTCAAGCTGAGCCTCCAAAAGAGGCCGAACCTGAGGAGAAGAAACCAGAGCTGCCACTCTTTTATGGCTGGTTCCTGCTTAAAGAGGAAGAGGAGCGAATTAAGTGTGCAACCATGGACTTCCTAAAGACGCTGGATACATTGGAAGCCTTCAAAGAACACATAAGTGAATTTACGAGTGAGGCAAATAAAGAGGTGGATCTTGAGCAGTATTTCCAGAACCCACTGCCACTCCACTGCACTACAAAGTTCTGTGACTACGGCAAAGCAGAAGGAGCAAAAGAGTACGCAGAGTTGCAGGTGGTCAAGGAAGCGACTGGCAAATCAGAGGAGCTCTCGGTCACCGCTCTCATCGTGACCCCTCGTACATTCGGGGCGCGCGTGGCTTTGACCGAAACCCAGCTGAATCTGTGGCCTGAGGGAGAGGATAAAGTTGGGGTTGCTCCAACCCTCTTGCCCGGCGTAGAGTCTCTGCCGGCTGGCAGTCGCGCCCACGTCACATTAGGCTGCTCGGCTGGTGTGGAGGCGGTTCAGACCGGTCTGGATCTGCTGGAGATCCTGGTTCTGCAGAAGGAGGGTAAGGAGGGCACTCAGGTGGAGATGGATATGGGCACTTTGTCCTACCTTAGCGAGGGCCGCTGGTACCTAGCCCTGAGGGAAGCCATTACCGCAGACACCACCTTCTCTAGCTTCTCTGAAGACAAGCCTGTCAGCGACCAGGGCAAAAAGGATGgagagaagaaaaagaaaaagtgtacCATTCTGTGAGCTGAAAGCACGAGGAGGAGGAGAGAGGGTGAAGGAGACATTTTTTTTCCTAAGGGCTCCGGCCTGCGGTTGTCTGAGGCTGATGTtgtgtttttgcatgtgtgtaGGTGGATTTGCGTGTGTTTCGCAGCTTTAATGTGTGCACAGGGATGGCTGGGGATGATTTGGCTGGCAGTGTGAAACCAAAGCGGCCTGCTGGCTTTCTCTTTAGCTGGTgcctttttttttcccctttttgccTGGCAACACAAGCCCAGAGGCCTTTGTATCTGCCTTAAGGTCATGGATCACTTTGCTGGAAAGTTCACTCTGCTATAGGTGctagttcacacacacacgccaccATCCCTGTTCTCTTTACACAGGTGCGTTCACTATCAGTCTTCCTCATTCATGTACAACACTTTTTAGCACAACTTTAACTGATTTGTACTCCGTGCCAGCTCGCTTGTTGATGcaggctttaaagggatagttcacccaaaactaagaATTCTGCCATTTACTCGTCCTTCAGTTGATTCACTTTTTTAGTTGTACGCAAAAAGTttctaaaaaatgttgaaaaactcTAGCCATCGCctttcattgtgttttttttctgcactGCTTTGAAAgtggatggttacaggtttctaacataatttgtgtttaacagcaaaAGGAAACACGCAAAGGTTTGGAATCAtttgatggtgagtaaatgtacatttttatgtgAACCATCCAATTATTTTACCATTGAGGGAAAAATAAGCATTGCGAGGCGTTTTGGTACGAAGTATACATATGTTAGACTAGTATGTGATTCTTCAGTGTTCCTCTCTTTCTCCAGCCATTGTAGAGCTGGTGTTTTCCATGAATTTATGCTGCACCTTTGTTCCAATCTCACCAATAGTGATCTgtttagtgtgtatgtgtgcatgactGTTGCCAAAAAGAGGAAAACTCCAAAAAAAACAATTCCTACAATCACTCAAtaggttttcttttttattattaagactaCATAGCTACTCTGTCTCATGTTTTTaggctgaagtgtgtgtgtttgtgtatgaaagAGAATGATCTCTCGTCTGTCTTACCGTTTACAGTGTTGCTCAAACCATCTACAGTTCGTTATGTTAGCATAAAACATGCCTGTTCTGCTCTTCATTACGTGTACGATCTGCTCTTTCATAAATCCAGTGTATTCACCTGTGATAGTACATTTACTCTCTCTACATGTCAGTCTCGATCATATCAGTTTTGAGAAAATGTGCACTCTAAATACTGTGACAAGCATCTATCTGGTGCCTTCCTCTTCTGTAGGTTTCTAGATGGCTGAAGCCATGCTTCTCGTAGCTCTCTGACATCAAGGCACTAATTTTTTTGCACTTAccttgtttttcattttgtttttgtacaCTTAATAAAGAATGTGCTTGGCTCTGA

Function

GO:

id name namespace
GO:0031103 axon regeneration biological_process
GO:0009214 cyclic nucleotide catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004113 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity molecular_function

KEGG:

id description
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-030521-29 Enables 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity. Acts upstream of or within axon regeneration. Located in cytosol. Is expressed in several structures, including axis; cardiovascular system; central nervous system; hindbrain neural plate; and neural tube. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 20; multiple sclerosis; and schizophrenia. Orthologous to human CNP (2',3'-cyclic nucleotide 3' phosphodiesterase).

Ensembl:

ensembl_id ENSDART00000104299

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049777 lncRNA upstream 277680 17653804 ~ 17655452 (+) False XLOC_025207
TCONS_00052633 lncRNA upstream 1049828 16875757 ~ 16883304 (+) True XLOC_025197
TCONS_00052632 lncRNA upstream 1055436 16875494 ~ 16877696 (+) False XLOC_025197
TCONS_00049755 lncRNA upstream 1056874 16874401 ~ 16876258 (+) False XLOC_025197
TCONS_00049734 lncRNA upstream 1700850 16229927 ~ 16232282 (+) True XLOC_025186
TCONS_00049802 lncRNA downstream 61816 18006111 ~ 18008388 (+) True XLOC_025214
TCONS_00052634 lncRNA downstream 96318 18040613 ~ 18047299 (+) False XLOC_025215
TCONS_00052635 lncRNA downstream 245314 18189609 ~ 18197126 (+) False XLOC_025218
TCONS_00049807 lncRNA downstream 245390 18189685 ~ 18197126 (+) True XLOC_025218
TCONS_00049812 lncRNA downstream 455022 18399317 ~ 18399843 (+) True XLOC_025220
TCONS_00049791 mRNA upstream 4899 17910569 ~ 17928233 (+) True XLOC_025212
TCONS_00049786 mRNA upstream 22757 17878124 ~ 17910375 (+) False XLOC_025211
TCONS_00049789 mRNA upstream 23998 17878466 ~ 17909134 (+) False XLOC_025211
TCONS_00049788 mRNA upstream 24034 17878181 ~ 17909098 (+) False XLOC_025211
TCONS_00049787 mRNA upstream 38900 17878181 ~ 17894232 (+) False XLOC_025211
TCONS_00049801 mRNA downstream 7495 17951790 ~ 18009316 (+) False XLOC_025214
TCONS_00049803 mRNA downstream 102481 18046776 ~ 18051045 (+) False XLOC_025215
TCONS_00049804 mRNA downstream 106372 18050667 ~ 18061783 (+) True XLOC_025215
TCONS_00049805 mRNA downstream 118576 18062871 ~ 18080924 (+) True XLOC_025216
TCONS_00049806 mRNA downstream 153405 18097700 ~ 18104658 (+) True XLOC_025217
TCONS_00049790 other upstream 35280 17878492 ~ 17897852 (+) True XLOC_025211
TCONS_00049769 other upstream 410205 17472147 ~ 17522927 (+) True XLOC_025202
TCONS_00049766 other upstream 471247 17395239 ~ 17461885 (+) True XLOC_025203
TCONS_00049749 other upstream 1204117 16724614 ~ 16729015 (+) False XLOC_025193
TCONS_00049746 other upstream 1254482 16668603 ~ 16678650 (+) False XLOC_025192
TCONS_00049819 other downstream 493190 18437485 ~ 18469009 (+) False XLOC_025223
TCONS_00049828 other downstream 811967 18756262 ~ 18769951 (+) True XLOC_025228
TCONS_00049837 other downstream 923540 18867835 ~ 18867952 (+) True XLOC_025233
TCONS_00049838 other downstream 948355 18892650 ~ 18892766 (+) True XLOC_025234
TCONS_00049839 other downstream 973166 18917461 ~ 18917583 (+) True XLOC_025235

Expression Profile

//