XLOC_033939 (creb3l1)


Basic Information

Item Value
gene id XLOC_033939
gene name creb3l1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 38897836 ~ 38954874 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066399
aaaaaagtaaaggtGGGTGTCACCGATGGGCGCAAAGAGCGAGAGTAGGGCGGGGACAGTATTGAATATGTATCAGTAGTTACCCCTTGGAGACTCAACACAGATGAATGATACAGTTTTGGAAGAACCACGCACCGCCACTTCGCTTTAATCACGTCCAATTTATCCGACACTTCCAGAGAAGTGCAAATGGGCAGACAATAGACGCTCAGTGGATGAAGGCGACCTGACAGTGCAGACGAGCGCAAGTCGCTTAAAGAAAGCCACATTAACTTACTGCTTGCGATTTTTCAATTGGATTTCAACAATTCTGCAACTTATCTCACCTTTGAGATATAGTAGTTTTTGCAAGCAGTTTTATCCACAGCCGATATGGACACCATATTGGACAACTTCGCTTCGGACAAACTTTTTCCCAATTCCAACCTGTTGGATCTCGAGGATCTGAATGAGAGCGATTTCTTATCCAATGTGCACTTCTCAGAGCAGATGGAGGACTTCTCCAATGACCTTTTCAACAGTTTTTTCGATGATCATCTGTTGGCGGAGAGGAACCCGTTGCTGGATATGGATCTGGACCCTCCAAACCCTGACATCCAGGCAGAACACAGTTACTCTCTCAGCGAGGACTCTGCCCCACAATCCCCCTCCATACCCATCAAATCAGACGACGATGCAGATTCAGAAGCAATGTGGTCATTTAGTCAGGATCTCACAGCCATTCTAGTGAAGCAGGAGCCCAGCCTGATGTCAGAGAACTGCCCGGAAACAGCGCCGCCTCTGGCCAACAGCAGCACCTGCTCACCGCCTCTCACTCTCGCTCCTCCGCCACAGAGGAACCACAGTGGAGAAAAGGGCTCCAAaggcctgagctcaaactctgtTCCTGCAATCAAAGCTGAGCCCCGCGAGGCGAACCAGTTCCTCAACGTGCCCTCAGAAGAGCATTTGCGGTTGCCGCCAACTCCTCCCAGCAGCCATGGCAGCGACAGTGATGGATCCCAGAGCCCACATTCACTGCCACCATTAAGCCCTGGCCACCTGCAGAGCCCACATTCACTGCCACCCTCCAGCCCTGCCCGGCTACAGGCCCGGACCTCCACTGCTATCTCCTCATCCCCTCTCCTCACCGCCCCGCACAAGCTGCAGGGAACATCAGGCCCTTTGATGCTGACAGAGGAAGAAAAGAGGACTTTGATCGCTGAGGGATATCCTGTCCCCAACAAACTACCGCTCACCAAAACCGAAGAGAAAGCACTCAAACGGGTGCGCAGGAAAATCAAAAATAAGATCTCTGCACAGGAAAGCCGCAGGAAGAAGAAGGAATATGTGGAGTGTTTGGAGAAGAAAGTGGAGAACTACACTTCAGAGAACAATGAACTCTGGAAGAAAGTTGAGACGCTTGAAAATGCCAACAGGTCTCTACTTCAGCAGCTACAAAGACTGCAGGCTCTAGTGAGCGGGAAAGTGCCTCGATCCTGCAAGATCGCCTCAACACAGACCGGAACCTGCCTCATGGTGGTGGCGCTGTGTTTTGTGTTGGTGCTGGGCTCGTTGGCCCCCTGCCTGCCCGAGCTCTCCCTCTACTCTTCCTCCTTATCCTCATCATCCTCACACACGGTGAAGTCTGCACCGCTGCCCTCAGGTGACCTCTACACCACCAGCCAGGtccGCTCCCGCAGCCTGCTCTTCTATGACGAGGGCGTCCCAGTGGAGGACGGCCACAGGGGCCTGCTGAGTGTGGAGAGGACGGAGGGCGTGCCGCGGCATGTACAGGACGTGAAAGACAGCAGCCACAAGCAGGATCATTCGGCTCTTGTGAGCAGGTACTTGAGCGAGGCTCAGCCGGAGTCTGCAAGCTACAGCAACACATCCGCGGCCCCCCTCCGTCCCCCCGAACCACACTACCACTCGAGAAAGCGGGATCCTGAGGGAGGAGCTGAATATTTCTAAGTCCTCTAGGTGGAGCAGCCTCCATCACACAGGCCTTCACTGACATCTGATGATCCTCGACCCGCATCGCTACCGTACAGATCCTGACCTGAACCAACAAGCCTCATGAGCACCTGCATTTAGCTTAAGAACTGACTGTGTCCATCCATACACTGAAACTCCCTTCACCAGCCAGCACTGAGTTTGAGGGCCacgagaagaagaaaaagagaggATGTGGGCGTTTGATAACGCTGCTCTGCTTTAGATAGACTTGACCTGCAGCTCCAAAAATTCACTTAACGCTTCACTCACAGAGTGTGGGAGGAAAAGTTCACGAgtctttgttttgatattcctaaACTGCCATGAGACTGTCCATTTACTACATATCCTTCTTTAAAAGACCCCAAagagcttttattattattattaatatgatttttttttagtctCTGAATGTTTTCCAGCAGGTGTAATCACAGGTGCCTGATGTACTTTGCAGCTTGGCAAAGCTTGCTTTGACAGGAGTTTCTTCCTCTGCCATTTTGGCTTGTTTTGGTCCCTAATAGGTTTAAGCTGGATTGCACTTGTTTTGCACTAGGAAAACTAATTGATTTAAAGTGCCTTTTTCACCTAGTCATATTTAAGATGCTCATAACCACGTATTTCCTTCTTAATCCTCAGCTTTCGTTTATTGATGTGTTTTATTCGATTTTTGGTTTTCTACTTTTTAAAAAGGCAGAGACTTTTGTactgaattaataattttatccATAATATATTCTAGTATTTGCAGCATCCAAAAAAGagcatatttattttatgcacaaaaaaatatgaaagttattgtgtgtttttttatagaAAGATGATGTAAGGTTTACATGATCTTGTTGTCATAACTGTTAAACAGTTTGTTTTCTGTTATCTTTATTTCTGTGTAAAGAAAGTTTTGTATATATGGAGAAAAATGAACAGGGGCGATcaaatcctgtgtgtgtgtttcaccatGTCCAGCAGACTTCTGCACATCCACATGAAAACGTTGGTTATAATCTGAAAACACACAGTTGTTACCTTTAAGAAAAGTGATATTATTTAAAGCACGTTCTTCTGATAATAGGATTTTAATGACTGTCTCATTGAGTGAACTGTTTGACCACTGTAAAATTCATCAGATAGCCTATCTGGAAGTTGATCGTGCAGTTTTGTAAAAAGTTTTCTAAAGGGAGACATTTTTTTAATGCTAGATATCAGTGTTTAGAAACAAATTGTTAATCATAAactctttgtttaattttttcttgGGTATTTTTTTTCATGACGTCCTCTCTACCATCAgccacaatatttttttcattgtacAGATAACCACTGATAGACATCATTTTATGTGCctgattaatttataataatataattggtCACTGTCGTTTTTTCTAACTCACTCCGTGGTATTTGTGCCATAAACATGTAGGTACCATCATATTTTCAGAGTGAAACTGAATTCAGTGTAGTTTCTCTAGTCTACCTTCATTTAATGACTGATTACAGCTTCTGTTGCAGTCATCTCAACCATTAATACGTTTCTCTAGTGTACAATGTTGAACTGGAAGTGTAAATCTGAATGTTTAAATGTAAACTTCATTGCACATAACTGTTCATTCAAACATGGAGCTGAATTTAATTGTCCAGATGACGACAGAGTTTATGCTTTAAATGTAATTGTTGCTGGTATCACATGTATCCCTTTTTTGTACATATTTCTGATGATAACGGTTGGTTGTAAATATGGAGGACGTATTTTTATATTTCCAATGCCTTTTGGTAATCACTGCGCGGCTTGGGTGGATTTGTATCCGTGTATGGATCTGGCTCTGTATGTATCTATGCTCTGAACCGCTTGCCTTTCCTGTCTAATCTAAAGTAGAGTTAGAATGAAGCAAAATACAAAATTTGCAGTTGCAA
>TCONS_00066400
ATGGACACCATATTGGACAACTTCGCTTCGGACAAACTTTTTCCCAATTCCAACCTGTTGGATCTCGAGGATCTGAATGAGAGCGATTTCTTATCCAATGTGCACTTCTCAGAGCAGATGGAGGACTTCTCCAATGACCTTTTCAACAGTTTTTTCGATGATCATCTGTTGGCGGAGAGGAACCCGTTGCTGGATATGGATCTGGACCCTCCAAACCCTGACATCCAGGCAGAACACAGTTACTCTCTCAGCGAGGACTCTGCCCCACAATCCCCCTCCATACCCATCAAATCAGACGACGATGCAGATTCAGAAGCAATGTGGTCATTTAGTCAGGATCTCACAGCCATTCTAGTGAAGCAGGAGCCCAGCCTGATGTCAGAGAACTGCCCGGAAACAGCGCCGCCTCTGGCCAACAGCAGCACCTGCTCACCGCCTCTCACTCTCGCTCCTCCGCCACAGAGGAACCACAGTGGAGAAAAGGGCTCCAAaggcctgagctcaaactctgtTCCTGCAATCAAAGCTGAGCCCCGCGAGGCGAACCAGTTCCTCAACGTGCCCTCAGAAGAGCATTTGCGGTTGCCGCCAACTCCTCCCAGCAGCCATGGCAGCGACAGTGATGGATCCCAGAGCCCACATTCACTGCCACCATTAAGCCCTGGCCACCTGCAGAGCCCACTCCTCACCGCCCCGCACAAGCTGCAGGGAACATCAGGCCCTTTGATGCTGACAGAGGAAGAAAAGAGGACTTTGATCGCTGAGGGATATCCTGTCCCCAACAAACTACCGCTCACCAAAACCGAAGAGAAAGCACTCAAACGGGTGCGCAGGAAAATCAAAAATAAGATCTCTGCACAGGAAAGCCGCAGGAAGAAGAAGGAATATGTGGAGTGTTTGGAGAAGAAAGTGGAGAACTACACTTCAGAGAACAATGAACTCTGGAAGAAAGTTGAGACGCTTGAAAATGCCAACAGGTCTCTACTTCAGCAGCTACAAAGACTGCAGGCTCTAGTGAGCGGGAAAGTGCCTCGATCCTGCAAGATCGCCTCAACACAGACCGGAACCTGCCTCATGGTGGTGGCGCTGTGTTTTGTGTTGGTGCTGGGCTCGTTGGCCCCCTGCCTGCCCGAGCTCTCCCTCTACTCTTCCTCCTTATCCTCATCATCCTCACACACGGTGAAGTCTGCACCGCTGCCCTCAGGTGACCTCTACACCACCAGCCAGGtccGCTCCCGCAGCCTGCTCTTCTATGACGAGGGCGTCCCAGTGGAGGACGGCCACAGGGGCCTGCTGAGTGTGGAGAGGACGGAGGGCGTGCCGCGGCATGTACAGGACGTGAAAGACAGCAGCCACAAGCAGGATCATTCGGCTCTTGTGAGCAGGTACTTGAGCGAGGCTCAGCCGGAGTCTGCAAGCTACAGCAACACATCCGCGGCCCCCCTCCGTCCCCCCGAACCACACTACCACTCGAGGTGA
>TCONS_00066401
AAGCTGCAGGGAACATCAGGCCCTTTGATGCTGACAGAGGAAGAAAAGAGGACTTTGATCGCTGAGGGATATCCTGTCCCCAACAAACTACCGCTCACCAAAACCGAAGAGAAAGCACTCAAACGGGTGCGCAGGAAAATCAAAAATAAGATCTCTGCACAGGAAAGCCGCAGGAAGAAGAAGGAATATGTGGAGTGTTTGGAGAAGAAAGTGGAGAACTACACTTCAGAGAACAATGAACTCTGGAAGAAAGTTGAGACGCTTGAAAATGCCAACAGGTCTCTACTTCAGCAGCTACAAAGACTGCAGGCTCTAGTGAGCGGGAAAGTGCCTCGATCCTGCAAGATCGCCTCAACACAGACCGGAACCTGCCTCATGtccGCTCCCGCAGCCTGCTCTTCTATGACGAGGGCGTCCCAGTGGAGGACGGCCACAGGGGCCTGCTGAGTGTG

Function

symbol description
creb3l1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within endoplasmic reticulum unfolded protein response and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in axial chorda mesoderm; notochord; shield; and tail bud. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 16. Orthologous to human CREB3L1 (cAMP responsive element binding protein 3 like 1).

GO:

id name namespace
GO:0030968 endoplasmic reticulum unfolded protein response biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0035497 cAMP response element binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030219-181 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within endoplasmic reticulum unfolded protein response and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in axial chorda mesoderm; notochord; shield; and tail bud. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 16. Orthologous to human CREB3L1 (cAMP responsive element binding protein 3 like 1).

Ensembl:

ensembl_id ENSDARG00000015793

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066399 False 3903 mRNA 0.45 12 38897836 38954874
TCONS_00066400 False 1479 mRNA 0.55 12 38898208 38950688
TCONS_00066401 True 452 mRNA 0.52 5 38936132 38950511

Neighbor

gene id symbol gene type direction distance location
XLOC_033938 zgc:110699 coding upstream 75449 38811800 ~ 38822387 (+)
XLOC_033937 harbi1 coding upstream 87130 38808027 ~ 38810706 (+)
XLOC_033936 arhgap1 coding upstream 112091 38762043 ~ 38785745 (+)
XLOC_033935 f2 coding upstream 137678 38750871 ~ 38760158 (+)
XLOC_033934 znf408 coding upstream 147639 38744924 ~ 38750197 (+)
XLOC_033940 dgkza coding downstream 7333 38962207 ~ 39157394 (+)
XLOC_033941 mdka coding downstream 211586 39166460 ~ 39178198 (+)
XLOC_033942 acp2 coding downstream 405923 39360797 ~ 39371386 (+)
XLOC_033943 tnni2b.2 coding downstream 430666 39385540 ~ 39394430 (+)
XLOC_033944 tnni2b.1 coding downstream 444873 39399747 ~ 39406763 (+)
XLOC_033931 BX957297.4 non-coding upstream 219304 38678418 ~ 38678532 (+)
XLOC_033929 BX957297.3 non-coding upstream 248307 38649136 ~ 38649529 (+)
XLOC_033922 NA non-coding upstream 551357 38315655 ~ 38346479 (+)
XLOC_033917 BX323797.2 non-coding upstream 650089 38245927 ~ 38247747 (+)
XLOC_033916 BX323797.1 non-coding upstream 661596 38229070 ~ 38236240 (+)
XLOC_033951 BX908792.2 non-coding downstream 758341 39713215 ~ 39713774 (+)
XLOC_033960 dre-mir-153a non-coding downstream 1530636 40485510 ~ 40485590 (+)
XLOC_033963 CU041319.1 non-coding downstream 1915757 40870631 ~ 40870748 (+)
XLOC_033965 NA non-coding downstream 2007854 40962728 ~ 41104337 (+)
XLOC_033966 AL772146.1 non-coding downstream 2158027 41112901 ~ 41113295 (+)

Expression


Co-expression Network