XLOC_033934 (znf408)


Basic Information

Item Value
gene id XLOC_033934
gene name znf408
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 38744924 ~ 38750197 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066387
TGGCTGGAAAACGATAATTTTCCCGGAGTTTTGGATGAATAAACAAGACCCTCGAGTGGCCAACGTGCAGAGGAAATATAGCCCTGATGTCTACAGTCACTGGGAGAAATGAAGGCTCTGGGAACAAGAGAGACTCCATCCACAGTGCCCTGAGGTCAGTACCACTAGGGCTCACCGTGGGTCCATCTCTGGCTGAAGATGAACAGCTGGGTCTGTGGTGTGTTGGGCGAGTGCTAAAGAAGGACACTCTGCTTGGTCTGGAGGAGCCTGGAGAAACAATCAGCAAAGAAAAAGAGGAGGGGTTGCAAAACGCAAGCCAGAGTGTGTACAAAAGAGAAATCTCTGATGAAGTGTGCTGGATGCAGTTTGCCTGCAGTGCTCAGAGTGCAGAAGAGAGCAATGTCAGTGTACTTAAAGTGGATGGAAGACTAGGCCTTAAGGTCTGTAGGGATATTCAGCCAGGAACAGAACTGCTCCTTTGGGAAAGTCATCCAGAAGCTGTGACTGAAGAAGAAACGCCTCAAGTAGAAACATGTGAAAACAGAGAACAAGATGAAGCTCTGGAGGCCAACACTTCAGATCACTTCTCAGGCTCTCCATATCTTCTTCAAAGAGTCACACAACAGGATACAAAATCTCCAGTTACAGTAAAAGGTCTTGTGCAGGACAATACAATCTGTAATTCCAATGTCCTTGAGCAGAATGGGATGGAAGAAAGTGAAGCAGAACATAGTGATGAACTTCCTGCAACAGAAGAGATTGAGAGCATCAATGTGAGTGCATCACAGGCCCAGACTTCATCACAATGTCTCACACCAGAAAGAAGCCTGAGAACCAGCTCTCGCCTCGCCTCTAAACCCCGAAAAGTGCACTCATCAGCCAAACGCATCTACAAACGACACGACCCAAAGAACAAGCCAGATCTAAGCAGCAAGAAAAAGCTCTTGAATAGCAAAGACGACTTAATGCAGCCGTTGACAGTTAAAGAAGAATCCAGCACAAAGCAAAACGGGCAGGATTTCCCTCCCTTCAATATCCGAGAGAGGAAGTACAAATGCGAGGAGTGTGATAAAAGCTTCTTTCAACTGTGCCATCTGAAGAAACACAAATACACTCATCAAAATCAGAAGCCATACACGTGCACAGAGTGTGGCAAGTCCTACAGCTCACATGAGAGCTTCCAAGCCCACCTGCTAATGCATCGTGGCCAGAGGCCCTTTAAGTGCGAGCAATGTGACAAAAGCTATGGCTTGAAACGGGACCTCAAGGAGCACCAGGTTCTCCACTCAGGAGAGAAACCGTTTGTCTGTGACATCTGTGGAAAAGCATTCGCTCGTCGGCCCTCGCTACGAGTCCACCGAGAGATCCATCGGACAAAAGAGCCAGACTACCAGGCTTTAAAGGTCAAGTGTCCAGAGTGCGACAAAGAGCTGGCCAATTCGGGTTCTTTGAGGAACCACATGCGTCTGCACACCGGAGAGCGACCGCACATCTGCCCGCACTGTAATAAGTGTTTTCGCCAACGTGGGAATCTGCAAGGACACATGCGCATCCACACAGGAGAAAAACCTTACAGGTGTGACCACTGCGACCTGAGATTTTCTCAAGTACCCGAACTGCGTCGGCATCTGATTTCACACACGGGTGAGGTGTATCTCTGTCCTGTCTGTGGTAAAGCTTTACGGGACCCTCACACGCTTCGCGCTCATGAACGGCTCCATACGGGAGACAGACCTTACAAATGTGAGCAATGCGGGAAAGGGTACACGATGGCAACCAAGCTACGACGCCACCTAAAGTCCCACCTGGAGGAGAAGCAACACGTTTGCCAGGTGTGCGGAGCAAAATACTCAATGATGCAGAGTCTACAGCGGCATCTGCAGCTGCACCAGCCAGACTCTGGACATGCACTGCCAACAAGAGGCAGACCCAAAAGGTTAGgccagaaagaagaagaagaacctGGTAGGACTGAGAGCAGCGGTTTGGAGGCAGGACAGGCTGTGGCATGCGCTCAAGCCTCAGACCACCTCACTATGGTGACCCACACAGAAGGGATCATTTTGGACTCTGGAACATACCAACATGGCACGATTGTTTTGGGAAAGGGAGCGGAGAAGGAGCTCGATCGGATTGAGCTCAGTGAGGACATTATTGAGATTTTTATTTCTGATGAAAACACCAATATAGTAGTCCAAGAACAGACTTCTAAAGGTTTAAGCCTTCAAGAACAGGAAGTTAATGCTGAATGCACAGTGGAGGCCAGTAGTGACTGTATTGTACTCCCAGAGCAAGATGCTAATAGTTGTTTGGTCATAATCCAAGGGCAGGATGGGCTAAGTTCAGTGGCAGAGACGGTAGAAATTGAGACAGTGGTATGATGGTAggattttccatttaaaatatgATCTATTCACATTATGTCACACAAAAAGGAAGAGAAATCGGAAATAAAATGATTCCCTTTTGAATTT

Function

symbol description
znf408 Predicted to enable metal ion binding activity. Acts upstream of or within retina vasculature development in camera-type eye. Predicted to be located in nucleus. Used to study exudative vitreoretinopathy. Human ortholog(s) of this gene implicated in exudative vitreoretinopathy 6 and retinitis pigmentosa 72. Orthologous to human ZNF408 (zinc finger protein 408).

GO:

id name namespace
GO:0061298 retina vasculature development in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-130530-589 Predicted to enable metal ion binding activity. Acts upstream of or within retina vasculature development in camera-type eye. Predicted to be located in nucleus. Used to study exudative vitreoretinopathy. Human ortholog(s) of this gene implicated in exudative vitreoretinopathy 6 and retinitis pigmentosa 72. Orthologous to human ZNF408 (zinc finger protein 408).

Ensembl:

ensembl_id ENSDARG00000036043

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066387 True 2474 mRNA 0.48 5 38744924 38750197

Neighbor

gene id symbol gene type direction distance location
XLOC_033933 syt13 coding upstream 7206 38685654 ~ 38737718 (+)
XLOC_033932 psmc3 coding upstream 59587 38680034 ~ 38685337 (+)
XLOC_033931 BX957297.4 coding upstream 66392 38678418 ~ 38678532 (+)
XLOC_033930 mtch2 coding upstream 66834 38667066 ~ 38678090 (+)
XLOC_033929 BX957297.3 coding upstream 95395 38649136 ~ 38649529 (+)
XLOC_033935 f2 coding downstream 674 38750871 ~ 38760158 (+)
XLOC_033936 arhgap1 coding downstream 11846 38762043 ~ 38785745 (+)
XLOC_033937 harbi1 coding downstream 57830 38808027 ~ 38810706 (+)
XLOC_033938 zgc:110699 coding downstream 61603 38811800 ~ 38822387 (+)
XLOC_033939 creb3l1 coding downstream 147639 38897836 ~ 38954874 (+)
XLOC_033922 NA non-coding upstream 398445 38315655 ~ 38346479 (+)
XLOC_033917 BX323797.2 non-coding upstream 497177 38245927 ~ 38247747 (+)
XLOC_033916 BX323797.1 non-coding upstream 508684 38229070 ~ 38236240 (+)
XLOC_033951 BX908792.2 non-coding downstream 963018 39713215 ~ 39713774 (+)
XLOC_033960 dre-mir-153a non-coding downstream 1735313 40485510 ~ 40485590 (+)
XLOC_033963 CU041319.1 non-coding downstream 2120434 40870631 ~ 40870748 (+)
XLOC_033965 NA non-coding downstream 2212531 40962728 ~ 41104337 (+)
XLOC_033966 AL772146.1 non-coding downstream 2362704 41112901 ~ 41113295 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_10827685_10831049 NA coding CI01000026 null 10826429 ~ 10831124 (+)