XLOC_033936 (arhgap1)


Basic Information

Item Value
gene id XLOC_033936
gene name arhgap1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 38762043 ~ 38785745 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066393
ACACCAAACTACACGGACCGCAAACCGGAAGTGCCGCTTGAAATTCGCAAGATTGGCAGAGTTGTGAAGACTTCAATAGGGAGCACTGAAAACTAGagGACCGTCATGTCCTCTGACCTGCTGGTGGATCTTCATGATGATCTGGGAGGAGACGACTCTCCTAGTGCTGCTCTGGACCAGCTCAAACTGGTACAGGACAAACAGTGGCCACCGGATGACCCTTCCAGCCTGAGCAAATCTGCTTCAGACATTAAAAGTCTTGGTGACACATCACATCTGCCCTGGGACGACCCCTTTTATGACATCGCCAGACATCAGATTGTGGAGGTGGCAGGTGACGATAACTTTGGCCGGAAGGTGATTGTCTTTAATGCTTGCCGTATGCCACCTCAACATCAGCTGGATCATCATAAACTTCTCATgTATTTGAAGCAAACCCTTGATAAGTATGTGGAGAGTGATTACACCCTCATCTACTTCCATCACGGTCTGACCAGTGAGAACAAGCCCTCACTCAGCTGGCTTCGGGATGCCTATCGGGAGTTCGACAGGAAGTATAAGAAAAATATCAAGGCACTGTACATCGTCCATCCCACCATGTTTATCAGAACTATCCTTATTCTTTTCAAGCCCATCATCAGCTTTAAGTTTGGCCGGAAGATAAATTACATCAACTATTTGAGTGAGCTGGAAGAGATTGTGAAGTGTGATCAGCTGGTGATCCCCAACAGAGTCCGAGAGTACGATGATAAGATCCGTCTGTCTCTGAAGCCGTCTGTTGTTCCTGGACCAATCTCTCCCCCTCGTAGTCCTCCTCTTCCTTTTCAGCAGTTTGGAGTCTCTCTGACAACATTGAAACACAGGGCAGCAGACTCAGAGGGAATTCCACTAGTCATGCGTGACACTATTGGATTCCTGCTGGAGAATGGTCTCCAGACAGAGGGAATATTCCGGCGTTCTGCTAATGTTTCTTTGGTGAAGGATGTTAAGGCAAAATATAACTCAGgagAGGAAGTGAATTTCTCTCAGCTGGAAGACGTTCACTTGGCAGCAGTGATCTTGAAGATGTTCCTCAGAGAACTGCCAGAGCCACTGCTCACTTATCAGCTGTACAACGACATTGTCAACTTCCACAATGTTGACATTGAGTCTCAGGCAGAAAGGATTCAGAACATGCTGATGTCTCTTCCCGATGAGAACTATGCATCACTGCGCTTCCTCGTACAGTTCCTTGCTCAGGTATCTGCTGAGAGCGAAATCAATAAGATGACCAATGCCAACCTGGCCGTTGTGTTTGGGCCCAACTTGCTGTGGGCGCAGGATGCTTCCATGACCCTCAGCGCTATCGGACCAATCAACAACTTCACCCGCGTCCTGCTCGACCTTCATCAGGACGTCTTCATCCAGTGAGGAGCAGGAGAACGTTTTCACTCCGTTTTGCTACGGTGTCCCATCCTTTGTGTCTCCCTCAGTATTGCCAAAAGCATGAGTATTTTAACTGGGTGAAGCtacgcaaaaaaaacaaaacaaaaaggatcCTGAAGGGCACAGAGCAGTCAAGCTTTCACTCAAACTTAGGCTGTGATCAAATTTCGACAATCGTCTCCTGTTCTCACGAAGCTGCTATCAGACATAATGGTACTGCGCAGGCACACAAGTTTTATACGGTCTTTTAGCAGAGACCCGATCAATAAACCAACAAagagattttatttttcattcttttgtgGTAGCTCATCCAAGAAAGTCAGATTTCAACTAAATGCACACGTTTTGTAAGCCATAGCTTGCACAAAGCTATGGACAAGTTTAAAGCACTACTACTCAAACTTGAAACACTTATTTTAAACACGCTTCTTATGTCATATAGTATGCGATGTTATGTATTGTCGCCAAGAGctttcatttatttgatcatatcattatattattattattattatttcctgtagtctctttcatcttttttttttgatggctCAGTGGTTCCAGGAACAGGGCAGATGCTTTTATGGCCAGCAAACATTTCCTGATGCTGAATCAGATTGCAAGAAGCACTCTGGTATTTATAATTCTTTGATCTTtgatcataatatatatatatatatatatatatatatatatatatatatatatatatatatatatattagggttgtcacaatactggaatttgacATTAATCGGTGCTGAAATTTTTCCAGACGTCCATTTATAGCGAACATTTAAGCGCTGTTTAGCCATTTTTAAACGCAGCTGAATTTGTTGTGTTCATGTCattaatgacaacagaaatgactgttatTGGCTGttaaggtcatcagttcaccgaactcactgctgtttactgtgtgtaaccacagatacagggacactggaaaATTTTAAAGCTGTGATGTTcacttatagacaaaccagctgatcgacgtgactttgaaacactcctgtgtccctgtatctgtggttgcgCTTAGTAAACAGTCATGAGTTCGGTGAACCGATGACATTCATAGCCaaccacagtcatttctgttgagcacgtgaacatgatggcaaatcagcgctgtttaagaaggTGCTCGACAAATGTTCccgtttttaaaattttagtaccTATTGGTATCGgaatttcagtatcgtgacaagccTAATATATCTAAATATCTCTGCCAACATTCCCCcttctttctgaatgtgtgtattttgtgtgtatgtgtggtctGTTGAGTACTGCTGTTGTATTAATAGCCCCAGACATATTTATTTTGGCCAAAGACTATATTGTTAAATGCTTGTGTGGTCAATTTTATTTGTAACTAAAAGACGTACTGCCTGTCGGGGACAGTGCCATTACGCAAGGGCGCATTAAAAGAGtcacctaaataaaaaaaataataatagtgaagaacaatttttaagacattttgtcCTGTTAGTAAAATTGTGCTTTTATCTGTGAGGAAACATATCAATGTGCGATTAGTTATTACCAGTGTCTtgagtacataaaaaaaaatgaattaaaaaaacacaagtacAGAAGCAGTTTTATCACAGGGCTCTGTTTGTGAAGGTCGACATTTCCCTTCGCATGAATTCCATGATTAATGGACACAAACGGTCTGGATTTCGCACAAAGGAGGCTTGTTTCATGGGTCTGACGTCCAAAAGAACCTTAAAGCAGGTACTTGGGTACTGATAATTTAGCACTAATGAGTTGTGTGTCATATGCCTTGATATTTGAATTGTAACTGTTTACTGTAAACGTCCCGTTCATGTCAATCCATCCGTTGAGCATTGACATGTGGACCAGTGGCTTAAATAGTTTTAGACAAGCTCCCTCAAACCCAAGTGTCTGTGTGCCTTACTGGAGTGAACTGGCGATGATCTATATTAGCTGTTGATTCCCCTTCTCTGGACAGATCTGTGAACTTTGTGCCATTTTGTTGTGTGCGTATCCAAACATCGACCTGTTTACCTGTGCTGTAGACGTGCATTTCTGGTTTCCAGGTGGAACTTTGCATTACTTCTTTTGTGAAGGTTCTTTTCTTCCATTTTGGCTGTTGAAATGTATTCTGTGCTTTTGAACTCTGTACTTTTGTATATCATGTTGTGAATTCAGAGTAATAAATTGATAGAGATGGTGTAccgtt
>TCONS_00066394
CATGTCCTCTGACCTGCTGGTGGATCTTCATGATGATCTGGGAGGAGACGACTCTCCTAGTGCTGCTCTGGACCAGCTCAAACTGGTACAGGACAAACAGTGGCCACCGGATGACCCTTCCAGCCTGAGCAAATCTGCTTCAGACATTAAAAGTCTTGGTGACACATCACATCTGCCCTGGGACGACCCCTTTTATGACATCGCCAGACATCAGATTGTGGAGGTGGCAGGTGACGATAACTTTGGCCGGAAGGTGATTGTCTTTAATGCTTGCCGTATGCCACCTCAACATCAGCTGGATCATCATAAACTTCTCATgTATTTGAAGCAAACCCTTGATAAGTATGTGGAGAGTGATTACACCCTCATCTACTTCCATCACGGTCTGACCAGTGAGAACAAGCCCTCACTCAGCTGGCTTCGGGATGCCTATCGGGAGTTCGACAGGAAGTATAAGAAAAATATCAAGGCACTGTACATCGTCCATCCCACCATGTTTATCAGAACTATCCTTATTCTTTTCAAGCCCATCATCAGCTTTAAGTTTGGCCGGAAGATAAATTACATCAACTATTTGAGTGAGCTGGAAGAGATTGTGAAGTGTGATCAGCTGGTGATCCCCAACAGAGTCCGAGAGTACGATGATAAGATCCGTCTGTCTCTGAAGCCGTCTGTTGTTCCTGGACCAATCTCTCCCCCTCGTAGTCCTCCTCTTCCTTTTCAGCAGTTTGGAGTCTCTCTGACAACATTGAAACACAGGGCAGCAGACTCAGAGGGAATTCCACTAGTCATGCGTGACACTATTGGATTCCTGCTGGAGAATGGTCTCCAGACAGAGGGAATATTCCGGCGTTCTGCTAATGTTTCTTTGGTGAAGGATGTTAAGGCAAAATATAACTCAGgagAGGAAGTGAATTTCTCTCAGCTGGAAGACGTTCACTTGGCAGCAGTGATCTTGAAGATGTTCCTCAGAGAACTGCCAGAGCCACTGCTCACTTATCAGCTGTACAACGACATTGTCAACTTCCACAATGTTGACATTGAGTCTCAGGCAGAAAGGATTCAGAACATGCTGATGTCTCTTCCCGATGAGAACTATGCATCACTGCGCTTCCTCGTACAGTTCCTTGCTCAGGTATCTGCTGAGAGCGAAATCAATAAGATGACCAATGCCAACCTGGCCGTTGTGTTTGGGCCCAACTTGCTGTGGGCGCAGGATGCTTCCATGACCCTCAGCGCTATCGGACCAATCAACAACTTCACCCGCGTCCTGCTCGACCTTCATCAGGACGTCTTCATCCAGTGA
>TCONS_00066395
CATTGTCAACTTCCACAATGTTGACATTGAGTCTCAGGCAGAAAGGATTCAGAACATGCTGATGTCTCTTCCCGATGAGAACTATGCATCACTGCGCTTCCTCGTACAGTTCCTTGCTCAGGTAAAAGAAATGATAATCGACAATAAGGGATTTTACTTTAACCACTGTGCAGTTTTGTGTCTGTTATGATGGTTTTAGTGTATTAATACAAACAgcttttttaatggaattttttttatgtttatattagtaTAAGATTTCTGTTTATATATCTAATAACCTTCAGGACAAAATTATCCCCATTGAAACCCATTTAATCTCAGTGTGGTTAAAGCAAAAAGTCTTATATTCTTTATTAATAGGCTCATTTTGTGTAAAAAGTTTCACAATTTacataaaatgtcaaatttaatatattgtgatatattttgTCCATTTC

Function

symbol description
arhgap1 Predicted to act upstream of or within signal transduction. Is expressed in female organism; musculature system; nervous system; and somite. Orthologous to human ARHGAP1 (Rho GTPase activating protein 1).

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-050417-305 Predicted to act upstream of or within signal transduction. Is expressed in female organism; musculature system; nervous system; and somite. Orthologous to human ARHGAP1 (Rho GTPase activating protein 1).

Ensembl:

ensembl_id ENSDARG00000024324

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066393 False 3653 mRNA 0.42 13 38762043 38785745
TCONS_00066394 False 1306 mRNA 0.48 12 38770167 38783502
TCONS_00066395 True 440 lncRNA 0.31 2 38779546 38780108

Neighbor

gene id symbol gene type direction distance location
XLOC_033935 f2 coding upstream 1885 38750871 ~ 38760158 (+)
XLOC_033934 znf408 coding upstream 11846 38744924 ~ 38750197 (+)
XLOC_033933 syt13 coding upstream 24325 38685654 ~ 38737718 (+)
XLOC_033932 psmc3 coding upstream 76706 38680034 ~ 38685337 (+)
XLOC_033931 BX957297.4 coding upstream 83511 38678418 ~ 38678532 (+)
XLOC_033937 harbi1 coding downstream 22282 38808027 ~ 38810706 (+)
XLOC_033938 zgc:110699 coding downstream 26055 38811800 ~ 38822387 (+)
XLOC_033939 creb3l1 coding downstream 112091 38897836 ~ 38954874 (+)
XLOC_033940 dgkza coding downstream 176462 38962207 ~ 39157394 (+)
XLOC_033941 mdka coding downstream 380715 39166460 ~ 39178198 (+)
XLOC_033929 BX957297.3 non-coding upstream 112514 38649136 ~ 38649529 (+)
XLOC_033922 NA non-coding upstream 415564 38315655 ~ 38346479 (+)
XLOC_033917 BX323797.2 non-coding upstream 514296 38245927 ~ 38247747 (+)
XLOC_033916 BX323797.1 non-coding upstream 525803 38229070 ~ 38236240 (+)
XLOC_033951 BX908792.2 non-coding downstream 927470 39713215 ~ 39713774 (+)
XLOC_033960 dre-mir-153a non-coding downstream 1699765 40485510 ~ 40485590 (+)
XLOC_033963 CU041319.1 non-coding downstream 2084886 40870631 ~ 40870748 (+)
XLOC_033965 NA non-coding downstream 2176983 40962728 ~ 41104337 (+)
XLOC_033966 AL772146.1 non-coding downstream 2327156 41112901 ~ 41113295 (+)

Expression


Co-expression Network