XLOC_033941 (mdka)


Basic Information

Item Value
gene id XLOC_033941
gene name mdka
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 39166460 ~ 39178198 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066409
AAACAGATTAAATTAGTTAGGGGGGAAACAAAGAGCCGGAGCAGCGCATAAAGGCGGATGCTGGAGAAGAGTGAACACAGCAAACTTCAGCCAGAGTTTCAGTGAGGGAACTTTCGACACAGAAAACAAAATGCGGGGCCTGTTTTCCACCCTCCTCGTGGTGCTGGTGGCCTTAATGATCGTGACATCAGAGGCTGGGAAAAACAAGAAAGAGAAGAATAAGGGAGGTAAGGGTGGTGCCGACTGTGCGGAGTGGCTCTATGGCAGCTGCGTGGCCAATAACGGCGACTGTGGCCAAGGCATGAGGGAGGGAACCTGCAATGAACAGACCAGGAAAGTCAAATGCAGAGTGCCATGCAACTGGAAGAAAGAATTTGGAGCTGACTGCAAGTATAAGTTTGGTAACTGGGGTGAATGTGACGCAGCCACGAGCACAAAGAGCCGCACTGGCACTCTGCAGAAGGCTCTCTTCAACGTCGAATGTCAGCAAACCGTCTCTGTGACCAAACCCTGCACCACCAAGGTCAAAAACAAACCCAAAGGAAAGAAAGGCAAGGGGAAAGGGAACTAAAGGGAGCGAGAGATCCAGAGGAGCAGTAAACACCCCGTGATCATCCGCCATCTAAACACGGCCTTTTATATCTCCACTCTGTGTTGTTCAGCACGAGCGGGACTCGCTCTACAGCCACAAACACATAGCTTTAGAAGACTATGACAGAGTAACAGCGGAGTGTTTGACACCTTACATGACTCTTTCATGCGCGAGGGCGATCGGAGAATAAAATGCCGTTGTTTATCGTGTAGTTCAGCCACTCCTCTGctgtttccccctctctctctttctctctaccATCTATCAGCTGTTCACACCTCAGGCCTCTCATTTGCTAAAGGACAACAATCAGTagaactcaatcaaacacatctattttattactgttttacttACAACATTTGGTTTTGTAAGATTTTGTAATTTACAGGATTATATTACTAGCGGGGTATAAAAGTAGCAATTGGAAAGTCAcccatttctttttttgtattctaaACTATAAAACTAAGGAGTGTTGTTTGAAATAAATGATTTCTCTTTTTCTATAAAAGTTGTAGTGTATGTAAAAGTGAAAATACCCCCTTTTTTCTTTGCTTTCATATTGACTGTTACTAACAGATCTAAGGGTGAAAGAGGGTTGTTGAAATGCATGGAGAGGTGACCGTCCCCTCTTGCGCAAACATTTTTTAtaagcatttaagaaaaaaaaaaaccctgaagtTTTGTTACTGAGCTTTGTGTGTTTTATGTAGTGTTAACAAAAGGTACATGAGTGATGAAAGTTCATTATTAAAGACACTTGAGCCCTCTGAATCTCTCGTTATGCAGACCGCATATGTTTCTTCATGAATATGCAAAGAATAATCATTCCTCTGTATTCCGGGTCAGTGCGCATGAGATCTTTATTAAGCTTTATGCAATAGAAaaagaaccacacacacacacttatgtacACTGGCTCTTTAAGGGCAGTGGTAGACAAGTCCATTAATACAGTGTGTTCATTCCATCAGGGTAATAATCGTTGACTTTGCCCTTCAGCTGGTACAGTTATATGAGAGCTTCTCCATCTAACCCTTaacaaatgacattttataaACATTCGAATAGAAATTTAAGAGACTGGGGCctatttataaaatgtgtgtacACAGAGATTCTTAGAGTGTACATGCAGCGAAATCCTTCACGACGTTAGGATTTATTAAAAAGAATGTGACTTCTTTTTACTTGAACATTAGTGGTTCTCAGTGTGTTTCTGTTGGTTAGCAAAGAAAGTTTTCTGTACGTAATTAGATTACTTAATTGTTCCCTCTAGGTTAGGAAAACATTCACAGAATATTCTTTAAGTTGTTATAATAACACTGCCCTGTAACATTCTGGAAAAAACGACTACTTACTGTAAATTGTTCTCGGAGCATTCTTTTCTGAGGAAACTTTCCTTGTGGTGGAGTTGGAGTATTTGAAAATCTTAAAGGATTCACTAAAACATCCTCTCAAGTTGTTCTAAACTTTtcttaatatcttttttttctgttgaacacaaaagacgatgtttcaaaaatgttgaaaacGGGTAACCAATGATCCATAGAAGGAACACAATtacttccaacattcttctaaatacatctgttttttttttcgtgtttatcagaagaaagaaaatcaagcaaaTAATGACAAcgttttcaattttgggtgaccTATACTTTTAACAGTTTTTGTCTCGCAACATGATCAagtaaaagatttaaaatattgacAGGCACTCTTTTATATGGTAAAGAATTTAATTAGATGGTCTTTTTAAGGTGGACTTctgcaaaatgtattttaatttatttgcgaTTTGTAGATATAGAGAAAGAGaatcatacatacacacagtttaGAAATGATCTTAGGTCAAAAATAAGATGGTTtgtatgttttataaataaaacattttataaatcag
>TCONS_00066410
ACAGATTAAATTAGTTAGGGGGGAAACAAAGAGCCGGAGCAGCGCATAAAGGCGGATGCTGGAGAAGAGTGAACACAGCAAACTTCAGCCAGAGTTTCAGTGAGGGAACTTTCGACACAGAAAACAAATTTACAGGCCTCCAGCACCATGCTGGTCACAATTTCTGTCAGAAAGCATTTGCTGTAACACTTGCCTAATGCTGTGCAGCACTGGTCtggtgacagtgtgtgtgtgtgtgtcatccaGCTGCACACGCCCATCAGAAAGAATGATGGGAGAGTGTGAGTGATTTATGACTGCTCGCCTCAGACCTGTGTTTGAGTAAATCTTGAGCCGAGGTGAACTTAAACAGCTGCTCCTGAATGCGGGGCCTGTTTTCCACCCTCCTCGTGGTGCTGGTGGCCTTAATGATCGTGACATCAGAGGCTGGGAAAAACAAGAAAGAGAAGAATAAGGGAGGTAAGGGTGGTGCCGACTGTGCGGAGTGGCTCTATGGCAGCTGCGTGGCCAATAACGGCGACTGTGGCCAAGGCATGAGGGAGGGAACCTGCAATGAACAGACCAGGAAAGTCAAATGCAGAGTGCCATGCAACTGGAAGAAAGAATTTGGAGCTGACTGCAAGTATAAGTTTGGTAACTGGGGTGAATGTGACGCAGCCACGAGCACAAAGAGCCGCACTGGCACTCTGCAGAAGGCTCTCTTCAACGTCGAATGTCAGCAAACCGTCTCTGTGACCAAACCCTGCACCACCAAGGTCAAAAACAAA
>TCONS_00066411
AGTTAGGGGGGAAACAAAGAGCCGGAGCAGCGCATAAAGGCGGATGCTGGAGAAGAGTGAACACAGCAAACTTCAGCCAGAGTTTCAGTGAGGGAACTTTCGACACAGAAAACAAAATGCGGGGCCTGTTTTCCACCCTCCTCGTGGTGCTGGTGGCCTTAATGATCGTGACATCAGAGGCTGGGAAAAACAAGAAAGAGAAGAATAAGGGAGGTAAGGGTGGTGCCGACTGTGCGGAGTGGCTCTATGGCAGCTGCGTGGCCAATAACGGCGACTGTGGCCAAGGCATGAGGGAGGGAACCTGCAATGAACAGACCAGGAAAGTCAAATGCAGAGTGCCATGCAACTGGAAGAAAGAATTTGGAGGACAACAATCAGTagaactcaatcaaacacatctattttattactgttttacttACAACATTTGGTTTTGTAAGATTTTGTAATTTACAGGATTATATTACTAGCGGGGTATAAAAGTAGCAATTGGAAAGTCAcccatttctttttttgtattctaaACTATAAAACTAAGGAGTGTTGTTTGAAATAAATGATTTCTCTTTTTCTATAAAA
>TCONS_00066412
GCGCATAAAGGCGGATGCTGGAGAAGAGTGAACACAGCAAACTTCAGCCAGAGTTTCAGTGAGGGAACTTTCGACACAGAAAACAAAATGCGGGGCCTGTTTTCCACCCTCCTCGTGGTGCTGGTGGCCTTAATGATCGTGACATCAGAGGCTGGGAAAAACAAGAAAGAGAAGAATAAGGGAGGTAAGGGTGGTGCCGACTGTGCGGAGTGGCTCTCTTCAACGTCGAATGTCAGCAAACCGTCTCTGTGACCAAACCCTGCACCACCAAGGTCAAAAACAAACCCAAAGGAAAGAAAGGCAAGGGGAAAGGGAACTAAAGGGAGCGAGAGATCCAGAGGAGCAGTAAACACCCCGTGATCATCCGCCATCTAAACACGGCCTTTTATATCTCCACTCTGTGTTGTTCAGCACGAGCGGGACTCGCTCTACAG
>TCONS_00066413
TAAAGGCGGATGCTGGAGAAGAGTGAACACAGCAAACTTCAGCCAGAGTTTCAGTGAGGGAACTTTCGACACAGAAAACAAAATGCGGGGCCTGTTTTCCACCCTCCTCGTGGTGCTGGTGGCCTTAATGATCGTGACATCAGAGGCTGGGAAAAACAAGAAAGAGAAGAATAAGGGAGGTAAGGGTGGTGCCGACTGTGCGGAGTGGCTCTATGGCAGCTGCGTGGCCAATAACGGCGACTGTGGCCAAGGCATGAGGGAGGGAACCTGCAATGAACAGACCAGGAAAGTCAAATGCAGAGTGCCATGCAACTGGAAGAAAGAATTTGGAGCTGACTGCAAGTATAAGTTTGGTAACTGGGGTGAATGTGACGCAGCCACGAGCACAAAGAGCCGCACTGGCACTCTGCAGAAGGCTCTCTTCAACGTCGAATGTCAGCAAACCGTCTCTGTGACCAAACCCTGCACCACCAAGGTCAAAAACAAACCCAAAGAAAGGCAAGGGGAAAGGGAACTAAAGGGAGCGAGAGATCCAGAGGAGCAGTAAACACCCCGTGATCATCCGCCATCTAAACACGGCCTTTTATATCTCCACTCTGTGTTGTTCAGCACGAGCGGGACTCGCTCTACAGCCACAAACACATAGCTTTAGAAGACTATGACAGAGTAACAGCGGAGTGTTTGACACCTTACATGACTCTTTCATGCGCGAGGGCGATCGGAGAATAAAATGCCGTTGTTTATCGTGTAGTTCAGCCACTCCTCTGctgtttccccctctctctctttctctctaccATCT

Function

symbol description
mdka Predicted to enable growth factor activity. Acts upstream of with a positive effect on positive regulation of mitotic cell cycle. Acts upstream of or within neural tube formation; regulation of cell cycle; and sensory epithelium regeneration. Located in Golgi apparatus. Is expressed in several structures, including brain; eye; neural tube; neuroectoderm; and paraxial mesoderm. Human ortholog(s) of this gene implicated in brain ischemia. Orthologous to human MDK (midkine).

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0001841 neural tube formation biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0008083 growth factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990621-1 Predicted to enable growth factor activity. Acts upstream of with a positive effect on positive regulation of mitotic cell cycle. Acts upstream of or within neural tube formation; regulation of cell cycle; and sensory epithelium regeneration. Located in Golgi apparatus. Is expressed in several structures, including brain; eye; neural tube; neuroectoderm; and paraxial mesoderm. Human ortholog(s) of this gene implicated in brain ischemia. Orthologous to human MDK (midkine).

Ensembl:

ensembl_id ENSDARG00000036036

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066409 False 2516 mRNA 0.39 5 39166460 39178198
TCONS_00066410 False 767 mRNA 0.50 5 39166462 39174557
TCONS_00066411 False 579 mRNA 0.43 4 39166474 39176788
TCONS_00066412 False 434 mRNA 0.51 5 39166503 39176367
TCONS_00066413 True 802 mRNA 0.50 5 39166508 39176537

Neighbor

gene id symbol gene type direction distance location
XLOC_033940 dgkza coding upstream 9066 38962207 ~ 39157394 (+)
XLOC_033939 creb3l1 coding upstream 211586 38897836 ~ 38954874 (+)
XLOC_033938 zgc:110699 coding upstream 344073 38811800 ~ 38822387 (+)
XLOC_033937 harbi1 coding upstream 355754 38808027 ~ 38810706 (+)
XLOC_033936 arhgap1 coding upstream 380715 38762043 ~ 38785745 (+)
XLOC_033942 acp2 coding downstream 182599 39360797 ~ 39371386 (+)
XLOC_033943 tnni2b.2 coding downstream 207342 39385540 ~ 39394430 (+)
XLOC_033944 tnni2b.1 coding downstream 221549 39399747 ~ 39406763 (+)
XLOC_033945 lsp1b coding downstream 231982 39410180 ~ 39440071 (+)
XLOC_033946 tnnt3b coding downstream 266645 39444843 ~ 39460363 (+)
XLOC_033931 BX957297.4 non-coding upstream 487928 38678418 ~ 38678532 (+)
XLOC_033929 BX957297.3 non-coding upstream 516931 38649136 ~ 38649529 (+)
XLOC_033922 NA non-coding upstream 819981 38315655 ~ 38346479 (+)
XLOC_033917 BX323797.2 non-coding upstream 918713 38245927 ~ 38247747 (+)
XLOC_033916 BX323797.1 non-coding upstream 930220 38229070 ~ 38236240 (+)
XLOC_033951 BX908792.2 non-coding downstream 535017 39713215 ~ 39713774 (+)
XLOC_033960 dre-mir-153a non-coding downstream 1307312 40485510 ~ 40485590 (+)
XLOC_033963 CU041319.1 non-coding downstream 1692433 40870631 ~ 40870748 (+)
XLOC_033965 NA non-coding downstream 1784530 40962728 ~ 41104337 (+)
XLOC_033966 AL772146.1 non-coding downstream 1934703 41112901 ~ 41113295 (+)

Expression


Co-expression Network