Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00066411 |
| length | 579 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 4 |
| gene id | XLOC_033941 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007118.7 |
| NCBI id | CM002891.2 |
| chromosome length | 74282399 |
| location | 39166460 ~ 39178198 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051726 | regulation of cell cycle | biological_process |
| GO:0001841 | neural tube formation | biological_process |
| GO:0070654 | sensory epithelium regeneration | biological_process |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0008083 | growth factor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-990621-1 | Predicted to enable growth factor activity. Acts upstream of with a positive effect on positive regulation of mitotic cell cycle. Acts upstream of or within neural tube formation; regulation of cell cycle; and sensory epithelium regeneration. Located in Golgi apparatus. Is expressed in several structures, including brain; eye; neural tube; neuroectoderm; and paraxial mesoderm. Human ortholog(s) of this gene implicated in brain ischemia. Orthologous to human MDK (midkine). |
| ensembl_id | ENSDART00000173877 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00066395 | lncRNA | upstream | 386366 | 38779546 ~ 38780108 (+) | True | XLOC_033936 |
| TCONS_00066390 | lncRNA | upstream | 412987 | 38750916 ~ 38753487 (+) | False | XLOC_033935 |
| TCONS_00066392 | lncRNA | upstream | 413946 | 38752106 ~ 38752528 (+) | True | XLOC_033935 |
| TCONS_00066382 | lncRNA | upstream | 476062 | 38688249 ~ 38690412 (+) | False | XLOC_033933 |
| TCONS_00066421 | lncRNA | downstream | 227457 | 39404245 ~ 39406761 (+) | False | XLOC_033944 |
| TCONS_00066422 | lncRNA | downstream | 227481 | 39404269 ~ 39406453 (+) | True | XLOC_033944 |
| TCONS_00066424 | lncRNA | downstream | 233397 | 39410185 ~ 39414434 (+) | False | XLOC_033945 |
| TCONS_00066427 | lncRNA | downstream | 237114 | 39413902 ~ 39418785 (+) | False | XLOC_033945 |
| TCONS_00066430 | lncRNA | downstream | 241808 | 39418596 ~ 39419388 (+) | False | XLOC_033945 |
| TCONS_00066403 | mRNA | upstream | 9080 | 38962459 ~ 39157394 (+) | False | XLOC_033940 |
| TCONS_00066405 | mRNA | upstream | 9080 | 39011355 ~ 39157394 (+) | False | XLOC_033940 |
| TCONS_00066406 | mRNA | upstream | 12769 | 39011852 ~ 39153705 (+) | False | XLOC_033940 |
| TCONS_00066407 | mRNA | upstream | 12769 | 39054478 ~ 39153705 (+) | False | XLOC_033940 |
| TCONS_00066408 | mRNA | upstream | 12769 | 39079071 ~ 39153705 (+) | True | XLOC_033940 |
| TCONS_00066414 | mRNA | downstream | 184009 | 39360797 ~ 39371386 (+) | True | XLOC_033942 |
| TCONS_00066415 | mRNA | downstream | 208752 | 39385540 ~ 39392862 (+) | False | XLOC_033943 |
| TCONS_00066416 | mRNA | downstream | 210194 | 39386982 ~ 39392861 (+) | False | XLOC_033943 |
| TCONS_00066417 | mRNA | downstream | 212485 | 39389273 ~ 39394430 (+) | True | XLOC_033943 |
| TCONS_00066418 | mRNA | downstream | 222959 | 39399747 ~ 39405794 (+) | False | XLOC_033944 |
| TCONS_00066378 | other | upstream | 483257 | 38680039 ~ 38683217 (+) | False | XLOC_033932 |
| TCONS_00066376 | other | upstream | 487942 | 38678418 ~ 38678532 (+) | True | XLOC_033931 |
| TCONS_00066373 | other | upstream | 516945 | 38649136 ~ 38649529 (+) | True | XLOC_033929 |
| TCONS_00066366 | other | upstream | 639108 | 38511264 ~ 38527366 (+) | True | XLOC_033925 |
| TCONS_00066360 | other | upstream | 742465 | 38401094 ~ 38424009 (+) | False | XLOC_033924 |
| TCONS_00066429 | other | downstream | 241774 | 39418562 ~ 39429027 (+) | False | XLOC_033945 |
| TCONS_00066460 | other | downstream | 514244 | 39691032 ~ 39695827 (+) | True | XLOC_033949 |
| TCONS_00066462 | other | downstream | 536427 | 39713215 ~ 39713623 (+) | False | XLOC_033951 |
| TCONS_00066463 | other | downstream | 536701 | 39713489 ~ 39713774 (+) | True | XLOC_033951 |
| TCONS_00066478 | other | downstream | 1277924 | 40454712 ~ 40460332 (+) | False | XLOC_033959 |
