RNA id: TCONS_00066407


Basic Information

Item Value
RNA id TCONS_00066407
length 3839
RNA type mRNA
GC content 0.50
exon number 34
gene id XLOC_033940
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 38962207 ~ 39157394 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTCTACCTTCTTTCTGTCTCTATTctcctcttctctctctctctttctcttattTTCATTCTTCTCTAAAAGTTATCTGGTGAGAGAACTGGAGAAGACGTTTGGATGATTTTGACCCTGCCATCAGCGTCGCTTGAGGAAGACATCAGTCGTAGCTTCTTCTGTCCCAATGGATGCTTTGTTCAACCTGCGTTTCAGGCGGAAAGCCGTTGAGCCAAGCGGGCGCAGGCGCTCCAGCGTGTCACTTCCAGCAAGCAAAGCACGTCGGCGCTCCAGCGCAGGTCTGCCTTCAGCAGGACTGGCCCACAGACGCAGATCCAGTGCTCAGCTTCAAATCGGCAGCATACAGCCAGGGCTCGTACTACACAGAAGAGGACACTTTACGAGGAGAAAATCAAGTGGTGGGACAGCCTGCCTGACTCCGCGGTTCGCTATCCGCCGAAGACAGGCTGCCAAACACCGCAGCATTCACGCCCAACTCCTAGGACCATCGCTGCTCCTGGCGAGTGTAGTGCAGATGAGTGAAGACCATGAACCTGAGGATAAGAGTGCAGAAGAATACTCCTCTCTCTCTGATACTGACTGTAGCCAAGATGAGCACGAGCAAACAGGCATGGACTTTGAAACAGAGTCTGATAAGTGTCTGACATGGCTGGCCCAGGGTTTGTTGGTGGGAGAAAGTATTCAGCCCCGGCCTCTTATCCGTGCACCTCGGTGTCTGAGGCGAAACTCCTCACACCTTCTCCCCGCTGAGGCCGTTTACAGAAGCCCAGCTTCTTATGGGCTGTATGGCCGTTACCGTAGGACCAGTCAGGTGCATAATATGGGTGGATTGTGGGCAGGGAAGAGAAGTTCTCTCGCAGCTCGTGGATCAGTTGCACTGTACAGGACGAGCCCCCCTTGCTGGCCAGATCTCAGTGTGTCGCACACACTTCAGGGAACTTACTACAACCCACAGATTGACACATGGAGTGGGTTCCTCTCGAAGGCTATTGCCAAGTCCGGTCTCCAGCACCTCTCATGCCAGCCCAGTGCTGCAGTGTTAGCCAAAGGGGAAACGGACAGAGAAATACGCAACACAGTAGACTGGAGTGAATCAGCTGTATACGGAGAGCACATCTGGTTTGAGACGAATGTCTCGGGGGACTTCTGTTACGTTGGAGAACAGCACTGTTACGCCAAGTCACTGcaAAAGTCTGTTGCTCGGAAAAAGTGTGCGGCTTGCAAGATCGTAGTTCACTCTATCTGCATTGAACAGCTGGAGAAGataaacttCAGATGTAAACCGTCTTTCAGGGAGTCAGGATCACGGAACATCCGAGAGCCTGCAATAGTGCGACACCACTGGGTCCATCGGAGAAGACAAGAGGGCAAatgcaaacagtgtggaaagGGGTTTCAGCAGAAATTTGCCTTTCACAGTAAAGAGATTGTAGCCATCAGCTGCTCCTGGTGCAAACAAGCATATCATAATAAGGTGACATGCTTTATGCTGCAGCAGATAGAAGAACCATGTTCATTAGGAGCTCATGCCGCTGTAATAGTACCTCCTACTTGGATCATACGGGTTCGCCGAcctcagtcCTCACTAAAgtcaagcaaaaagaaaaaacggaCATCTTTCAAACGTAAATCCAGCAAGAAAGGAGCAGAGGAGGCACGATGGAAGCCTTTTATAGTGAGACCCATTCCCTCCCAACTCATGAAGCCACTGCTAGTGTTTGTAAATCCAAAGAGTGGAGGAAACCAGGGAGCTAAAATCATCCAGACCTTTCTTTGGTATCTAAACCCTCGGCAGGTGTTTGATCTAAGTCAAGGAGGTCCTCAGGAAGGcttGGAAATGTATCGCAAGGTTCACAACTTGAGAATTTTGGCCTGTGGGGGGGATGGCACGGTGGGCTGGATCTTATCTGCACTTGATCAGCTGCAATTAAACCCTTCTCCTGCTGTGGCCGTACTTCCCCTGGGCACAGGAAATGACCTTGCTAGGACGCTAAACTGGGGTGGGGGCTACACAGATGAACCTCTGAGTAAAATCCTGTCTCATGTGGAGGATGGGAATATTGTACAGCTGGATCGGTGGAATCTTGTTGTGAAGCCCAACCCAGAGGCAGGACCAGAGGAAAGAGACGAGCAGGTGACGGACAAGCTCCCTCTAGACGTCTTCAATAACTACTTCAGCCTTGGatttgatgctcatgtgactttagaGTTCCACGAATCTCGAGAGGCTAATCCTGAGAAATTTAACAGCCGGTTCAGAAACAAAATGTTCTATGCAGGGACAGCGTTTTCTGATTTCTTGATGGGCAGCTCCAAAGACCTGGCTAAGCACATCAAAGTAGTCTGTGACGGCACAGATTTAACCTCAAAGGTCCAGGATTTGAAGCTGCAATGCCTGGTCTTCCTAAATATCCCCAGGTACTGTGCGGGCACAATGCCATGGGGCAATCCGAGTGAGCATCATGACTTTGAGCCTCAGCGTCATGATGATGGCTGCATTGAGGTTATTGGATTCACAATGACATCACTGGCCACACTGCAGGTCGGAGGTCACGGTGAGAGGTTAAATCAGTGTCGCGAAGTCACCCTCACCACCTTTAAGTCAATCCCCATGCAGGTGGACGGGGAGCCTTGTAAACTAGCACCATCTGTTATTCACATTTCTTTGCGAAACCAGGCCAACATGGTGCAGAAAACCAAGAGACGTACATCTATACCACTGCTAAACGATCAGCAACCGTTTCCAGAACGACTACGGATCAGAGTGAGCCGTATCAGCATGCATGATTATGAAGCTTTGCACTACGACAAGGAGAAGCTCAAAGAAGCTTCGATTCCACTGGGTCTCATCGTTGTCCCTGGAGACAGTGATTTGGAAACCTGCCGAGCTCACATCGAGAGACTACAGGAGGAAGGTGACGGGAGCAAATCAAAGGCTTTGTCGTCTCAGAGGCTATCACCGAAATGGTGCTTTCTCGACTCTACAACTGCTGATCGATTCTACAGGATTGATCGAGCTCAAGAGCATCTCAACTACGTGACTGAAATTTCTCAGGATGAGCTGTTTGTTTTGGACCCAGAGCTGGTGGTCACAGAGACTGTTAGCACATCACCTGGCATGCCAGACCTGGTGGACTCTGGTGAAGTCCAGTCCGATCCACACAAATTTGCCTTTCCGTCATCCTCTTCTTCACCACCAAACACACCTGGACCTAGGGTTGCAGAGCTGCAAAGGAAGCGTGTTTCCAGTGACAGTTCGGTGGCAGAAGCACTTGCACACAGTGACTCGCTCAGATCAGCCAAGCCAGCTCTCTGCAGaGCTGGGGGTGTTCATCGCTCAAATACAACCGCAGCAGATTTCAAACCTACCAGCAGGTTTGAGAAGAGCGCTGTGAACAATGCCAACTCTGTGTCAGTGGACAGTCTAATTGAATGTGTGAAAAAGAAGGACCATCAGAAGTTGAAGGAGCTGCATAAGAAAGGGGCCGACCTGTGTGTGCAGGACCCTGCTGGACGGACCCTATTGCACTATGCTGTGGAAGTGGGCAGCAAGGAGATTGTCAAATACATCATTGATAATGCACCCACCGATATCCTGGATGTAACAGAGAAAGAAAATGGAGAGACTGTGTTGCACAAAGCAGCCTCGCTGTGTCATAGGACAATCTGTCATTACCTAGTGGAAGCAGGAGCATCTCTTATGAAGACAGACTTACAGGGTGACACTCCGAAGCATCGTGCCGAGAAGGCGAAAGATGCTGAACTTGCGGCATATCTTGAAAACCGCCAGCACTACCAAATGATCCAGCGTGAGGACCAGGAGACTGCAGTTTGA

Function

GO:

id name namespace
GO:0051966 regulation of synaptic transmission, glutamatergic biological_process
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0046834 lipid phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0046339 diacylglycerol metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0046486 glycerolipid metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003951 NAD+ kinase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0004143 diacylglycerol kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-111104-3 Predicted to enable diacylglycerol kinase activity. Predicted to be involved in several processes, including diacylglycerol metabolic process; lipid phosphorylation; and regulation of glutamatergic synaptic transmission. Predicted to act upstream of or within phosphorylation and protein kinase C-activating G protein-coupled receptor signaling pathway. Predicted to be active in nucleus. Orthologous to human DGKZ (diacylglycerol kinase zeta).

Ensembl:

ensembl_id ENSDART00000173825

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00066395 lncRNA upstream 274370 38779546 ~ 38780108 (+) True XLOC_033936
TCONS_00066390 lncRNA upstream 300991 38750916 ~ 38753487 (+) False XLOC_033935
TCONS_00066392 lncRNA upstream 301950 38752106 ~ 38752528 (+) True XLOC_033935
TCONS_00066382 lncRNA upstream 364066 38688249 ~ 38690412 (+) False XLOC_033933
TCONS_00066421 lncRNA downstream 250540 39404245 ~ 39406761 (+) False XLOC_033944
TCONS_00066422 lncRNA downstream 250564 39404269 ~ 39406453 (+) True XLOC_033944
TCONS_00066424 lncRNA downstream 256480 39410185 ~ 39414434 (+) False XLOC_033945
TCONS_00066427 lncRNA downstream 260197 39413902 ~ 39418785 (+) False XLOC_033945
TCONS_00066430 lncRNA downstream 264891 39418596 ~ 39419388 (+) False XLOC_033945
TCONS_00066399 mRNA upstream 99604 38897836 ~ 38954874 (+) False XLOC_033939
TCONS_00066400 mRNA upstream 103790 38898208 ~ 38950688 (+) False XLOC_033939
TCONS_00066401 mRNA upstream 103967 38936132 ~ 38950511 (+) True XLOC_033939
TCONS_00066398 mRNA upstream 232091 38811800 ~ 38822387 (+) True XLOC_033938
TCONS_00066396 mRNA upstream 243772 38808027 ~ 38810706 (+) False XLOC_033937
TCONS_00066409 mRNA downstream 12755 39166460 ~ 39178198 (+) False XLOC_033941
TCONS_00066410 mRNA downstream 12757 39166462 ~ 39174557 (+) False XLOC_033941
TCONS_00066411 mRNA downstream 12769 39166474 ~ 39176788 (+) False XLOC_033941
TCONS_00066412 mRNA downstream 12798 39166503 ~ 39176367 (+) False XLOC_033941
TCONS_00066413 mRNA downstream 12803 39166508 ~ 39176537 (+) True XLOC_033941
TCONS_00066378 other upstream 371261 38680039 ~ 38683217 (+) False XLOC_033932
TCONS_00066376 other upstream 375946 38678418 ~ 38678532 (+) True XLOC_033931
TCONS_00066373 other upstream 404949 38649136 ~ 38649529 (+) True XLOC_033929
TCONS_00066366 other upstream 527112 38511264 ~ 38527366 (+) True XLOC_033925
TCONS_00066360 other upstream 630469 38401094 ~ 38424009 (+) False XLOC_033924
TCONS_00066429 other downstream 264857 39418562 ~ 39429027 (+) False XLOC_033945
TCONS_00066460 other downstream 537327 39691032 ~ 39695827 (+) True XLOC_033949
TCONS_00066462 other downstream 559510 39713215 ~ 39713623 (+) False XLOC_033951
TCONS_00066463 other downstream 559784 39713489 ~ 39713774 (+) True XLOC_033951
TCONS_00066478 other downstream 1301007 40454712 ~ 40460332 (+) False XLOC_033959

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_11012960_11021926.mRNA True 3555 mRNA 0.45 14 CI01000026 11011340 ~ 11021926 (+)