XLOC_033955 (MAF1)


Basic Information

Item Value
gene id XLOC_033955
gene name MAF1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 40081630 ~ 40092016 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066468
GCTTTCCCGGGGTCCATGCTCAGCTGAAGACGGAGAGATTCGTCTCCTGCTCCGGGGAGACATAGCGGCCGTATACCGGAATGGCATACCGACACCTTCACCGACATCAAAACAGTGCTGCATGCCGACTGCGAGGCCTCGTGGCCGAGCTATGAAGCTTTTAGAGAATTCCCGTTTTGAGGCTTTGAGCTCTCAGCTGTGTGTTGAAACTGGAGATGCTCAGATCATTGGCAGgattgaGAGTTACTCATGTAAGATGGCTGGTGATGACAAGCACATGTTTAAGCAGTTCTGTCAGGAAGGAGAGCCTCACGTACTGGAGGCTCTGTCACCCCCTCAATCCAGCAGTGCCCCGAGTCCAAACCTATTGGGGAAGAGTGGGGAAGACGCAGAGAACCCACTGAGCGATAAATGTTGCAGGAAGACTTTGTTCTACCTTATCACCACCCTGAACGAATCGTTCCGGCCTGATTACGATTTCAGTGCGGCCCGTGCCCATGAGTTCAGCCGAGAGCCAAGTGCTAACTGGGTGGCCAACTCTGTAAACAGCAGCCTTTATTCTGCTGTGGGGGAGCAGTTTAACACTTTAGGCCCAGAACTGTGGACTGCCATTGACCAAGAGATAAACCTGCAGGGCTGTGACATCTACAGCTACAACCCAGACCTGGACTCTGATCCCTTTGGTGAGGAAGGAAGCCTGTGGTCCTTTAACTACTTCTTTTACAACAAGAAGCTTAAACGCATTCTATTCTTCACATGCCGCTCAGTCAG
>TCONS_00066469
ACTGTTTTCGGATATAGTGACTGGTGTTGGATGCGGTCGATGTTTTCAAGGATATAAGACAAGAAACAGGAGAAATATTCTCTAACGATTGGGTACAAGCGCGAATTGAAGCGTCGCTCGAGCAATTCGCGCCATTTAAAGCGACGCTTATCTCGTTTTCACAAGGTACATTTGTTGTAGGTCAAATAAGGGGATGCTGCTGCTGCAGTCGCTGTCTTGGAGCTCGACACAATCGCTGGgttttatgttaagtttagtcGTAAGTAGAGGCTTTGAGATAAGAGAAAACGCCTGCAGAATATGTCAATCTCGACCGAGTCATTTTCACATATACTGAAATTACATTGTGCAACTTATTTGATATACAATCAACTGCGCGCGTAGACGCCAGAGCATTTGAGCTCGTTTTGTGTTGTTAAAAGAGCAGCTCTGTAAACCAAACCGCCCGTGAGCCCTTCTTTCcccaaatacatatttatatatacattgtttTATCTGGAAGTGGGTGTACAACAGGAAAGCTATGAAGCTTTTAGAGAATTCCCGTTTTGAGGCTTTGAGCTCTCAGCTGTGTGTTGAAACTGGAGATGCTCAGATCATTGGCAGgattgaGAGTTACTCATGTAAGATGGCTGGTGATGACAAGCACATGTTTAAGCAGTTCTGTCAGGAAGGAGAGCCTCACGTACTGGAGGCTCTGTCACCCCCTCAATCCAGCAGTGCCCCGAGTCCAAACCTATTGGGGAAGAGTGGGGAAGACGCAGAGAACCCACTGAGCGATAAATGTTGCAGGAAGACTTTGTTCTACCTTATCACCACCCTGAACGAATCGTTCCGGCCTGATTACGATTTCAGTGCGGCCCGTGCCCATGAGTTCAGCCGAGAGCCAAGTGCTAACTGGGTGGCCAACTCTGTAAACAGCAGCCTTTATTCTGCTGTGGGGGAGCAGTTTAACACTTTAGGCCCAGAACTGTGGACTGCCATTGACCAAGAGATAAACCTGCAGGGCTGTGACATCTACAGCTACAACCCAGACCTGGACTCTGATCCCTTTGGTGAGGAAGGAAGCCTGTGGTCCTTTAACTACTTCTTTTACAACAAGAAGCTTAAACGCATTCTATTCTTCACATGCCGCTCAGTCAGTGTCCTCAGCAGTTACGGTCGCAGTGGCCTCGACAATGAGTTGGACATGGAACTGGATGATGAAGAGGAATTGGATGGCTTCATGGAAGACAGGATTCCCAGAGCTCTGTGTGTCTAAAGTTTCCTCGCGGGTCATATCCTGAGCTTCAGCCAAAGGGCCTCACTGTCAACTTTGCAcccacttcttttttttttttcaagaaaaggACTTTCAAAACTTTACTTTTTAGGGTTTTTCTGAAATGTGTGTGCtttgtttttacttttctttgtggaatgaggaggaggaagaatATTAGATTCCAGAGAGCTGCTTGGACAAGTTTTGACATGGACTCATTTAGGCAGTGGTGAAGCTGAGACTGTAAAAACCCCTGGACGCCAGCTCTCCCAGAAAAGAAATGAAGCAACATTCAAACACCAGCATTATAAAGGAGGGTGGGGACTAAAAAGACTGTTTGAGTACCATTTCTGCCCCtctgttttattggattttatttttttatcattttaagtttttaaactgTGAAAGGTTTGGAGCTTCTGTATGTGAACTTTCTCATTTATCTTGATATGTAGTCTGAccctttaaacttttatttttccccctgtctgtttttgtcagatatttttatccaaagtaaCTAGCAGGTACTTTTTTCTTCtctgaatgttttgaatttaaCTCATGGCTTTGCAAATGAGCAATAGATATTTTAGATAGTATTTGCCTTGCATTGTTGTTCATGGTTAAACTGTCTATAAAGCTTTTTGTAAGCGTGATTTATTTGAATTCGTCTATTTTTAGTATATACTGCACTGATTCTTTATTATTGTctgcaagtttttatttttgttgacatTTATTTGGCTTTCTACAATGGCTTTTTTATAATGTGGGCCTTTAAAGGAACTCTCCACATTTTTGGGAGATATGCTGATTTTACAGATTCACTAGAGTTGAGTTTTAtcgtctattttttttttttttttttttttaaatctgtacaGCTAATTTCTGGGTCTGGCAGAGGCACTTctatcttagcttagcataaaccattgaatcggattagattGTTAGCAACCCacttaaatgtcaaaaaaaataagTTTCTATTTaaggtaaactttttttttatttttttgtagttgcaTTGTGTATTAAGAAAATTACTATTAAAGTTACAATTTTCAAGGCAGATATGTTCCAAACTATACTTTCATTCTGCTATAATCATGCaactttgctgccgtaccatggctgcagtaTTCGCAATGGTCTCCATCTAGGTAACTATATACTGGGTTCTACATATTTCCCCaagaaagtggagtgttcctttacaGCTGTCCTTACTATggcaagcaaaaacaaacaagcaagccaAATATTGTAGAAGCTTTTATGTCTGGTTTATCTGAATCTGCCCATGTTTCATAACAATGTAAAATTTCCAAACCGTGTTGACATGGAAAGAGAAATGTGAACAGAATCTGTCTCTTGTAGCCATTTAGGATGCaaagcaacacatttttaaaatattattttaagatgACTGAACAtctgtgaaaataaaaatatggttTTTTGTTTGATACCTG

Function

symbol description
maf1 Enables RNA polymerase III type 1 promoter sequence-specific DNA binding activity; RNA polymerase III type 2 promoter sequence-specific DNA binding activity; and RNA polymerase III type 3 promoter sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase I and negative regulation of transcription by RNA polymerase III. Located in nucleolus and nucleoplasm. Part of cytoplasm. Is active in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000036489

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066468 False 771 mRNA 0.52 6 40081630 40088843
TCONS_00066469 True 2748 mRNA 0.40 8 40083601 40092016

Neighbor

gene id symbol gene type direction distance location
XLOC_033954 sorcs2 coding upstream 23858 39757608 ~ 40057772 (+)
XLOC_033953 tada2b coding upstream 338178 39738505 ~ 39743452 (+)
XLOC_033952 si:dkey-58i8.5 coding upstream 358914 39720317 ~ 39722716 (+)
XLOC_033951 BX908792.2 coding upstream 367856 39713215 ~ 39713774 (+)
XLOC_033950 ccl36.1 coding upstream 374469 39706004 ~ 39707161 (+)
XLOC_033956 si:ch73-174h16.4 coding downstream 1646 40093662 ~ 40102043 (+)
XLOC_033957 esyt2b coding downstream 56197 40148213 ~ 40202225 (+)
XLOC_033958 ncapg2 coding downstream 113378 40205394 ~ 40227602 (+)
XLOC_033959 ptprn2 coding downstream 136406 40228422 ~ 40499386 (+)
XLOC_033960 dre-mir-153a coding downstream 393494 40485510 ~ 40485590 (+)
XLOC_033931 BX957297.4 non-coding upstream 1403098 38678418 ~ 38678532 (+)
XLOC_033929 BX957297.3 non-coding upstream 1432101 38649136 ~ 38649529 (+)
XLOC_033922 NA non-coding upstream 1735151 38315655 ~ 38346479 (+)
XLOC_033917 BX323797.2 non-coding upstream 1833883 38245927 ~ 38247747 (+)
XLOC_033963 CU041319.1 non-coding downstream 778615 40870631 ~ 40870748 (+)
XLOC_033965 NA non-coding downstream 870712 40962728 ~ 41104337 (+)
XLOC_033966 AL772146.1 non-coding downstream 1020885 41112901 ~ 41113295 (+)
XLOC_033975 BX005319.1 non-coding downstream 1367637 41459653 ~ 41460435 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_11698637_11702653 MAF1.L, MAF1 coding CI01000026 null 11698637 ~ 11703649 (+)
bowfin (Amia calva) AMCG00019003 maf1 coding CM030124.1 CM030124.1 478027 ~ 496837 (-)