G1648605


Basic Information

Item Value
gene id G1648605
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 65022071 ~ 65023620 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1886548
ctcactccctctaaccttctccttccctctctctctccctctaaccttctccttccctcttcacTAGGTCTCAGGTTTCTCTCGTTTCCTCTCCTAACCATGTCCATTTCCCAGTATTACTGAAATGTCAGTCTCTTCTGAATCggcattttttgtattttttatttacagaCCCCCCCCCTCCTTACCACATGTACAAGTCTTTCTCTCAGGCATCCAACACACACAACCTCTCTTTTTCTGTCATGATACCAGAGTGAGGTATCAGAGCCACTGCTTCATGATCCATCAAATATCCATCTTTTCAAATATTCACTGTTTCATTCCTCTGGGAAAATCTGCGCCTGGCGTTCAAAGCCTTTTGCCTGCTGGCTAATCGAACCCTCCTCTATAATACCTAATGTCGTATGTTTCCCACCCGATATCAACCCTACCCAGCGTGGTGCTCTGCCAAGCCTCTTCTCCACATCGCTCCAGTGAAGACCACAGTTCTCCAATGGACAACGGAGGGACTGGAGACGTGGTGGAAAAGGACCAGTGCTTCTTTCCTTCAGTTTCAGGCTTCCTGACCCAGAACCAGCCAGTCGGTCCGTGGGAACCGGAATAATCCCCCTATCAGGTTCTGAAACACTGATACACAGATTCGACAGAAAAGTGTCTGTAGAATCTGTCAGTCCTACCAATGGACCAATGAGACTGACATAGAACAGACAGAACCGGCTAAGAACACTACTCCTCCTCCTTACCCTCCGCTGTACAACCAGGACCATGTAGAAGCCTCcttagctcctcctcctcctcctcctcctccgctgaACAACCAGGACCAGGCTGAAGCCTCCctagctcctcctcctcctcctcctcctcctccgctgtACGACCAGGACCAGGCTGAAGCCTCcctagttcctcctcctcctccgctgaACGACCAGGACCAGGCAGAAGCCTCcctagttcctcctcctcctcctcctcctcctcctcttccgctGTACGACCAAGACCAGGCTGAAGCCTCcctagttcctcctcctcctcctcctcctcctccgctgaACAACCAGGACCAGGCTGAAGCCTCCctagctcctcctcctcctcctcctcctcctccgctgaACAACCAGGACCAGGCTGAAGCCTCCCTAGCCTGGTGAAGAGCTCCCTACAGGGTGGGTTCAACGTATGAAGACGTGAATATGACTATGGGTtggactgtttttttttgtggtttCATACTAAAGCTTCGGTCAAATGAGTGTAAtgcatttttaaacattttaaccCAATAAATAATTGTGTAGTTATTGGTTGCTCTGCTTGTATCCGTAGTTCTCCAGTGAATTCGAGGATATTTCTCAAAAACAGTCAAATCTGTTGAAGTGAGCTAAACCGCTGTTCAGTCAGAGTCCTTTTAGTTCAAGACATTCTTATCAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1886548 True 1445 lncRNA 0.50 2 65022071 65023620

Neighbor

gene id symbol gene type direction distance location
LOC110498417 capn3 coding upstream 1472 64971235 ~ 65020599 (+)
LOC118941527 ERH coding upstream 469157 64540285 ~ 64552914 (+)
LOC118941371 NA coding upstream 539808 64481427 ~ 64482263 (+)
LOC118941526 NA coding upstream 801502 64215286 ~ 64220569 (+)
LOC118941525 NA coding upstream 806454 64202220 ~ 64215617 (+)
wdr32 dcaf10 coding downstream 21791 65045411 ~ 65070228 (+)
LOC110498306 LOC106563190 coding downstream 53760 65077380 ~ 65103465 (+)
manba manba coding downstream 85065 65108685 ~ 65142820 (+)
nat8 LOC106607815 coding downstream 206064 65229684 ~ 65239437 (+)
LOC118941380 NA coding downstream 218062 65241682 ~ 65244293 (+)
G1648551 NA non-coding upstream 8667 64847238 ~ 65013404 (+)
G1648620 NA non-coding upstream 9321 65011234 ~ 65012750 (+)
G1648608 NA non-coding upstream 41128 64980364 ~ 64980943 (+)
G1648600 NA non-coding upstream 58131 64957920 ~ 64963940 (+)
G1648570 NA non-coding upstream 102962 64917374 ~ 64919109 (+)
G1648623 NA non-coding downstream 632 65024252 ~ 65027253 (+)
G1648626 NA non-coding downstream 16473 65040093 ~ 65040335 (+)
G1648627 NA non-coding downstream 18130 65041750 ~ 65042048 (+)
G1648636 NA non-coding downstream 36788 65060408 ~ 65060744 (+)
G1648645 NA non-coding downstream 65082 65088702 ~ 65089107 (+)
G1648296 NA other upstream 893003 64128208 ~ 64129068 (+)
LOC110498409 LOC106592792 other upstream 1630239 63380908 ~ 63414582 (+)
G1647477 NA other upstream 1818014 63202756 ~ 63204057 (+)
G1647411 NA other upstream 1944928 63075149 ~ 63077143 (+)
G1649268 NA other downstream 438153 65461773 ~ 65463454 (+)
G1649291 NA other downstream 520757 65544377 ~ 65545055 (+)
G1649309 NA other downstream 554819 65578439 ~ 65582582 (+)
G1649319 NA other downstream 577340 65600960 ~ 65602416 (+)
LOC110498653 atrn other downstream 710994 65549526 ~ 65812816 (+)

Expression


Co-expression Network