LOC110498306 (LOC106563190)


Basic Information

Item Value
gene id LOC110498306
gene name LOC106563190
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 65077380 ~ 65103465 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955409.1
TCGACGCCTAACGTTATCCCATCTAGCTATATTAGTGGTCGACGCCTAACGTCAGCCCATCTAGCTTTTTTAGTGGTCGACGCTTAACGTCCACCCATCTAGCTTTATTAGGGGGTCGACGCCTAACGTCAGATAACAGTGAATTTGTCCTTCCGTCAGGTTATTTACCCTGTTATACAGCGTCAGTTGCCCAGTTGGGGGCAAACTCGGGGAAGATTTGCTTTTTCCAACATTGCTTGTAATTCTCTCGGAGTGAGGATGGCGCTGAAAAGGATCCACAAGGAGCTGAATGATCTGGCTCGTGACCCTCCAGCACAGTGCTCAGCAGGACCAGTGGGAGATGACATGTTTCACTGGCAAGCCACGATCATGGGACCTaATGACAGTCCATATCAGGGGGGCGTTTTCTTCCTCACCATTCATTTCCCCACAGACTATCCTTTCAAACCCCCTAAGttaGCGTTTACCACAAGAATTTACCACCCCAATATTAACAGTAACGGCAGTATCTGTTTGGATATTCTCCGATCACAGTGGTCGCCGGCTTTAACCATTTCTAAAGTTCTGCTCTCCATTTGCTCCCTGTTATGTGATCCCAACCCAGACGACCCTCTAGTACCAGAGATCGCACGCATCTATAAAGCAGATAGTGACAAATACAGCAGAATAGCAAGAGAATGGACGCAGAAATACGCCATGTGATGACTGGTCTGAACGGATCATCGGAAGGAGAACGTCGTTGTAGCTGGAGTCAACTTTAATTGCttgttttcattattttgttCATTTTGTTATTGAATTAGACTCATTTTGCCCCCATTTTCACTCCTTCATTTATGTGCTATTAAAAAGATAGTGTTTGTTGCTCGGACAGTCAACGTGTGTACTAGTTTAATTTAAGTGCGGGAAAAAACACAACATTTTAATGTAAGTCTTTCATGGGTTCTGAACTCTTCATGTTGAGCATGCAACAACAGTATACGGCCGTGCCGACTGGCCTTTTGGTTATCAGACTAAACCACTAGACTGCGTTCCATCCATGTTGTTCTGAGGACGTTGAAGACACCTGACCAAACCGGACAGACGTGTCTCTTCAGGATACACcaactggtgtgtgatgttgttggctgtgtctgaaatggcagtctattccctatatacactacttttaaccagagatTTTCTAGGGGAATATCCCTGTGGATCCTGTTCTACTAGGGGAATATCCCTGTGGATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCTGGTCTACTATGGGAATATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCTGGTCTACTTGAGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTTGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCTGGTCTTCTAGGGAAATATCCTGGTCTACTAGGAGAATATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCTGGTCCACTAGGGGAATATCCCTGTGGATCCCGGTCTTCTAGGGGTGGATCTCGGTCTACTAGGGGAATATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGTGGATCCCGGTCTACTTGGGGAATATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTTCTAGGGGAATATCCTGGTCTACTAGGGGAATATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCTGGTCTACTAAGGGAATATTCCTGTGGATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTTTACTAGGGGAATATCCCTGTGGATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCTGATCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGCGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTTTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCTGATCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATATCGGTCTACTAGGGGAATATCCCTGTGGATATCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATATCGGTCTACTAGGGGAATATCCCTGTGGATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCGGGCTACTAGGGGAATATCCCTGTGGATCCCGGTCTTCTAGGGGAATATCCCTGTGGatcccggtctaaagtagtgcattttaTCAAGAATTTGATGCCATTTCGATGGCAAGCAGTGTTATGCTTTTTAATATTGTTTGCGACACATGGGCCTGAGAGGAATATTTACCGCCTCGTATCCAAATGTGTGAACAGACAAACAAACGCTGCTCGGTATGTCAACAAacagcaacaaacaaacaaaagaaaTGTAATGTATTTTATGCATGTTATAGGAATAGGTTGGATGTTACCCATAGGAAGTGGCTACAAAGAGCAAATGGGGAAATTATTCAATGAAAGCTTTCTATCTTTGATgatgattgttttttttttttttttaagttgagAGCTTATAGTTAGGTCACCTACCTAAACACTGTCTTGTAGCCCTGAGACGCGACGCAGAGCTATTGGTTCAACTATCTACTGGTGCCTCTGGTCGTCTtggtttttttgttgttgagtttCCCCTTCAATAAAGGTAAATCATAAACACTT

Function

NR:

description
ubiquitin-conjugating enzyme E2 D2-like

GO:

id name namespace
GO:0061418 regulation of transcription from RNA polymerase II promoter in response to hypoxia biological_process
GO:0035666 TRIF-dependent toll-like receptor signaling pathway biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0034138 toll-like receptor 3 signaling pathway biological_process
GO:0034142 toll-like receptor 4 signaling pathway biological_process
GO:0005829 cytosol cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K06689 UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955409.1 True 3892 mRNA 0.49 7 65077380 65103465

Neighbor

gene id symbol gene type direction distance location
wdr32 dcaf10 coding upstream 7152 65045411 ~ 65070228 (+)
LOC110498417 capn3 coding upstream 56781 64971235 ~ 65020599 (+)
LOC118941527 ERH coding upstream 524466 64540285 ~ 64552914 (+)
LOC118941371 NA coding upstream 595117 64481427 ~ 64482263 (+)
LOC118941526 NA coding upstream 856811 64215286 ~ 64220569 (+)
manba manba coding downstream 5220 65108685 ~ 65142820 (+)
nat8 LOC106607815 coding downstream 126219 65229684 ~ 65239437 (+)
LOC118941380 NA coding downstream 138217 65241682 ~ 65244293 (+)
LOC110498315 LOC106606645 coding downstream 146614 65250079 ~ 65291091 (+)
LOC110498317 LOC106600683 coding downstream 412343 65515808 ~ 65526958 (+)
G1648636 NA non-coding upstream 16636 65060408 ~ 65060744 (+)
G1648627 NA non-coding upstream 35332 65041750 ~ 65042048 (+)
G1648626 NA non-coding upstream 37045 65040093 ~ 65040335 (+)
G1648623 NA non-coding upstream 50127 65024252 ~ 65027253 (+)
G1648605 NA non-coding upstream 53760 65022071 ~ 65023620 (+)
G1648648 NA non-coding downstream 4472 65107937 ~ 65108190 (+)
G1648649 NA non-coding downstream 17077 65120542 ~ 65120969 (+)
G1648654 NA non-coding downstream 31899 65135364 ~ 65135760 (+)
G1648617 NA non-coding downstream 40169 65143634 ~ 65144145 (+)
G1648659 NA non-coding downstream 41257 65144722 ~ 65144947 (+)
G1648608 NA other upstream 96437 64980364 ~ 64980943 (+)
G1648296 NA other upstream 948312 64128208 ~ 64129068 (+)
LOC110498409 LOC106592792 other upstream 1685548 63380908 ~ 63414582 (+)
G1647477 NA other upstream 1873323 63202756 ~ 63204057 (+)
G1647411 NA other upstream 2000237 63075149 ~ 63077143 (+)
G1649268 NA other downstream 358308 65461773 ~ 65463454 (+)
G1649291 NA other downstream 440912 65544377 ~ 65545055 (+)
G1649309 NA other downstream 474974 65578439 ~ 65582582 (+)
G1649319 NA other downstream 497495 65600960 ~ 65602416 (+)
LOC110498653 atrn other downstream 631149 65549526 ~ 65812816 (+)

Expression


Co-expression Network