RNA id: XM_036955409.1


Basic Information

Item Value
RNA id XM_036955409.1
length 3892
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC110498306
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 65077380 ~ 65103465 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGACGCCTAACGTTATCCCATCTAGCTATATTAGTGGTCGACGCCTAACGTCAGCCCATCTAGCTTTTTTAGTGGTCGACGCTTAACGTCCACCCATCTAGCTTTATTAGGGGGTCGACGCCTAACGTCAGATAACAGTGAATTTGTCCTTCCGTCAGGTTATTTACCCTGTTATACAGCGTCAGTTGCCCAGTTGGGGGCAAACTCGGGGAAGATTTGCTTTTTCCAACATTGCTTGTAATTCTCTCGGAGTGAGGATGGCGCTGAAAAGGATCCACAAGGAGCTGAATGATCTGGCTCGTGACCCTCCAGCACAGTGCTCAGCAGGACCAGTGGGAGATGACATGTTTCACTGGCAAGCCACGATCATGGGACCTaATGACAGTCCATATCAGGGGGGCGTTTTCTTCCTCACCATTCATTTCCCCACAGACTATCCTTTCAAACCCCCTAAGttaGCGTTTACCACAAGAATTTACCACCCCAATATTAACAGTAACGGCAGTATCTGTTTGGATATTCTCCGATCACAGTGGTCGCCGGCTTTAACCATTTCTAAAGTTCTGCTCTCCATTTGCTCCCTGTTATGTGATCCCAACCCAGACGACCCTCTAGTACCAGAGATCGCACGCATCTATAAAGCAGATAGTGACAAATACAGCAGAATAGCAAGAGAATGGACGCAGAAATACGCCATGTGATGACTGGTCTGAACGGATCATCGGAAGGAGAACGTCGTTGTAGCTGGAGTCAACTTTAATTGCttgttttcattattttgttCATTTTGTTATTGAATTAGACTCATTTTGCCCCCATTTTCACTCCTTCATTTATGTGCTATTAAAAAGATAGTGTTTGTTGCTCGGACAGTCAACGTGTGTACTAGTTTAATTTAAGTGCGGGAAAAAACACAACATTTTAATGTAAGTCTTTCATGGGTTCTGAACTCTTCATGTTGAGCATGCAACAACAGTATACGGCCGTGCCGACTGGCCTTTTGGTTATCAGACTAAACCACTAGACTGCGTTCCATCCATGTTGTTCTGAGGACGTTGAAGACACCTGACCAAACCGGACAGACGTGTCTCTTCAGGATACACcaactggtgtgtgatgttgttggctgtgtctgaaatggcagtctattccctatatacactacttttaaccagagatTTTCTAGGGGAATATCCCTGTGGATCCTGTTCTACTAGGGGAATATCCCTGTGGATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCTGGTCTACTATGGGAATATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCTGGTCTACTTGAGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTTGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCTGGTCTTCTAGGGAAATATCCTGGTCTACTAGGAGAATATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCTGGTCCACTAGGGGAATATCCCTGTGGATCCCGGTCTTCTAGGGGTGGATCTCGGTCTACTAGGGGAATATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGTGGATCCCGGTCTACTTGGGGAATATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTTCTAGGGGAATATCCTGGTCTACTAGGGGAATATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCTGGTCTACTAAGGGAATATTCCTGTGGATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTTTACTAGGGGAATATCCCTGTGGATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCTGATCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGCGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTTTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCTGATCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATATCGGTCTACTAGGGGAATATCCCTGTGGATATCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATATCGGTCTACTAGGGGAATATCCCTGTGGATCCTGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCTGTGGATCCCGGTCTACTAGGGGAATATCCCGGGCTACTAGGGGAATATCCCTGTGGATCCCGGTCTTCTAGGGGAATATCCCTGTGGatcccggtctaaagtagtgcattttaTCAAGAATTTGATGCCATTTCGATGGCAAGCAGTGTTATGCTTTTTAATATTGTTTGCGACACATGGGCCTGAGAGGAATATTTACCGCCTCGTATCCAAATGTGTGAACAGACAAACAAACGCTGCTCGGTATGTCAACAAacagcaacaaacaaacaaaagaaaTGTAATGTATTTTATGCATGTTATAGGAATAGGTTGGATGTTACCCATAGGAAGTGGCTACAAAGAGCAAATGGGGAAATTATTCAATGAAAGCTTTCTATCTTTGATgatgattgttttttttttttttttaagttgagAGCTTATAGTTAGGTCACCTACCTAAACACTGTCTTGTAGCCCTGAGACGCGACGCAGAGCTATTGGTTCAACTATCTACTGGTGCCTCTGGTCGTCTtggtttttttgttgttgagtttCCCCTTCAATAAAGGTAAATCATAAACACTT

Function

GO:

id name namespace
GO:0061418 regulation of transcription from RNA polymerase II promoter in response to hypoxia biological_process
GO:0035666 TRIF-dependent toll-like receptor signaling pathway biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0034138 toll-like receptor 3 signaling pathway biological_process
GO:0034142 toll-like receptor 4 signaling pathway biological_process
GO:0005829 cytosol cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K06689 UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1886605 lncRNA upstream 16636 65060408 ~ 65060744 (+) True G1648636
TU1886595 lncRNA upstream 35332 65041750 ~ 65042048 (+) True G1648627
TU1886594 lncRNA upstream 37045 65040093 ~ 65040335 (+) True G1648626
TU1886584 lncRNA upstream 50127 65025344 ~ 65027253 (+) True G1648623
TU1886588 lncRNA upstream 50541 65024252 ~ 65026839 (+) False G1648623
TU1886618 lncRNA downstream 4472 65107937 ~ 65108190 (+) True G1648648
TU1886619 lncRNA downstream 17077 65120542 ~ 65120969 (+) True G1648649
TU1886624 lncRNA downstream 31899 65135364 ~ 65135760 (+) True G1648654
TU1886576 lncRNA downstream 40169 65143634 ~ 65144145 (+) True G1648617
TU1886629 lncRNA downstream 41257 65144722 ~ 65144947 (+) True G1648659
XM_036955407.1 mRNA upstream 7152 65045411 ~ 65070228 (+) False wdr32
XM_036955408.1 mRNA upstream 7152 65045412 ~ 65070228 (+) True wdr32
XM_036955403.1 mRNA upstream 56781 64971235 ~ 65020599 (+) False LOC110498417
XM_036955404.1 mRNA upstream 56781 64971239 ~ 65020599 (+) False LOC110498417
XM_036955405.1 mRNA upstream 56781 64971240 ~ 65020599 (+) False LOC110498417
XM_036955413.1 mRNA downstream 5220 65108685 ~ 65142820 (+) False manba
XM_036955410.1 mRNA downstream 5221 65108686 ~ 65142820 (+) False manba
XM_036955411.1 mRNA downstream 5221 65108686 ~ 65142820 (+) False manba
XM_036955412.1 mRNA downstream 5221 65108686 ~ 65142820 (+) True manba
XM_021574950.2 mRNA downstream 126219 65229684 ~ 65239437 (+) False nat8
TU1886551 other upstream 96437 64980364 ~ 64980943 (+) False G1648608
TU1886125 other upstream 948312 64128208 ~ 64129068 (+) True G1648296
TU1885128 other upstream 1685548 63391625 ~ 63391832 (+) False LOC110498409
TU1885075 other upstream 1873323 63202756 ~ 63204057 (+) False G1647477
TU1884975 other upstream 2000237 63075149 ~ 63077143 (+) True G1647411
TU1887705 other downstream 358308 65461773 ~ 65463454 (+) True G1649268
TU1887728 other downstream 440912 65544377 ~ 65545055 (+) True G1649291
TU1887755 other downstream 474974 65578439 ~ 65582582 (+) True G1649309
TU1887771 other downstream 497495 65600960 ~ 65602416 (+) True G1649319
TU1887742 other downstream 631149 65734614 ~ 65812816 (+) False LOC110498653

Expression Profile